G1132569 (LOC106606209)


Basic Information

Item Value
gene id G1132569
gene name LOC106606209
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99173665 ~ 99177478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1289215
TGTTTCACAAGTAATGATCACAGCAATGAGAGAGggaaaataatcatgatatcaatTCATACATTCTAATATGCGTTGCTTTATAGGGGTCGAATGCTAGCTTCCTAACTTCCACCGAATTCAATTGAATTTCCACTTCtccccattgacatcaatgcaaaacTCAACTTGAAGTGAGAGCGTTAGGATTTGCCCCGCTATAGTGAGTCCTGCAGTGGTTCCGGTCTCTAAGAAAAGCAGATTTCACTCAATTATCCCTCAAAAGGGGGCCCTCCAGTTCACTATAACACACTAGAACTACCTTAGAATCTCTCTCGCCATCACCGCAGTTCCATTCCAACAGCAAACCATCCTTTTACACGAGAACTCAGTCAGACTGAGCCTTACTAGGCCTAATGTAACAAAAAGGAAGCTTAAAACTCAAGTGTTCATTATGTGGATGGGGGTTGGCTGGCGTCTCATCATCGGCGTGGAATGTTCTATGCCCGTTCTCAGAAATCGGAGTTGTAGTCGGCGCTAGGAATCATTCGGGAACATTTGCAGATAGAAATAGATTGAACAGAGGCGACACACTTCCCTTATTCTATCTGGTTGACAATCATATCTGTTCTATATGATACATTTTTATCTGAGTTGCAGTCTGTGCTGGGAAACGTTTTGAACAGATAGAAATAGATTGAATAGAGCCGACACGCTTCCCCTATTCTATCTGGCAGACAATTATATCTGTTCTACATGATACATTTCTATCTGAGCATTCTGTAACGTTACATCCTCCTGAACAGACTTGTCTGAGTTATCCCCTGGGGCATCATGGGAGAGATAATAGGAGAGAAAGAGCCAACCAATGAAAGCAGTCCAGAGAGCGGATCGACCAATCAGCATAGAGCAGTGCGGCAGGAACAGTGGGCGTCCTGTCCCAGTGCATTGTGGTCCGTCGGTCGGAGAGATAAGCAGGCATATCTGGTGTACAATCAGTTCAGTGCTGGATCAGGAGCAACAGTGAGGAGCCAATCAAACTAAAGTATGCAGCAGAGTGGGCGGGGCATGTGACTAGGTAAGAAGCAGTTGGAAAAGCAGTTaactaacctggtcccagatctgtttctgctgtATAGCCAATGACCCATAGGAGTTGGcaggacagcacaaacagatctgagaccaggttaGCGCAGACACACTCACTCTGTAAAGTATTGCTAATTACTTTAAGATGGAAACATCTTCACCTACTGTGCTTTCTATAGCGGAGGATGAGCTTGGGCATCGGcgtgtatgtacagtatctgtcatgGCTTAGGATTAGGTTACTATAGACCTAAACACGTTCTGGGAAtattctctttctttctacctctcGTTCATCCTGCATCACTCTCTTCAGCAGAGAGGAGTAACAGGACAGGTTGTGGTAGAGCAGATCGTAGCAGAGGAAGCAATCTAAGCGTTACAGTACTAGTACCTATATGGGCccatagaaaaacaacaacaaaataacaacttAAGGGGATTATCAGTTCTGTCTGAATTCCAGTTGTTGAGTCTTGAGTTTAGATTGACAGAAAATAACCTAATAAGAGTCATTTCTATTTCCTCTGTTCCATCCACCAGAGTTagaggacagacagaccaacaTGAATGCCGGCCGTGCGACAGCTGGGTGGACGTCCTGTCACATCTGACTACAAAACATCGACCGTCATTTTCTATAAATTTCTCGACGATTCGTGGACGCCCAGCAGGCCACCGCTCGTGGACAGCCAGCAGGACACCGCTCGTGGACAGCCAGCAGGACACCGCTCGTGGACGCCCAGCAGGTGTTCTACTGCGCATGGCAGAAGTTGGTGTTGGTCTATCTTCCATCTTAGCGGTTTCAGTTCAGCTGGACAGACATCACAGGAAGGGATTCTGACTGTGCTGCTCTCCCAGAGACGAGATGGAGGAAAGAGGTAACAGGGGCTGTGGCAGCCCAGGTATGTCCAGGGATCCATGGGTGGGCTgggtgagggaggagggcagGCTGGCCGGCTGGTGGCTGGCGGGCAGGGGCAGAGAAGCACTgtagggcagggagggaggaccGGAGGGGGGGACGGGGGACGTGGAGCTGGGACGCATCTGATTCAGAGTGAGACGAGGCTGTTCACTCTGGAACGGGTTGAGGGGA
>TU1289210
GCATAATCATGTGTGCAGTAGTATCTTCGATGTAGCCTAACTATGCTGGAGTagaaatacagtaactgtcataTAGATGTGTGGAAATACAATAACTGTCATACAGGTGTGTGGAAATACAATAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcataTAGgtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatatagGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatacaggtgtgtgaaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatataggtgtgtagaaatacagtaactgtcataTAGGTGTGTGGAAATAGAGTAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtgaaaatacagtaactgtcataTAGGTGTGTGGAAATAGAGTAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtgaaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacagGTGTTTGGCCTCCGGGGGGCAGACAGACATTGTGTAGAAAAGTCAACTCTTTGAAGAATGTGCTTCTCTAAGCATTCGATATGTAGAAACATTCCATTATAAAGTGTTTGATATTACAATCTAGCTaggcatatattatatatatatatatatattacacacagtcaTGTATTAACAGATGTAAAAAGGTTGAATGGTATCAAGTCAAGAAATATAGTATTGATCAACATGATCATGAAATAAAAGCTGTAAAATATGAACGAATGCAGATGCCAGGTGTCGTTATTAGTTCATCATAGCCTTATATTTGACGATGACAATCAGTGTTTCACAAGTAATGATCACAGCAATGAGAGAGggaaaataatcatgatatcaatTCATACATTCTAATATGCGTTGCTTTATAGGGGTCGAATGCTAGCTTCCTAACTTCCACCGAATTCAATTGAATTTCCACTTCtccccattgacatcaatgcaaaacTCAACTTGAAGTGAGAGCGTTAGGATTTGCCCCGCTATAGTGAGTCCTGCAGTGGTTCCGGTCTCTAAGAAAAGCAGATTTCACTCAATTATCCCTCAAAAGGGGGCCCTCCAGTTCACTATAACACACTAGAACTACCTTAGAATCTCTCTCGCCATCACCGCAGTTCCATTCCAACAGCAAACCATCCTTTTACACGAGAACTCAGTCAGACTGAGCCTTACTAGGCCTAATGTAACAAAAAGGAAGCTTAAAACTCAAGTGTTCATTATGTGGATGGGGGTTGGCTGGCGTCTCATCATCGGCGTGGAATGTTCTATGCCCGTTCTCAGAAATCGGAGTTGTAGTCGGCGCTAGGAATCATTCGGGAACATTTGCAGATAGAAATAGATTGAACAGAGGCGACACACTTCCCTTATTCTATCTGGTTGACAATCATATCTGTTCTATATGATACATTTTTATCTGAGTTGCAGTCTGTGCTGGGAAACGTTTTGAACAGATAGAAATAGATTGAATAGAGCCGACACGCTTCCCCTATTCTATCTGGCAGACAATTATATCTGTTCTACATGATACATTTCTATCTGAGCATTCTGTAACGTTACATCCTCCTGAACAGACTTGTCTGAGTTATCCCCTGGGGCATCATGGGAGAGATAATAGGAGAGAAAGAGCCAACCAATGAAAGCAGTCCAGAGAGCGGATCGACCAATCAGCATAGAGCAGTGCGGCAGGAACAGTGGGCGTCCTGTCCCAGTGCATTGTGGTCCGTCGGTCGGAGAGATAAGCAGGCATATCTGGTGTACAATCAGTTCAGTGCTGGATCAGGAGCAACAGTGAGGAGCCAATCAAACTAAAGTATGCAGCAGAGTGGGCGGGGCATGTGACTAGGTAAGAAGCAGTTGGAAAAGCAGTTaactaacctggtcccagatctgtttctgctgtATAGCC
>TU1289213
GCATAATCATGTGTGCAGTAGTATCTTCGATGTAGCCTAACTATGCTGGAGTagaaatacagtaactgtcataTAGATGTGTGGAAATACAATAACTGTCATACAGGTGTGTGGAAATACAATAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcataTAGGTGTGTGGAAATACAATAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcataTAGGTGTGTGGAAATACAATAACTGTCATACAGGTGTGTGgaaatacagtaactgtcataTAGGTGTGTGGAAATACAATAACTGTCATATAGGTGTGTGGAAATACAGTAACTTTCATACAGGTGTGTGgaaatacagtaactgtcatacagGTGTTTGGCCTCCGGGGGGCAGACAGACATTGTGTAGAAAAGTCAACTCTTTGAAGAATGTGCTTCTCTAAGCATTCGATATGTAGAAACATTCCATTATAAAGTGTTTGATATTACAATCTAGCTaggcatatattatatatatatatatatattacacacagtcaTGTATTAACAGATGTAAAAAGGTTGAATGGTATCAAGTCAAGAAATATAGTATTGATCAACATGATCATGAAATAAAAGCTGTAAAATATGAACGAATGCAGATGCCAGGTGTCGTTATTAGTTCATCATAGCCTTATATTTGACGATGACAATCAGTGTTTCACAAGTAATGATCACAGCAATGAGAGAGggaaaataatcatgatatcaatTCATACATTCTAATATGCGTTGCTTTATAGGGGTCGAATGCTAGCTTCCTAACTTCCACCGAATTCAATTGAATTTCCACTTCtccccattgacatcaatgcaaaacTCAACTTGAAGTGAGAGCGTTAGGATTTGCCCCGCTATAGTGAGTCCTGCAGTGGTTCCGGTCTCTAAGAAAAGCAGATTTCACTCAATTATCCCTCAAAAGGGGGCCCTCCAGTTCACTATAACACACTAGAACTACCTTAGAATCTCTCTCGCCATCACCGCAGTTCCATTCCAACAGCAAACCATCCTTTTACACGAGAACTCAGTCAGACTGAGCCTTACTAGGCCTAATGTAACAAAAAGGAAGCTTAAAACTCAAGTGTTCATTATGTGGATGGGGGTTGGCTGGCGTCTCATCATCGGCGTGGAATGTTCTATGCCCGTTCTCAGAAATCGGAGTTGTAGTCGGCGCTAGGAATCATTCGGGAACATTTGCAGATAGAAATAGATTGAACAGAGGCGACACACTTCCCTTATTCTATCTGGTTGACAATCATATCTGTTCTATATGATACATTTTTATCTGAGTTGCAGTCTGTGCTGGGAAACGTTTTGAACAGATAGAAATAGATTGAATAGAGCCGACACGCTTCCCCTATTCTATCTGGCAGACAATTATATCTGTTCTACATGATACATTTCTATCTGAGCATTCTGTAACGTTACATCCTCCTGAACAGACTTGTCTGAGTTATCCCCTGGGGCATCATGGGAGAGATAATAGGAGAGAAAGAGCCAACCAATGAAAGCAGTCCAGAGAGCGGATCGACCAATCAGCATAGAGCAGTGCGGCAGGAACAGTGGGCGTCCTGTCCCAGTGCATTGTGGTCCGTCGGTCGGAGAGATAAGCAGGCATATCTGGTGTACAATCAGTTCAGTGCTGGATCAGGAGCAACAGTGAGGAGCCAATCAAACTAAAGTATGCAGCAGAGTGGGCGGGGCATGTGACTAGGTAAGAAGCAGTTGGAAAAGCAGTTaactaacctggtcccagatctgtttctgctgtATAGCC
>TU1289211
GCATAATCATGTGTGCAGTAGTATCTTCGATGTAGCCTAACTATGCTGGAGTagaaatacagtaactgtcataTAGATGTGTGGAAATACAATAACTGTCATACAGGTGTGTGGAAATACAATAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcataTAGgtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcataTAGGTGTGTGGAAATAGAGTAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatatagGTGTGTGGAAATAGAGTAACTGTCATACAGGTGTTTGGCCTCCGGGGGGCAGACAGACATTGTGTAGAAAAGTCAACTCTTTGAAGAATGTGCTTCTCTAAGCATTCGATATGTAGAAACATTCCATTATAAAGTGTTTGATATTACAATCTAGCTaggcatatattatatatatatatatatattacacacagtcaTGTATTAACAGATGTAAAAAGGTTGAATGGTATCAAGTCAAGAAATATAGTATTGATCAACATGATCATGAAATAAAAGCTGTAAAATATGA
>TU1289212
GCATAATCATGTGTGCAGTAGTATCTTCGATGTAGCCTAACTATGCTGGAGTagaaatacagtaactgtcataTAGATGTGTGGAAATACAATAACTGTCATACAGGTGTGTGGAAATACAATAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcataTAGgtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcataTAGgtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatatagGTGTGTGGAAATAGAGTAACTGTCATACAGGTGTTTGGCCTCCGGGGGGCAGACAGACATTGTGTAGAAAAGTCAACTCTTTGAAGAATGTGCTTCTCTAAGCATTCGATATGTAGAAACATTCCATTATAAAGTGTTTGATATTACAATCTAGCTaggcatatattatatatatatatatatattacacacagtcaTGTATTAACAGATGTAAAAAGGTTGAATGGTATCAAGTCAAGAAATATAGTATTGATCAACATGATCATGAAATAAAAGCTGTAAAATATGA
>TU1289214
GCATAATCATGTGTGCAGTAGTATCTTCGATGTAGCCTAACTATGCTGGAGTagaaatacagtaactgtcataTAGATGTGTGGAAATACAATAACTGTCATACAGGTGTGTGGAAATACAATAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcataTAGgtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcataTAGgtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatatagGTGTGTGGAAATAGAGTAACTGTCATACAGGTGTTTGGCCTCCGGGGGGCAGACAGACATTGTGTAGAAAAGTCAACTCTTTGAAGAATGTGCTTCTCTAAGCATTCGATATGTAGAAACATTCCATTATAAAGTGTTTGATATTACAATCTAGCTaggcatatattatatatatatatatatattacacacagtcaTGTATTAACAGATGTAAAAAGGTTGAATGGTATCAAGTCAAGAAATATAGTATTGATCAACATGATCATGAAATAAAAGCTGTAAAATATGA
>TU1289216
GCATAATCATGTGTGCAGTAGTATCTTCGATGTAGCCTAACTATGCTGGAGTagaaatacagtaactgtcataTAGATGTGTGGAAATACAATAACTGTCATACAGGTGTGTGGAAATACAATAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcataTAGGTGTGTGGAAATACAATAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcataTAGGTGTGTGGAAATACAATAACTGTCATACAGGTGTGTGgaaatacagtaactgtcataTAGGTGTGTGGAAATACAATAACTGTCATATAGGTGTGTGGAAATAGAGTAACTGTCATACAGGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatacagGTGTGTGgaaatacagtaactgtcatataggtgtgtggaaatacagtaactgtcatacaggtgtgtggaaatacagtaactgtcatacagGTGTTTGGCCTCCGGGGGGCAGACAGACATTGTGTAGAAAAGTCAACTCTTTGAAGAATGTGCTTCTCTAAGCATTCGATATGTAGAAACATTCCATTATAAAGTGTTTGATATTACAATCTAGCTaggcatatattatatatatatatatatattacacacagtcaTGTATTAACAGATGTAAAAAGGTTGAATGGTATCAAGTCAAGAAATATAGTATTGATCAACATGATCATGAAATAAAAGCTGTAAAATATGA

Function

NR:

description
PREDICTED: protein FAM83G-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1289215 False 2170 TUCP 0.48 2 99173665 99175908
TU1289210 False 2270 lncRNA 0.40 4 99174789 99177478
TU1289213 False 1940 lncRNA 0.41 2 99174789 99177478
TU1289211 False 755 lncRNA 0.35 5 99175974 99177478
TU1289212 False 695 lncRNA 0.35 4 99175974 99177478
TU1289214 False 665 lncRNA 0.35 4 99175974 99177478
TU1289216 True 905 lncRNA 0.36 4 99175974 99177478

Neighbor

gene id symbol gene type direction distance location
LOC110538840 LOC106601903 coding downstream 82544 99090621 ~ 99092245 (-)
LOC118937838 LOC106606233 coding downstream 115948 99052890 ~ 99059256 (-)
LOC110538834 LOC106601838 coding downstream 129169 99042019 ~ 99045620 (-)
btr02 LOC106606318 coding downstream 133955 99028168 ~ 99040834 (-)
LOC110538838 LOC105029615 coding downstream 149401 99021958 ~ 99027957 (-)
LOC110538845 LOC106606260 coding upstream 608 99178086 ~ 99183106 (-)
LOC110517411 LOC106602071 coding upstream 41136 99218614 ~ 99231888 (-)
LOC110538879 metrnl coding upstream 174051 99351529 ~ 99380971 (-)
LOC110538877 atp5h coding upstream 361830 99539308 ~ 99556315 (-)
LOC118937841 LOC106606276 coding upstream 386254 99563732 ~ 99631073 (-)
G1132568 NA non-coding downstream 2635 99171873 ~ 99172154 (-)
G1132567 LOC106606209 non-coding downstream 3302 99171244 ~ 99171487 (-)
G1132565 NA non-coding downstream 7539 99166972 ~ 99167250 (-)
G1132562 NA non-coding downstream 12654 99161810 ~ 99162135 (-)
G1132561 NA non-coding downstream 16128 99157971 ~ 99158661 (-)
G1132574 LOC106606261 non-coding upstream 9729 99187207 ~ 99187957 (-)
G1132595 NA non-coding upstream 80760 99258238 ~ 99293690 (-)
G1132599 NA non-coding upstream 89133 99266611 ~ 99269289 (-)
G1132605 NA non-coding upstream 103972 99281450 ~ 99281916 (-)
G1132564 NA other downstream 8182 99165948 ~ 99166607 (-)
G1132328 NA other downstream 164677 99006627 ~ 99010112 (-)
G1131863 NA other downstream 790974 98382970 ~ 98383815 (-)
G1132625 NA other upstream 149034 99326512 ~ 99326924 (-)
LOC110539068 LOC106583735 other upstream 662961 99829430 ~ 100834884 (-)
G1133028 NA other upstream 746582 99924060 ~ 99925126 (-)
G1134054 NA other upstream 1032979 100210457 ~ 100211148 (-)

Expression


Co-expression Network