G1131784


Basic Information

Item Value
gene id G1131784
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98091189 ~ 98123707 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1288125
AGCTTTGATTGTTTGTTTGATTGACTGGCAGGTAAAGCAGTTGATCCACAGAATTGAAACAGCTCGTCATTCACACTGTAATCCATACATCTTAGTTTCACCTACGGCCTCATTTGGTACTTTTATATCACATTTATACATCACATAGGTACATGAAGTAGACTGTTGACCAATACATACCGTGGTACAGGCTGTGCAGAACACTGTGGTGGTATTGTGTCTGGATAACGGTAGTCATTCAGATTCAAACATAATAATAGTAATCGATATAAAGACAGGACTTGGCCTGTTACTACCAGGCCTTTGGCATCAACTGAGGGGTtgagacagagaaacagtcaTCGTGGTTATAACTAGAACCCGAGAGGTCATGTCATGGTTATAACTGTGAACCCGAGAGGTCAtgtcatggttataactatgaacccgagaggtcatatcatggttataactatgaacCCGAGAGGTCAtgtcatggttataactatgaacCCGAGAGGTCAtgtcatggttataactatgaacccgagaggtcatatcatggttataactatgaacCCGAGAGGTCAtgtcatggttataactatgaacccgagaggtcatatcatggttataactatgaacAGAAAGGTCAtgtcatggttataactatgaacccgagaggtcatatcatggttataactatgagCAGAAAGGTCAtgtcatggttataactatgaacTTGAGAGGTCATATCATGGTTAGAACTATGAACAGAGAGGTCATGTCATGGATATAACTGAAGAGAGAGGTCAtgtcatggttataactatgaacagagagGTCAtgtcatggttataactatgaacagaggtcatatcatggttataactatgaacAGAGGGGTCatatcatggttataactatgaacCCGAGAGGTCATG
>TU1288126
AGCTTTGATTGTTTGTTTGATTGACTGGCAGGTAAAGCAGTTGATCCACAGAATTGAAACAGCTCGTCATTCACACTGTAATCCATACATCTTAGTTTCACCTACGGCCTCATTTGGTACTTTTATATCACATTTATACATCACATAGGTACATGAAGTAGACTGTTGACCAATACATACCGTGGTACAGGCTGTGCAGAACACTGTGGTGGTATTGTGTCTGGATAACGGTAGTCATTCAGATTCAAACATAATAATAGTAATCGATATAAAGACAGGACTTGGCCTGTTACTACCAGGCCTTTGGCATCAACTGAGGGGTtgagacagagaaacagtcaTCGTGGTTATAACTATGAACCCGAGAGGTCAtgtcatggttataactatgaacCCGAGAGGTCAtgtcatggttataactatgaacccgagaggtcatatcatggttataactatgaacCCGAGAGgtcatatcatggttataactatgaacCCGAGAGGTCAtgtcatggttataactatgaacccgagaggtcatatcatggttataactatgaacAGAGAGGTCAtgtcatggttataactatgaacagaggtcatatcatggttataactatgaacAGAGGTCATATCATGGTTAGAACTATGAACAGAGAGGTCATGTCATGGATATAACTGAAGAGAGAGGTCAtgtcatggttataactatgaacagagagGTCAtgtcatggttataactatgaacagaggtcatatcatggttataactatgaacAGAGGGGTCatatcatggttataactatgaacCCGAGAGGTCATG
>TU1288127
AGCTTTGATTGTTTGTTTGATTGACTGGCAGGTAAAGCAGTTGATCCACAGAATTGAAACAGCTCGTCATTCACACTGTAATCCATACATCTTAGTTTCACCTACGGCCTCATTTGGTACTTTTATATCACATTTATACATCACATAGGTACATGAAGTAGACTGTTGACCAATACATACCGTGGTACAGGCTGTGCAGAACACTGTGGTGGTATTGTGTCTGGATAACGGTAGTCATTCAGATTCAAACATAATAATAGTAATCGATATAAAGACAGGACTTGGCCTGTTACTACCAGGCCTTTGGCATCAACTGAGGGGTtgagacagagaaacagtcaTCGTGGTTATAACTATGAACCCGAGAGGTCATGTCATGGTTATAACTGTGAACCCGAGAGGTCAtgtcatggttataactatgaacccgagaggtcatatcatggttataactatgaacCCGAGAGgtcatatcatggttataactatgaacAGAGAGGTCAtgtcatggttataactatgaacagaggtcatatcatggttataactatgaacAGAGGTCATATCATGGTTAGAACTATGAACAGAGAGGTCATGTCATGGATATAACTGAAGAGAGAGGTCAtgtcatggttataactatgaacagagagGTCAtgtcatggttataactatgaacagaggtcatatcatggttataactatgaacAGAGGGGTCatatcatggttataactatgaacCCGAGAGGTCATG
>TU1288129
TCatatcatggttataactatgaacagagaggtcatatcatggttataactatgaacAGAAAGGTCCAatcatggttataactatgaacagagaggtcatatcatggttataactatgaacCCGAGAGGTCAtgtcatggttataactatgaacccgagaggtcatatcatggttataactatgaacAGAGGGGTCatatcatggttataactatgaacCCGAGAGGTCATG
>TU1288128
AGCTTTGATTGTTTGTTTGATTGACTGGCAGGTAAAGCAGTTGATCCACAGAATTGAAACAGCTCGTCATTCACACTGTAATCCATACATCTTAGTTTCACCTACGGCCTCATTTGGTACTTTTATATCACATTTATACATCACATAGGTACATGAAGTAGACTGTTGACCAATACATACCGTGGTACAGGCTGTGCAGAACACTGTGGTGGTATTGTGTCTGGATAACGGTAGTCATTCAGATTCAAACATAATAATAGTAATCGATATAAAGACAGGACTTGGCCTGTTACTACCAGGCCTTTGGCATCAACTGAGGGGTtgagacagagaaacagtcaTCGTGGTTATAACTATGAACCCGAGAGGTCatatcatggttataactatgaacagagaggtcatatcatggttataactatgaacAGAAAGGTCata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1288125 False 923 lncRNA 0.40 3 98091189 98092559
TU1288126 False 820 lncRNA 0.40 6 98091189 98123707
TU1288127 False 754 lncRNA 0.40 5 98091189 98123707
TU1288129 False 232 lncRNA 0.38 2 98091189 98091800
TU1288128 True 438 lncRNA 0.39 2 98123007 98123707

Neighbor

gene id symbol gene type direction distance location
LOC110518411 LOC106606198 coding downstream 89596 97979771 ~ 98001593 (-)
LOC110485313 LOC106535622 coding downstream 116441 97959753 ~ 97974748 (-)
LOC110487083 tigd1 coding downstream 141958 97947278 ~ 97949231 (-)
LOC110487090 LOC106606200 coding downstream 147318 97917737 ~ 97943871 (-)
LOC110487093 LOC105031326 coding downstream 212613 97864865 ~ 97878576 (-)
LOC110485327 LOC105012792 coding upstream 13367 98137074 ~ 98186289 (-)
LOC118936513 cog1 coding upstream 106656 98230363 ~ 98259687 (-)
LOC110487128 rogdi coding upstream 142348 98265920 ~ 98283153 (-)
LOC110517726 glyr1 coding upstream 159755 98283462 ~ 98316905 (-)
LOC110485331 ppl coding upstream 209424 98333131 ~ 98380912 (-)
G1131776 NA non-coding downstream 30109 98060794 ~ 98061080 (-)
G1131775 NA non-coding downstream 30555 98060378 ~ 98060634 (-)
G1131774 NA non-coding downstream 44992 98044975 ~ 98046197 (-)
G1131769 NA non-coding downstream 66948 98023868 ~ 98024241 (-)
G1131764 NA non-coding downstream 73961 98016279 ~ 98017228 (-)
G1131799 NA non-coding upstream 50438 98174145 ~ 98174408 (-)
G1131814 LOC106592915 non-coding upstream 65182 98188889 ~ 98211641 (-)
G1131815 NA non-coding upstream 83056 98206763 ~ 98207237 (-)
G1131828 NA non-coding upstream 89773 98213480 ~ 98215847 (-)
G1131666 NA other downstream 230671 97857599 ~ 97860518 (-)
G1131720 NA other downstream 237596 97852786 ~ 97853593 (-)
LOC110538882 LOC106601977 other downstream 308366 97764189 ~ 97787224 (-)
G1131656 NA other downstream 378073 97712634 ~ 97713116 (-)
G1131863 NA other upstream 259263 98382970 ~ 98383815 (-)
G1132328 NA other upstream 882920 99006627 ~ 99010112 (-)
LOC118937838 LOC106606233 other upstream 929797 99052890 ~ 99059256 (-)
LOC110538840 LOC106601903 other upstream 968009 99090621 ~ 99092245 (-)

Expression


Co-expression Network