Gene
RNA
| Item | Value |
|---|---|
| gene id | G1131567 |
| gene name | cog1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 98248097 ~ 98252334 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cog1 | Predicted to act upstream of or within intra-Golgi vesicle-mediated transport and protein transport. Predicted to be located in membrane. Predicted to be part of Golgi transport complex. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIg. Orthologous to human COG1 (component of oligomeric golgi complex 1). |
| description |
|---|
| conserved oligomeric Golgi complex subunit 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1287815 | False | 429 | lncRNA | 0.49 | 2 | 98248097 | 98248641 |
| TU1287816 | False | 387 | lncRNA | 0.51 | 2 | 98248097 | 98248715 |
| TU1287818 | True | 480 | lncRNA | 0.54 | 2 | 98248097 | 98252334 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110516721 | LOC105012791 | coding | upstream | 29812 | 98187732 ~ 98218285 (+) |
| LOC118937837 | LOC106594247 | coding | upstream | 126019 | 98101643 ~ 98122078 (+) |
| LOC110485325 | LOC105012794 | coding | upstream | 157724 | 98065664 ~ 98090718 (+) |
| LOC110487112 | LOC106594630 | coding | upstream | 188646 | 98022211 ~ 98059451 (+) |
| LOC118937811 | LOC106606197 | coding | upstream | 230927 | 98003597 ~ 98017170 (+) |
| LOC118936514 | smim22 | coding | downstream | 7236 | 98259570 ~ 98268855 (+) |
| LOC110487124 | LOC105006040 | coding | downstream | 173426 | 98425760 ~ 98564239 (+) |
| LOC110516605 | LOC106592968 | coding | downstream | 723999 | 98976333 ~ 98977246 (+) |
| LOC110539183 | LOC106606365 | coding | downstream | 818662 | 99070996 ~ 99088300 (+) |
| epn3a | LOC105006167 | coding | downstream | 865067 | 99117401 ~ 99175955 (+) |
| G1131565 | cog1 | non-coding | upstream | 6532 | 98240748 ~ 98241565 (+) |
| G1131560 | NA | non-coding | upstream | 17007 | 98230141 ~ 98231090 (+) |
| G1131557 | NA | non-coding | upstream | 22498 | 98219753 ~ 98225599 (+) |
| G1131554 | NA | non-coding | upstream | 45557 | 98201817 ~ 98202540 (+) |
| G1131508 | NA | non-coding | upstream | 107776 | 98137923 ~ 98140321 (+) |
| G1131575 | NA | non-coding | downstream | 20866 | 98273200 ~ 98274541 (+) |
| G1131540 | NA | non-coding | downstream | 30613 | 98282947 ~ 98283150 (+) |
| G1131543 | NA | non-coding | downstream | 34429 | 98286763 ~ 98289488 (+) |
| G1131592 | NA | non-coding | downstream | 67541 | 98319875 ~ 98320186 (+) |
| G1131438 | NA | other | upstream | 426040 | 97820724 ~ 97822057 (+) |
| G1130780 | LOC106606334 | other | upstream | 1085018 | 97162262 ~ 97163079 (+) |
| LOC118937804 | LOC106591169 | other | upstream | 1546160 | 96676774 ~ 96702725 (+) |
| G1130570 | alg1 | other | upstream | 1614645 | 96618256 ~ 96633452 (+) |
| LOC110538761 | LOC106606716 | other | upstream | 2617522 | 95629494 ~ 95815227 (+) |
| G1132060 | NA | other | downstream | 472523 | 98724857 ~ 98725197 (+) |
| G1132058 | NA | other | downstream | 511625 | 98762440 ~ 98767257 (+) |
| G1132082 | NA | other | downstream | 529805 | 98782139 ~ 98783327 (+) |
| G1132093 | NA | other | downstream | 543424 | 98795758 ~ 98797512 (+) |
