G1131560


Basic Information

Item Value
gene id G1131560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98230141 ~ 98231090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1287800
ACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCCCACATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCACACATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCACACATCATCAACACAATCTCATTAATGACTTGTTCAAACTGTAATATTGATTAATATCTTCTAAAAGTCTCTGTACAGTACAAGGTGTTTAACGAATACAAAACAGTCACACTCCTTATTTGGGTTCAGtgttaaatggcaccctattccctatatagtgggaATAGTTCCCATAggtccttgtcaaaagtagtgcactacatagtgggAATAGAGAGTGTCATTAGGGACATTAGCCCCTTATTTGGACATGCCAGAGAGCCAGCCCAGCTTGAATAGCGACGGCGGCGCCACGGGCTCCTCCTCCTGATTGGCTAGCTGTCTGAACAGGTTGCCAGGGCGGAAGGTGTCGTCATGGGCGGGTTTACAGGTGGG
>TU1287801
ACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCCCACATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCACACATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCACACATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCAACACAATCTCATTAATGACTTGTTCAAACTGTAATATTGATTAATATCTTCTAAAAGTCTCTGTACAGTACAAGGTGTTTAACGAATACAAAACAGTCACACTCCTTATTTGGGTTCAGtgttaaatggcaccctattccctatatagtgggaATAGTTCCCATAggtccttgtcaaaagtagtgcactacatagtgggAATAGAGAGTGTCATTAGGGACATTAGCCCCTTATTTGGACATGCCAGAGAGCCAGCCCAGCTTGAATAGCGACGGCGGCGCCACGGGCTCCTCCTCCTGATTGGCTAGCTGTCTGAACAGGTTGCCAGGGCGGAAGGTGTCGTCATGGGCGGGTTTACAGGTGGG
>TU1287802
ACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCCCACATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCACACATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCAACACAATCTCATTATCCATCTCCACTATGTTAATGAAATGAATCACACATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCAACACAATCTCATTAATGACTTGTTCAAACTGTAATATTGATTAATATCTTCTAAAAGTCTCTGTACAGTACAAGGTGTTTAACGAATACAAAACAGTCACACTCCTTATTTGGGTTCAGtgttaaatggcaccctattccctatatagtgggaATAGTTCCCATAggtccttgtcaaaagtagtgcactacatagtgggAATAGAGAGTGTCATTAGGGACATTAGCCCCTTATTTGGACATGCCAGAGAGCCAGCCCAGCTTGAATAGCGACGGCGGCGCCACGGGCTCCTCCTCCTGATTGGCTAGCTGTCTGAACAGGTTGCCAGGGCGGAAGGTGTCGTCATGGGCGGGTTTACAGGTGGG
>TU1287803
ACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCCCACATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCAACACAATCTCATTAATGACTTGTTCAAACTGTAATATTGATTAATATCTTCTAAAAGTCTCTGTACAGTACAAGGTGTTTAACGAATACAAAACAGTCACACTCCTTATTTGGGTTCAGtgttaaatggcaccctattccctatatagtgggaATAGTTCCCATAggtccttgtcaaaagtagtgcactacatagtgggAATAGAGAGTGTCATTAGGGACATTAGCCCCTTATTTGGACATGCCAGAGAGCCAGCCCAGCTTGAATAGCGACGGCGGCGCCACGGGCTCCTCCTCCTGATTGGCTAGCTGTCTGAACAGGTTGCCAGGGCGGAAGGTGTCGTCATGGGCGGGTTTACAGGTGGG
>TU1287804
ACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCCCACATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCAACACAATCTCATTATCCATCTCCACTATGTTAATGAAATGAATCACACATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCAACACAATCTCATTAATGACTTGTTCAAACTGTAATATTGATTAATATCTTCTAAAAGTCTCTGTACAGTACAAGGTGTTTAACGAATACAAAACAGTCACACTCCTTATTTGGGTTCAGtgttaaatggcaccctattccctatatagtgggaATAGTTCCCATAggtccttgtcaaaagtagtgcactacatagtgggAATAGAGAGTGTCATTAGGGACATTAGCCCCTTATTTGGACATGCCAGAGAGCCAGCCCAGCTTGAATAGCGACGGCGGCGCCACGGGCTCCTCCTCCTGATTGGCTAGCTGTCTGAACAGGTTGCCAGGGCGGAAGGTGTCGTCATGGGCGGGTTTACAGGTGGG
>TU1287805
ACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCCCACATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCACACATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCAACACAATCTCATTAATGACTTGTTCAAACTGTAATATTGATTAATATCTTCTAAAAGTCTCTGTACAGTACAAGGTGTTTAACGAATACAAAACAGTCACACTCCTTATTTGGGTTCAGtgttaaatggcaccctattccctatatagtgggaATAGTTCCCATAggtccttgtcaaaagtagtgcactacatagtgggAATAGAGAGTGTCATTAGGGACATTAGCCCCTTATTTGGACATGCCAGAGAGCCAGCCCAGCTTGAATAGCGACGGCGGCGCCACGGGCTCCTCCTCCTGATTGGCTAGCTGTCTGAACAGGTTGCCAGGGCGGAAGGTGTCGTCATGGGCGGGTTTACAGGTGGG
>TU1287806
ACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCCCACATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCACACATCAACACAATCTCATTATCTATCTCCACTATATTAATGAAATGAATCACACATCATCAACACAATCTCATTATCTATCTCCACTATGTTAATGAAATGAATCACACATCATCAACACAATCTCATTAATGACTTGTTCAAACTGTAATATTGATTAATATCTTCTAAAAGTCTCTGTACAGTACAAGGTGTTTAACGAATACAAAACAGTCACACTCCTTATTTGGGTTCAGtgttaaatggcaccctattccctatatagtgggaATAGTTCCCATAggtccttgtcaaaagtagtgcactacatagtgggAATAGAGAGTGTCATTAGGGACATTAGCCCCTTATTTGGACATGCCAGAGAGCCAGCCCAGCTTGAATAGCGACGGCGGCGCCACGGGCTCCTCCTCCTGATTGGCTAGCTGTCTGAACAGGTTGCCAGGGCGGAAGGTGTCGTCATGGGCGGGTTTACAGGTGGG

Function

NR:

description
conserved oligomeric Golgi complex subunit 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1287800 False 684 lncRNA 0.39 2 98230141 98231090
TU1287801 False 898 lncRNA 0.37 2 98230141 98231090
TU1287802 False 840 lncRNA 0.37 2 98230141 98231090
TU1287803 False 577 lncRNA 0.40 2 98230141 98231090
TU1287804 False 678 lncRNA 0.39 2 98230141 98231090
TU1287805 False 736 lncRNA 0.38 2 98230141 98231090
TU1287806 True 739 lncRNA 0.38 2 98230141 98231090

Neighbor

gene id symbol gene type direction distance location
LOC110516721 LOC105012791 coding upstream 11856 98187732 ~ 98218285 (+)
LOC118937837 LOC106594247 coding upstream 108063 98101643 ~ 98122078 (+)
LOC110485325 LOC105012794 coding upstream 139768 98065664 ~ 98090718 (+)
LOC110487112 LOC106594630 coding upstream 170690 98022211 ~ 98059451 (+)
LOC118937811 LOC106606197 coding upstream 212971 98003597 ~ 98017170 (+)
LOC118936514 smim22 coding downstream 28480 98259570 ~ 98268855 (+)
LOC110487124 LOC105006040 coding downstream 194670 98425760 ~ 98564239 (+)
LOC110516605 LOC106592968 coding downstream 745243 98976333 ~ 98977246 (+)
LOC110539183 LOC106606365 coding downstream 839906 99070996 ~ 99088300 (+)
epn3a LOC105006167 coding downstream 886311 99117401 ~ 99175955 (+)
G1131557 NA non-coding upstream 4542 98219753 ~ 98225599 (+)
G1131554 NA non-coding upstream 27601 98201817 ~ 98202540 (+)
G1131508 NA non-coding upstream 89820 98137923 ~ 98140321 (+)
G1131518 NA non-coding upstream 95791 98134151 ~ 98134350 (+)
G1131510 NA non-coding upstream 106093 98090990 ~ 98124048 (+)
G1131565 cog1 non-coding downstream 9658 98240748 ~ 98241565 (+)
G1131567 cog1 non-coding downstream 17007 98248097 ~ 98252334 (+)
G1131569 NA non-coding downstream 19193 98250283 ~ 98251210 (+)
G1131575 NA non-coding downstream 42110 98273200 ~ 98274541 (+)
G1131438 NA other upstream 408084 97820724 ~ 97822057 (+)
G1130780 LOC106606334 other upstream 1067062 97162262 ~ 97163079 (+)
LOC118937804 LOC106591169 other upstream 1528204 96676774 ~ 96702725 (+)
G1130570 alg1 other upstream 1596689 96618256 ~ 96633452 (+)
LOC110538761 LOC106606716 other upstream 2599566 95629494 ~ 95815227 (+)
G1132060 NA other downstream 493767 98724857 ~ 98725197 (+)
G1132058 NA other downstream 532869 98762440 ~ 98767257 (+)
G1132082 NA other downstream 551049 98782139 ~ 98783327 (+)
G1132093 NA other downstream 564668 98795758 ~ 98797512 (+)

Expression


Co-expression Network