G1132560


Basic Information

Item Value
gene id G1132560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99155321 ~ 99156561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1289198
gaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacagactactagaccacaacaacagactactagaccacaacacaaactactagaccacaacaacaactgactccccacacactgactccacacacactgactccccacacactgactccacacacactgactccacacatactgactccccacacactgactccacacacactgactccacacacactgactccccacacactgactccccacacactgactccacacacactgactccacacacactgactccacacacactgactccacacacactgactccacacacactgactccacacacactgactccacacatactgactcccacatactgactccacacacactgactccccacacactgactccacacatactgactccccacacactgactccacacactgactcccacatactgactcccacatactgactccacacacactgactccacacacatactgactccacacacatactgac
>TU1289199
gaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacagactactagaccacaacaacagactactagaccacaacacaaactactagaccacaacaacaactgactccccacacactgactccacacacactgactctacacacactgactccacacacactgactccacacacatactgactccacacacacactgactccacacacactgactccacacacactgactccacacacactgactccacacacactgactccacacatactgactcccacatactgactccacacacactgactccccacacactgactccacacatactgactccccacacactgactccacacactgactcccacatactgactcccacatactgactccacacacactgactccacacacatactgactccacacacatactgac
>TU1289200
gaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacacagactactagaccacaacaacagactactagaccacaacaacagactactagaccacaacacaaactactagaccacaacaacaactgactccccacacactgactccacacacactgactccacacacactgactccacacacactgactccacacacactgactccacacacactgactccacacatactgactccccacacactgactccccacacactgactccacacacactgactccacacacactgactccacacacactgactccacacacactgactccacacacactgactccacacacactgactccacacatactgactcccacatactgactccacacacactgactccccacacactgactccacacatactgactccccacacactgactccacacactgactcccacatactgactcccacatactgactccacacacactgactccacacacatactgactccacacacatactgac

Function

NR:

description
PREDICTED: ATP-dependent 6-phosphofructokinase, liver type-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1289198 False 684 lncRNA 0.50 6 99155321 99156561
TU1289199 False 598 lncRNA 0.48 5 99155321 99156561
TU1289200 True 669 lncRNA 0.49 5 99155321 99156561

Neighbor

gene id symbol gene type direction distance location
LOC110538840 LOC106601903 coding downstream 63076 99090621 ~ 99092245 (-)
LOC118937838 LOC106606233 coding downstream 96480 99052890 ~ 99059256 (-)
LOC110538834 LOC106601838 coding downstream 109701 99042019 ~ 99045620 (-)
btr02 LOC106606318 coding downstream 114487 99028168 ~ 99040834 (-)
LOC110538838 LOC105029615 coding downstream 129933 99021958 ~ 99027957 (-)
LOC110538845 LOC106606260 coding upstream 21525 99178086 ~ 99183106 (-)
LOC110517411 LOC106602071 coding upstream 62053 99218614 ~ 99231888 (-)
LOC110538879 metrnl coding upstream 194968 99351529 ~ 99380971 (-)
LOC110538877 atp5h coding upstream 382747 99539308 ~ 99556315 (-)
LOC118937841 LOC106606276 coding upstream 407171 99563732 ~ 99631073 (-)
G1132555 NA non-coding downstream 6646 99148294 ~ 99148675 (-)
G1132544 NA non-coding downstream 27524 99127429 ~ 99127797 (-)
G1132540 NA non-coding downstream 37589 99117406 ~ 99117732 (-)
G1132538 NA non-coding downstream 42159 99112895 ~ 99113162 (-)
G1132537 NA non-coding downstream 42698 99112393 ~ 99112623 (-)
G1132561 NA non-coding upstream 1410 99157971 ~ 99158661 (-)
G1132562 NA non-coding upstream 5249 99161810 ~ 99162135 (-)
G1132565 NA non-coding upstream 10411 99166972 ~ 99167250 (-)
G1132567 LOC106606209 non-coding upstream 14683 99171244 ~ 99171487 (-)
G1132568 NA non-coding upstream 15312 99171873 ~ 99172154 (-)
G1132328 NA other downstream 145209 99006627 ~ 99010112 (-)
G1131863 NA other downstream 771506 98382970 ~ 98383815 (-)
LOC118936513 cog1 other downstream 895634 98230363 ~ 98259687 (-)
G1132564 NA other upstream 9387 99165948 ~ 99166607 (-)
G1132569 LOC106606209 other upstream 17104 99173665 ~ 99177478 (-)
G1132625 NA other upstream 169951 99326512 ~ 99326924 (-)
LOC110539068 LOC106583735 other upstream 683878 99829430 ~ 100834884 (-)

Expression


Co-expression Network