G1130780 (LOC106606334)


Basic Information

Item Value
gene id G1130780
gene name LOC106606334
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97162262 ~ 97163079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1286655
AAGAGGTAGCAGAGGACACAGGCCAGTAGTAGTTTGATGAGTGAGAAAAAGACAGGAGGGCCCTGGTCAGAGCAGGGCTCTGTCCCAGCCTCGTACCCAGGATCGGGGCCTGATTCTGGGTCTGATTCTGGGCTTAGCCAGTGGGTTATGTGGTGGTGGAAAACCAGACCTGTCAACACACAGGTCAACAGAGGCCAGAACACCCGCAGGTTCAGAGTGTACacactcatcctcctctctctctcactctctctctcttctcgttccctctctctcttctcgttccctctctctcttctcgttccccctctctccttctttctgttGCTCCTAGGTTCCTTCGTTCTTTCTCTTCTTATTGTCTGTCTAGGACTTGTTCTTTAGCGATGCCAGAGAACTGAGACAGGGTCAGGGAAGGCTAACCCATCATgacacacacgctgacacacacacgctgactctctctctcgtcttttcCCTCCTCTGCGCCTCAATGTTCTTCTCTccgttgtctcctctccttccttcttgtAACAGAACtcccacttcttcttcttcttctcctctccagcTTGTTTGTTCAGTTTAAAGTCAGTTGAAGTTCCTCTTCAGAAGttgcccctccttctcctcctctcttcttcaatCTGTCCCTCCTGTTTTTCCTCTCCAGAGCTGTATGATGTCAGGTTTATCTGTCTTTGTGAAgacaggttctctctctctctctcgtcctcttgttctctctctcttgtcttctctttttcccg

Function

NR:

description
inositol 1,4,5-trisphosphate receptor-interacting protein-like 2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1286655 True 770 TUCP 0.50 2 97162262 97163079

Neighbor

gene id symbol gene type direction distance location
LOC118937806 clec19a coding upstream 93133 97054841 ~ 97069129 (+)
LOC118937805 LOC106601973 coding upstream 289525 96869922 ~ 96872737 (+)
LOC110485332 LOC105030590 coding upstream 323582 96768391 ~ 96838680 (+)
LOC118937804 LOC106591169 coding upstream 459537 96676774 ~ 96702725 (+)
LOC110494408 NA coding upstream 489637 96671465 ~ 96672625 (+)
LOC110539044 mrp1 coding downstream 76979 97240058 ~ 97298946 (+)
LOC110539053 LOC106601961 coding downstream 355261 97518340 ~ 97526372 (+)
trnat-cgu-4 NA coding downstream 418204 97581283 ~ 97581354 (+)
LOC118936512 LOC106602055 coding downstream 583657 97709710 ~ 97764938 (+)
LOC118937809 LOC105031325 coding downstream 629749 97792828 ~ 97860629 (+)
G1130775 NA non-coding upstream 8919 97150798 ~ 97153343 (+)
G1130774 NA non-coding upstream 11653 97146281 ~ 97150609 (+)
G1130771 NA non-coding upstream 22561 97139248 ~ 97139701 (+)
G1130769 NA non-coding upstream 32053 97130006 ~ 97130209 (+)
G1130765 NA non-coding upstream 46193 97115780 ~ 97116069 (+)
G1130793 NA non-coding downstream 26446 97189525 ~ 97189982 (+)
G1130832 NA non-coding downstream 123769 97286848 ~ 97291570 (+)
G1130835 NA non-coding downstream 132350 97295429 ~ 97296381 (+)
G1131093 NA non-coding downstream 143255 97306334 ~ 97394638 (+)
G1131095 NA non-coding downstream 158132 97321211 ~ 97333070 (+)
G1130570 alg1 other upstream 528810 96618256 ~ 96633452 (+)
LOC110538761 LOC106606716 other upstream 1531687 95629494 ~ 95815227 (+)
G1129772 NA other upstream 1642620 95519178 ~ 95519642 (+)
G1129613 LOC106601744 other upstream 1852565 95300784 ~ 95309697 (+)
G1131438 NA other downstream 657645 97820724 ~ 97822057 (+)
LOC118936514 smim22 other downstream 1096930 98259570 ~ 98268855 (+)
G1132060 NA other downstream 1561778 98724857 ~ 98725197 (+)
G1132058 NA other downstream 1600880 98762440 ~ 98767257 (+)
G1132082 NA other downstream 1619060 98782139 ~ 98783327 (+)

Expression


Co-expression Network