G1131995 (LOC106602015)


Basic Information

Item Value
gene id G1131995
gene name LOC106602015
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98560788 ~ 98561455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1288425
TCAAATATTCCATCTAGATACAGATGGGTTGTGAGTGGAAGTAAGTGCTGATCATACATACTTACTGTGTTGCCCGGTTAGGGTCCATGGCTGGGTCAGGTGGTTCACCCACCTCTGAGTCACTGAGAGGGGCTGTATCATCGGTGCTGCTCAGGGATCTGACCCCCTCCACCAGCTCCCTGGCCTCTGCAGCTAACTGGCAGGCTGGGTCTGGGATGGGAGAGGGGGTCTCTGGACTGTCTGTGGCTGGAGAGGTCCTGCTACTCCCATTTTCCATTCCAAACAAGCTGGGGGTGGTGAGCACTTTGTGAACATTCTGAGAAAtaaacagtcagtcagttagccagtcagttagccagccagttaaccagccagtcagttagccagccagtcagtcagccagttaaccagccagtcagttagccagccagtcagtcagccag

Function

NR:

description
syntaxin-binding protein 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1288425 True 443 lncRNA 0.54 3 98560788 98561455

Neighbor

gene id symbol gene type direction distance location
LOC110485331 ppl coding downstream 179876 98333131 ~ 98380912 (-)
LOC110517726 glyr1 coding downstream 243883 98283462 ~ 98316905 (-)
LOC110487128 rogdi coding downstream 277635 98265920 ~ 98283153 (-)
LOC118936513 cog1 coding downstream 301144 98230363 ~ 98259687 (-)
LOC110485327 LOC105012792 coding downstream 374499 98137074 ~ 98186289 (-)
LOC110487126 LOC106602016 coding upstream 4941 98566396 ~ 98571514 (-)
LOC110514497 LOC106602019 coding upstream 204650 98766105 ~ 98906443 (-)
LOC110539185 hgs coding upstream 420306 98981732 ~ 99019633 (-)
LOC110538838 LOC105029615 coding upstream 460503 99021958 ~ 99027957 (-)
btr02 LOC106606318 coding upstream 466713 99028168 ~ 99040834 (-)
G1131980 NA non-coding downstream 48510 98511591 ~ 98512278 (-)
G1131977 NA non-coding downstream 51086 98509259 ~ 98509702 (-)
G1131972 NA non-coding downstream 63626 98495879 ~ 98497162 (-)
G1131969 NA non-coding downstream 70741 98489007 ~ 98490047 (-)
G1131967 NA non-coding downstream 78515 98481515 ~ 98482273 (-)
G1132001 NA non-coding upstream 13951 98575406 ~ 98576626 (-)
G1132012 NA non-coding upstream 53689 98615144 ~ 98617785 (-)
G1132016 NA non-coding upstream 91536 98652991 ~ 98653513 (-)
G1132228 NA non-coding upstream 118835 98680290 ~ 98680647 (-)
G1132229 NA non-coding upstream 120863 98682318 ~ 98682578 (-)
G1131863 NA other downstream 176973 98382970 ~ 98383815 (-)
LOC110485313 LOC106535622 other downstream 586068 97959753 ~ 97974748 (-)
G1131666 NA other downstream 700270 97857599 ~ 97860518 (-)
G1131720 NA other downstream 707195 97852786 ~ 97853593 (-)
G1132328 NA other upstream 445172 99006627 ~ 99010112 (-)
LOC118937838 LOC106606233 other upstream 492049 99052890 ~ 99059256 (-)
LOC110538840 LOC106601903 other upstream 530261 99090621 ~ 99092245 (-)
G1132564 NA other upstream 604493 99165948 ~ 99166607 (-)
G1132569 LOC106606209 other upstream 612210 99173665 ~ 99177478 (-)

Expression


Co-expression Network