XLOC_030104 (gtf2h2)


Basic Information

Item Value
gene id XLOC_030104
gene name gtf2h2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 26221011 ~ 26233068 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058862
GTACAAAAGATGCACTAAAGTAAATACCGGTGAATCGCGTTGTTTTTGTAGTAGGCTACTAACATGTAGTAGGCTACGTATTAGTATTTCATTACTAAAAAATCCAGTTTATATGCATGCTCCTTTATTTGTTGTTATACGACTCGAACCTAAGAGTGTCTAGGAAGAGAACAGGCGCAGAAACCTCTTACAAAGTACTAGTCCTGTCTAGAATAACAGCATAACCCTCGAAATAAGTTACATCCTGTGAGAATTATAAACCATGGACGAAGAACCAGAAAGAACAAAACGCTGGGAAGGAGGATATGAACGAACATGGGAAGTGCTGAAGGAGGATGAGTCTGGGTCTCTCAAAGCTACTGTGGAGGACATTCTTTTCCAGGCAAAGAGGAAAAGAGTGTTTGAGAGTCATGGACAAGTTCGGCTTGGGatgATGCGGCACCTCTTTGTAATCATTGACTCTTCTAGATCAATGGAAGACCAAGACCTGAAGCCAAACAGACTGACCTCCACCCTGAAGCTGATGGAGCATTTTGTGGAGGAATACTTTGACCAGAATCCAATCAGTCAGATTGGGATCATTACCACCAAAAACAAGAGGGCGGAGAAGCTCACTGATCTTGCAGGGAACCCTAAGAAGCATATAACAGCTCTGAGGAAAGCTGTAGACTCCACATGTGTCGGGGAACCGTCCCTCTACAACTCTCTCAACATGGCTCTGCAGACTCTGAAACACATGCCTGCTCACACAAGCAGAGAAGTGCTGGTTATTTTCAGCAGTCTTACTACCTGTGACCCAGGCAACATCTATGAGCTCATCAAAACTCTCAATGGTTTGAAGATCCGAGTGTCAGTGATTGGCCTGTCGGCAGAGGTTCGGGTGTGCACCATTCTCACAAGAGAAACCGGAGGATCCTATAATGTGATACTGGATGAGAGTCATTTTAAAGAGCTGCTGCTTCTCCATGTGAAGCCTCCTCCTGCCAGCTCCTCCTCAGAGTGCTCCCTCATCCGCATGGgtTTTCCCCAGCATGTCATTGCGTCTCTGTCTGATCAGGATGCCAAGCCCTCATTCAGCATGGCACACCTTGACAGCAGTAGTGAGCCAGAACTCAGTCTGGGTGGATACTACTGTCCTCAGTGCAGAGCCAAGTACACAGAGCTGCCGGTGGAGTGTAAAGTGTGTGGTCTGACTTTAGTCTCTGCTCCTCATTTGGCCCGTTCCTTCCACCACCTCTTCCCTCTGGAGGCCTTCCAGGAGACCCCGCTGGAGGAGTATGAGGGAGAGAGGTTCTGCGAAGCTTGCCAAGGAGAGTTGAAGGACAAAAGTGTGTTTACTTGTCTAGCATGTAAAAAGGTGTTCTGTGTGGAATGTGACATCTTCATACACGACACACTGCACTGCTGTCCTGGCTGCATGCAGATTGACGGGACGTCCTGAGATCTGACCTGATGACAAATGTGAACGTCAGCAGTCCATATATAATCTGAAAGATATAGAAAATGAAGTGGAAGTAAGCAAACAGAGATTTACATTCTCACCGAATCGCAGTTTAAGGTACTGGACGGCAATGCTTGGGAGTAGTTGCCGTTGGCTTTCTGTTTACGTAAATCATTGTGTATGAAAGGGCGCCCCCTATGGGGAAAAAAGCGTCTTCGGACTCAAATGAAACAAGCCGACGAGGTTTTGGTAGTGCACACTTTTTCTAGTGTcccattcattttttataaaaccGTTGTGATAGACTTTAAACGCCAGCTCTTTCTAAATTTTGTACCTCACATGCCATGGGAATGTACTTGCCTATGCTTAGTGAATCACAAACAGACCTGTGGATATTTAAGtggaaaatgtttaaacaaattaaagttttttttgtttataaca
>TCONS_00058863
AAAGATGCACTAAAGTAAATACCGGTGAATCGCGTTGTTTTTGTAGTAGGCTACTAACATGTAGTAGGCTACGTATTAGTATTTCATTACTAAAAAATCCAGTTTATATGCATGCTCCTTTATTTGTTGTTATACGACTCGAACCTAAGAGTGTCTAGGAAGAGAACAGGCGCAGAAACCTCTTACAAAGTACTAGTCCTGTCTAGAATAACAGCATAACCCTCGAAATAAGTTACATCCTGTGAGAATTATAAACCATGGACGAAGAACCAGAAAGAACAAAACGCTGGGAAGGAGGATATGAACGAACATGGGAAGTGCTGAAGGAGGATGAGTCTGGGTCTCTCAAAGCTACTGTGGAGGACATTCTTTTCCAGGCAAAGAGGAAAAGAGTGTTTGAGAGTCATGGACAAGTTCGGCTTGGGatgATCAATGGAAGACCAAGACCTGAAGCCAAACAGACTGACCTCCACCCTGAAGCTGATGGAGCATTTTGTGGAGGAATACTTTGACCAGAATCCAATCAGTCAGATTGGGATCATTACCACCAAAAACAAGAGGGCGGAGAAGCTCACTGATCTTGCAGGGAACCCTAAGAAGCATATAACAGCTCTGAGGAAAGCTGTAGACTCCACATGTGTCGGGGAACCGTCCCTCTACAACTCTCTCAACATGGCTCTGCAGACTCTGAAACACATGCCTGCTCACACAAGCAGAGAAGTGCTGGTTATTTTCAGCAGTCTTACTACCTGTGACCCAGGCAACATCTATGAGCTCATCAAAACTCTCAATGGTTTGAAGATCCGAGTGTCAGTGATTGGCCTGTCGGCAGAGGTTCGGGTGTGCACCATTCTCACAAGAGAAACCGGAGGATCCTATAATGTGATACTGGATGAGAGTCATTTTAAAGAGCTGCTGCTTCTCCATGTGAAGCCTCCTCCTGCCAGCTCCTCCTCAGAGTGCTCCCTCATCCGCATGGgtTTTCCCCAGCATGTCATTGCGTCTCTGTCTGATCAGGATGCCAAGCCCTCATTCAGCATGGCACACCTTGACAGCAGTAGTGAGCCAGAACTCAGTCTGGGTGGATACTACTGTCCTCAGTGCAGAGCCAAGTACACAGAGCTGCCGGTGGAGTGTAAAGTGTGTGGTCTGACTTTAGTCTCTGCTCCTCATTTGGCCCGTTCCTTCCACCACCTCTTCCCTCTGGAGGCCTTCCAGGAGACCCCGCTGGAGGAGTATGAGGGAGAGAGGTTCTGCGAAGCTTGCCAAGGAGAGTTGAAGGACAAAAGTGTGTTTACTTGTCTAGCATGTAAAAAGGTGTTCTGTGTGGAATGTGACATCTTCATACACGACACACTGCACTGCTGTCCTGGCTGCATGCAGATTGACGGGACGTCCTGAGATCTGACCTGATGACAAATGTGAACGTCAGCAGTCCATATATAATCTGAAAGATATAGAAAATGAAGTGGAAGTAAGCAAACAGAGATTTACATTCTCACCGAATCGCAGTTTAAGGTACTGGACGGCAATGCTTGGGAGTAGTTGCCGTTGGCTTTCTGTTTACGTAAATCATTGTGTATGAAAGGGCGCCCCCTATGGGGAAAAAAGCGTCTTCGGACTCAAATGAAACAAGCCGACGAGGTTTTGGTAGTGCACACTTTTTCTAGTGTcccattcattttttataaaaccGTTGTGATAGACTTTAAACGCCAGCTCTTTCTAAATTTTGTACCTCACATGCCATGGGAATGTACTTGCCTATGCTTAGTGAATCACAAACAGACCTGTGGATATTTAAGtggaaaatgtttaaacaaattaaagttttttttgtttataaca
>TCONS_00058864
catgcaaactatacacagaaatgccaactgacccagccgaggcttaaaccagcaagcttcttgctgtgaggcgacagcactacctactgcgccactgcgtcgcctgccACAAGAACAATCTTACACAAATATTGGTCACCTCTAGGGACAATGtcccataaacaaaaataatgcagGCTTAGGAACTCTGTATCCAAACACCTCAGAAATAACAATCTGCACACATCATCTCAAAACGGTTGATTTCTAGATAGAGTTCTAAAATGATGATCGTATATTTGATCATGActtgaaacaacaacaaaaaaataaccgTAACTGTATTTTGTACCATATTATTAGACACCTTGACAGCAGTAGTGAGCCAGAACTCAGTCTGGGTGGATACTACTGTCCTCAGTGCAGAGCCAAGTACACAGAGCTGCCGGTGGAGTGTAAAGTGTGTGGTGGGTCCTCAATTCTTCAACATCCCTCTTCTTCAAGTGATCCTCCATGTGTTCAGTCCTCATTGTCTGTGTCTACTCTCTGGTGCAGGTCTGACTTTAGTCTCTGCTCCTCATTTGGCCCGTTCCTTCCACCACCTCTTCCCTCTGGAGGCCTTCCAGGAGACCCCGcttgtgtgtatttattattattttcaaatgaaTTGAAGCTTGATTATTTTTTCCCCTCCACAGGTGTTTACTTGTCTAGCATGTAAAAAGGTGTTCTGTGTGGAATGTGACATCTTCATACACGACACACTGCACTGCTGTCCTGGCTGCATGCAGATTGACGGGACGTCCTGAGATCTGACCTGATGACAAATGTGAACGTCAGCAGTCCATATATAATCTGAAAGATATAGAAAATGAAGTGGAAGTAAGCAAACAGAGATTTACATTCTCACCGAATCGCAGTTTAAGGTACTGGACGGCAATGCTTGGGAGTAGTTGCCGTTGGCTTTCTGTTTACGTAAATCATTGTGTATGAAAGGGCGCCCCCTATGGGGAAAAAAGCGTCTTCGGACTCAAATGAAACAAGCCGACGAGGTTTTGGTAGTGCACACTTTTTCTAGTGTcccattcattttttataaaaccGTTGTGATAGACTTTAAACGCCAGCTCTTTCTAAATTTTGTACCTCACATGCCATGGGAATGTACTTGCCTATGCTTAGTGAATCACAAACAGACCTGTGGATATTTAAGtggaaaatgtttaaacaaattaaagttttttttgtttataaca

Function

symbol description
gtf2h2 Predicted to enable zinc ion binding activity. Predicted to be involved in nucleotide-excision repair and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA repair and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIH holo complex. Orthologous to several human genes including GTF2H2C (GTF2H2 family member C).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006281 DNA repair biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005675 transcription factor TFIIH holo complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03420 Nucleotide excision repair
ko05203 Viral carcinogenesis
ko03021 Transcription machinery
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-1959 Predicted to enable zinc ion binding activity. Predicted to be involved in nucleotide-excision repair and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA repair and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIH holo complex. Orthologous to several human genes including GTF2H2C (GTF2H2 family member C).

Ensembl:

ensembl_id ENSDARG00000016514

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058862 False 1888 mRNA 0.45 15 26221011 26233068
TCONS_00058863 False 1848 processed_transcript 0.45 15 26221016 26233068
TCONS_00058864 True 1235 lncRNA 0.42 2 26229218 26233068

Neighbor

gene id symbol gene type direction distance location
XLOC_030103 oclnb coding upstream 140 26212621 ~ 26220871 (+)
XLOC_030102 marveld2b coding upstream 9165 26204561 ~ 26211846 (+)
XLOC_030101 AK6 coding upstream 17766 26199537 ~ 26203245 (+)
XLOC_030100 ankrd34bb coding upstream 61090 26156079 ~ 26159921 (+)
XLOC_030099 dhfr coding upstream 74523 26138313 ~ 26146488 (+)
XLOC_030105 si:ch211-214j8.1 coding downstream 15312 26248380 ~ 26261125 (+)
XLOC_030106 NA coding downstream 246606 26479674 ~ 26481301 (+)
XLOC_030107 tango2 coding downstream 453211 26686279 ~ 26726220 (+)
XLOC_030108 tmem150aa coding downstream 495047 26728115 ~ 26750510 (+)
XLOC_030109 si:ch211-102c2.8 coding downstream 532173 26765241 ~ 26771984 (+)
XLOC_030094 dre-mir-204-1 non-coding upstream 248851 25972068 ~ 25972160 (+)
XLOC_030090 NA non-coding upstream 510579 25701025 ~ 25710432 (+)
XLOC_030085 NA non-coding upstream 906259 25311263 ~ 25314752 (+)
XLOC_030083 NA non-coding upstream 971335 25248198 ~ 25249676 (+)
XLOC_030079 NA non-coding upstream 1341446 24873805 ~ 24879565 (+)
XLOC_030114 NA non-coding downstream 662966 26896034 ~ 26906786 (+)
XLOC_030117 NA non-coding downstream 716643 26949711 ~ 27051459 (+)
XLOC_030118 NA non-coding downstream 842935 27076003 ~ 27091304 (+)
XLOC_030126 NA non-coding downstream 1421182 27654250 ~ 27654718 (+)

Expression


Co-expression Network