G1131565 (cog1)


Basic Information

Item Value
gene id G1131565
gene name cog1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98240748 ~ 98241565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1287813
CCCTGCCATCCTCTAGTTTGGTACCCAGGGTAGCAGTGAGATATCTCAGGTCAAATAACAGCTGTAGAGACCTGTTCTGAGTCATAGGGAACagacagtccTTGTCCTGCGCTGTGTGTATGAGGTTCTGGTATTGGTGCAGCACCAGGTCCATGCAGCCTTGTAGTAACTCCTGTAGGGTGGGGCGGGGCACAGCATGACCCCCTACACCATTCACCTCCAGACACAGGTGGAACAGCAGAGACTGGACAAACCACGACGgCTGGACAGGAAGTCTGATCTTGGAGGTGACGCTGCTCCCTGACTCCGCCTCTTCCTGGATCTCTAGCTCCTCCCAGTTGGTGGCGTTTGCTAGGATAGCCCCGGCAGACTCTGCGTGCAGCGAGGTCGCAAAC
>TU1287812
tgtgtgttaccttgtcctgcgctgtgtgtgtgttaccttgtcctgcgctgtgtgtgtgtgttaccttgtcctgcgctgtgtgtgtgtgtgggttaccTTGTCCTGCGCTGTGTGTATGAGGTTCTGGTATTGGTGCAGCACCAGGTCCATGCAGCCTTGTAGTAACTCCTGTAGGGTGGGGCGGGGCACAGCATGACCCCCTACACCATTCACCTCCAGACACAGGTGGAACAGCAGAGACTGGACAAACCACGACGgCTGGACAGGAAGTCTGATCTTGGAGGTGACGCTGCTCCCTGACTCCGCCTCTTCCTGGATCTCTAGCTCCTCCCAGTTGGTGGCGTTTGCTAGGATAGCCCCGGCAGACTCTGCGTGCAGCGAGGTCGCAAAC

Function

symbol description
cog1 Predicted to act upstream of or within intra-Golgi vesicle-mediated transport and protein transport. Predicted to be located in membrane. Predicted to be part of Golgi transport complex. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIg. Orthologous to human COG1 (component of oligomeric golgi complex 1).

NR:

description
LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1287813 False 395 lncRNA 0.56 3 98240748 98241565
TU1287812 True 391 lncRNA 0.57 2 98240998 98241565

Neighbor

gene id symbol gene type direction distance location
LOC110516721 LOC105012791 coding upstream 22463 98187732 ~ 98218285 (+)
LOC118937837 LOC106594247 coding upstream 118670 98101643 ~ 98122078 (+)
LOC110485325 LOC105012794 coding upstream 150375 98065664 ~ 98090718 (+)
LOC110487112 LOC106594630 coding upstream 181297 98022211 ~ 98059451 (+)
LOC118937811 LOC106606197 coding upstream 223578 98003597 ~ 98017170 (+)
LOC118936514 smim22 coding downstream 18005 98259570 ~ 98268855 (+)
LOC110487124 LOC105006040 coding downstream 184195 98425760 ~ 98564239 (+)
LOC110516605 LOC106592968 coding downstream 734768 98976333 ~ 98977246 (+)
LOC110539183 LOC106606365 coding downstream 829431 99070996 ~ 99088300 (+)
epn3a LOC105006167 coding downstream 875836 99117401 ~ 99175955 (+)
G1131560 NA non-coding upstream 9658 98230141 ~ 98231090 (+)
G1131557 NA non-coding upstream 15149 98219753 ~ 98225599 (+)
G1131554 NA non-coding upstream 38208 98201817 ~ 98202540 (+)
G1131508 NA non-coding upstream 100427 98137923 ~ 98140321 (+)
G1131518 NA non-coding upstream 106398 98134151 ~ 98134350 (+)
G1131567 cog1 non-coding downstream 6532 98248097 ~ 98252334 (+)
G1131569 NA non-coding downstream 8718 98250283 ~ 98251210 (+)
G1131575 NA non-coding downstream 31635 98273200 ~ 98274541 (+)
G1131540 NA non-coding downstream 41382 98282947 ~ 98283150 (+)
G1131438 NA other upstream 418691 97820724 ~ 97822057 (+)
G1130780 LOC106606334 other upstream 1077669 97162262 ~ 97163079 (+)
LOC118937804 LOC106591169 other upstream 1538811 96676774 ~ 96702725 (+)
G1130570 alg1 other upstream 1607296 96618256 ~ 96633452 (+)
LOC110538761 LOC106606716 other upstream 2610173 95629494 ~ 95815227 (+)
G1132060 NA other downstream 483292 98724857 ~ 98725197 (+)
G1132058 NA other downstream 522394 98762440 ~ 98767257 (+)
G1132082 NA other downstream 540574 98782139 ~ 98783327 (+)
G1132093 NA other downstream 554193 98795758 ~ 98797512 (+)

Expression


Co-expression Network