G1131828


Basic Information

Item Value
gene id G1131828
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98213480 ~ 98215847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1288187
ttataaaacatgtctttatggactggtagaaggtatcctgggacagagacagaggaggggacattataaaacatgtctttatggactggtagaaggtatcctgggacagagacagaggaggggacattATAAAACATGTCTTTATGGACCGGTAGAAGgtatcctgggacagagacagaggaggggacattataaaacatgtctttatggactggtagaaggtatcctgggacagagacagagacattataaaacatgtctttatggactggtagaaggtatcctgggacagagacagaggaggggacattataaaacatgtctttatggactggtagaaggtatcctgggacagagacagagg
>TU1288186
ttataaaacatgtctttatggactggtagaaggtatcctgggacagagacagaggatgggacattataaaacatgtctttatggactggtagaaggtatcctgggacagagacagagacattataaaaCATGTCTTTATGGACCGGAGACTTGAGGTACCGGTAGAAGGtatcctgggacagagacagacattataaaacatgtctttatggtctggtagaaggtatcctgggacagagacagaggaggggacattataaaacatgtctttatggactggtagaaggtatcctgggacagagacagagacattataaaacatgtctttatggactggtagaaggtatcctgggacagagacagaggaggggacattataaaacatgtctttatggactggtagaagGtatcctgggacagagacagaggaggggacattataaaacatgtctttatggactggtagaaggtatcctgggac
>TU1288193
ttataaaacatgtctttatggactggtagaaggtatcctgggacagagacagaggatgggacattataaaacatgtctttatggactggtagaaggtatcctgggacagagacagaggatgggacattataaaacatgtctttatggactggtagaaggtatcctgggacagagacagaggaggggacattataaaacatatatttatgG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1288187 False 364 lncRNA 0.44 2 98213480 98214288
TU1288186 False 481 lncRNA 0.43 2 98213983 98215847
TU1288193 True 210 lncRNA 0.40 2 98214583 98215847

Neighbor

gene id symbol gene type direction distance location
LOC110485327 LOC105012792 coding downstream 27191 98137074 ~ 98186289 (-)
LOC110518411 LOC106606198 coding downstream 211887 97979771 ~ 98001593 (-)
LOC110485313 LOC106535622 coding downstream 238732 97959753 ~ 97974748 (-)
LOC110487083 tigd1 coding downstream 264249 97947278 ~ 97949231 (-)
LOC110487090 LOC106606200 coding downstream 269609 97917737 ~ 97943871 (-)
LOC118936513 cog1 coding upstream 14516 98230363 ~ 98259687 (-)
LOC110487128 rogdi coding upstream 50208 98265920 ~ 98283153 (-)
LOC110517726 glyr1 coding upstream 67615 98283462 ~ 98316905 (-)
LOC110485331 ppl coding upstream 117284 98333131 ~ 98380912 (-)
LOC110487126 LOC106602016 coding upstream 350549 98566396 ~ 98571514 (-)
G1131814 LOC106592915 non-coding downstream 1839 98188889 ~ 98211641 (-)
G1131815 NA non-coding downstream 6243 98206763 ~ 98207237 (-)
G1131799 NA non-coding downstream 39072 98174145 ~ 98174408 (-)
G1131784 NA non-coding downstream 89773 98091189 ~ 98123707 (-)
G1131783 NA non-coding downstream 91822 98090221 ~ 98121658 (-)
G1131838 NA non-coding upstream 64754 98280601 ~ 98280801 (-)
G1131839 NA non-coding upstream 76298 98292145 ~ 98296429 (-)
G1131810 NA non-coding upstream 89310 98305157 ~ 98309208 (-)
G1131666 NA other downstream 352962 97857599 ~ 97860518 (-)
G1131720 NA other downstream 359887 97852786 ~ 97853593 (-)
LOC110538882 LOC106601977 other downstream 430657 97764189 ~ 97787224 (-)
G1131656 NA other downstream 500364 97712634 ~ 97713116 (-)
G1131863 NA other upstream 167123 98382970 ~ 98383815 (-)
G1132328 NA other upstream 790780 99006627 ~ 99010112 (-)
LOC118937838 LOC106606233 other upstream 837657 99052890 ~ 99059256 (-)
LOC110538840 LOC106601903 other upstream 875869 99090621 ~ 99092245 (-)

Expression


Co-expression Network