G1131510


Basic Information

Item Value
gene id G1131510
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98090990 ~ 98124048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1287730
gttataaccatgatatgacctctctgttcatagttataaccatgatatGACCTCTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgacaTGACCTCTCTCTTCAGTTATATCCATGACATGACCTCTCTGTTCATAGTTCTAACCATGATATGACCTCTCAAgttcatagttataaccatgacaTGACCTTTCTGctcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgacaTGACCTCTCTgttcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgatatgacctctctgttcatagttataaccatgatTGGACCTTTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgatatGACCTTTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgatatGACCTTTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgatatGACCTTTCTgttcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGGTTCACAGTTATAACCATGACATGACCTCTCGGGTTCTAGTTATAACCACGAtgactgtttctctgtctcaACCCCTCAGTTGATGCCAAAGGCCTGGTAGTAACAGGCCAAGTCCTGTCTTTATATCGATTACTATTATTATGTTTGAATCTGAATGACTACCGTTATCCAGACACAATACCACCACAGTGTTCTGCACAGCCTGTACCACGGTATGTATTGGTCAACAGTCTACTTCATGTACCTATGTGATGTATAAATGTGATATAAAAGTACCAAATGAGGCCGTAGGTGAAACTAAGATGTATGGATTACAGTGTGAATGACGAGCTGTTTCAATTCTGTGGATCAACTGCTTTACCTGCCAGTCAATCAAACAAACAATCAAAGCTTttatttatattgtgtttatttaaataaaaatatagaaaCGCATTTGAAGCCAAGGCCACAGTGACAAGACTAAACTTCCTAGGTAGGTAGAGGTGGAGATCTGACTACGAAAGTGTTGATTCCTCGACTCCTTTGATGGTCGACCTTCGAAACACCCTGGAGTCTTTCACCACCATATTAGGCAGGTTAAAGACCCTGAGACAAGGAGACGGGCCGATCTCCCTCAGACTGGCCTAAATGCCCTACCCAAAGACTCTCAGTCACTCagacctcttgcactgagatacaggATCTATCATCTCTGCTGCAACACTCACTGCTGATCAGCTTTTTTAAA
>TU1287731
gttataaccatgatatgacctctctgttcatagttataaccatgatatGACCTCTCGGGTTAatagttataaccatgatatGACCCCTCTgttcatagttataaccatgatatGACATCTCTTCAGTTATATCCATGACATGACCTCTgttcatagttataaccatgacaTGACCTCTCGGGTTCATAGTTATAACTGACATGACCTCTCGGgttcatagttataaccatgatatGACCCCTCTgttcatagttataaccatgatatgacctctgttcatagttataaccatgacaTGACCTCTCTgttcatagttataaccatgacaTGACCTCTCTCTTCAGTATATCCATGACATGACCTCTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgacaTGACCTCTCTCTTCAGTTATATCCATGACATGACCTCTCTGTTCATAGTTCTAACCATGATATGACCTCTCAAgttcatagttataaccatgacaTGACCTTTCTGctcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgacaTGACCTCTCTgttcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgatatgacctctctgttcatagttataaccatgatTGGACCTTTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgatatGACCTTTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgatatGACCTTTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgatatGACCTTTCTgttcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGGTTCACAGTTATAACCATGACATGACCTCTCGGGTTCTAGTTATAACCACGAtgactgtttctctgtctcaACCCCTCAGTTGATGCCAAAGGCCTGGTAGTAACAGGCCAAGTCCTGTCTTTATATCGATTACTATTATTATGTTTGAATCTGAATGACTACCGTTATCCAGACACAATACCACCACAGTGTTCTGCACAGCCTGTACCACGGTATGTATTGGTCAACAGTCTACTTCATGTACCTATGTGATGTATAAATGTGATATAAAAGTACCAAATGAGGCCGTAGGTGAAACTAAGATGTATGGATTACAGTGTGAATGACGAGCTGTTTCAATTCTGTGGATCAACTGCTTTACCTGCCAGTCAATCAAACAAACAATCAAAGCTTttatttatattgtgtttatttaaataaaaatatagaaaCGCATTTGAAGCCAAGGCCACAGTGACAAGACTAAACTTCCTAGGTAGGTAGGTAGAGGTGGAGATCTGACTACGAAAGTGTTGATTCCTCGACTCCTTTGATGGTCGACCTTCGAAACACCCTGGAGTCTTTCACCACCATATTAGGCAGGTTAAAGACCCTGAGACAAGGAGACGGGCCGATCTCCCTCAGACTGGCCTAAATGCCCTACCCAAAGACTCTCAGTCACTCagacctcttgcactgagatacaggATCTATCATCTCTGCTGCAACACTCACTGCTGATCAGcttttttaaaatg
>TU1287732
gttataaccatgatatgacctctctgttcatagttataaccatgatatGACCTCTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgacaTGACCTCTCTCTTCAGTTATATCCATGACATGACCTCTCTGTTCATAGTTCTAACCATGATATGACCTCTgttcatagttataaccatgatatgacctctgttcatagttataaccatgacaTGACCTCTCTgttcatagttataaccatgacaTGACCTCTCTCTTCAGTTATATCCATGACATGACCTCTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgacaTGACCTCTCTCTTCAGTTATATCCATGACATGACCTCTCTGTTCATAGTTCTAACCATGATATGACCTCTCAAgttcatagttataaccatgacaTGACCTTTCTGctcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgacaTGACCTCTCTgttcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgatatgacctctctgttcatagttataaccatgatTGGACCTTTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgatatGACCTTTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgatatGACCTTTCTgttcatagttataaccatgatatgacctctctgttcatagttataaccatgatatGACCTTTCTgttcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgacaTGACCTCTCGGgttcatagttataaccatgatatgacctctcgggttcatagttataaccatgacaTGACCTCTCGGGTTCACAGTTATAACCATGACATGACCTCTCGGGTTCATAGTTATAACCACGAtgactgtttctctgtctcaACCCCTCAGTTGATGCCAAAGGCCTGGTAGTAACAGGCCAAGTCCTGTCTTTATATCGATTACTATTATTATGTTTGAATCTGAATGACTACCGTTATCCAGACACAATACCACCACAGTGTTCTGCACAGCCTGTACCACGGTATGTATTGGTCAACAGTCTACTTCATGTACCTATGTGATGTATAAATGTGATATAAAAGTACCAAATGAGGCCGTAGGTGAAACTAAGATGTATGGATTACAGTGTGAATGACGAGCTGTTTCAATTCTGTGGATCAACTGCTTTACCTGCCAGTCAATCAAACAAACAATCAAAGCTTttatttatattgtgttt

Function

NR:

description
PREDICTED: enamelin-like isoform X3

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1287730 False 1598 lncRNA 0.40 2 98090990 98092897
TU1287731 False 1915 lncRNA 0.39 2 98090990 98124048
TU1287732 True 1527 lncRNA 0.38 3 98090990 98123725

Neighbor

gene id symbol gene type direction distance location
LOC110485325 LOC105012794 coding upstream 617 98065664 ~ 98090718 (+)
LOC110487112 LOC106594630 coding upstream 31539 98022211 ~ 98059451 (+)
LOC118937811 LOC106606197 coding upstream 73820 98003597 ~ 98017170 (+)
LOC118937810 dus1l coding upstream 175508 97894374 ~ 97915482 (+)
LOC118937809 LOC105031325 coding upstream 230470 97792828 ~ 97860629 (+)
LOC110516721 LOC105012791 coding downstream 63684 98187732 ~ 98218285 (+)
LOC118936514 smim22 coding downstream 135522 98259570 ~ 98268855 (+)
LOC110487124 LOC105006040 coding downstream 301712 98425760 ~ 98564239 (+)
LOC110516605 LOC106592968 coding downstream 852285 98976333 ~ 98977246 (+)
LOC110539183 LOC106606365 coding downstream 946948 99070996 ~ 99088300 (+)
G1131497 NA non-coding upstream 69581 98020808 ~ 98021409 (+)
G1131492 NA non-coding upstream 87603 98002002 ~ 98003387 (+)
G1131489 NA non-coding upstream 91591 97998201 ~ 97999399 (+)
G1131518 NA non-coding downstream 10103 98134151 ~ 98134350 (+)
G1131508 NA non-coding downstream 13875 98137923 ~ 98140321 (+)
G1131554 NA non-coding downstream 77769 98201817 ~ 98202540 (+)
G1131557 NA non-coding downstream 95705 98219753 ~ 98225599 (+)
G1131560 NA non-coding downstream 106093 98230141 ~ 98231090 (+)
G1131438 NA other upstream 268933 97820724 ~ 97822057 (+)
G1130780 LOC106606334 other upstream 927911 97162262 ~ 97163079 (+)
LOC118937804 LOC106591169 other upstream 1389053 96676774 ~ 96702725 (+)
G1130570 alg1 other upstream 1457538 96618256 ~ 96633452 (+)
LOC110538761 LOC106606716 other upstream 2460415 95629494 ~ 95815227 (+)
G1132060 NA other downstream 600809 98724857 ~ 98725197 (+)
G1132058 NA other downstream 639911 98762440 ~ 98767257 (+)
G1132082 NA other downstream 658091 98782139 ~ 98783327 (+)
G1132093 NA other downstream 671710 98795758 ~ 98797512 (+)

Expression


Co-expression Network