G1133008


Basic Information

Item Value
gene id G1133008
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99878878 ~ 99880576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1289852
CCTTTGCTACAACTATGAAAACACAAAAGCATGTGCAGATGACTTTTTATaacgacaaaaaaaaaaataatagccAAGGACAAAGGCATGCGGTGGATGGAGAAAATATCAGCAGCCTAAACTAATCATTAGTGTTCAATGtcacgtactaaactaatcattagtgttcaacgtcacgtactaaactaatcattagtgttcaatgtcacgtactaaactaatcattagtgttcaatgtcacgtactaaactaatcattagtgttcaatgtcatgtactaaactaatcattagtgttcaacgtcacgtactaaactaatcattagtgttcaacgtcacgtactaaactaatcagtagtgttcaatgtcacgtactaaactaatcattagtgttcaatgtcacgtactaaactaatcagtagtgttcaatgtcacgtactaaactaatcattagtgttcaatgtcacatactaaactaatcattagtgttcaatgtcacgtactaaactaatcagtagtgttcaatgtcacgtactaaactaatcagtagtgttcaatgtcacgtactaaactaatcaGTAGTGTTCAATGTCACATACTAAACTAATCAGTAGTGTTCAATGtcacgtactaaactaatcagtagtgttcaatgtcacgtactaaactaatcagtagtgttcaatgtcacgtactaaactaatcaGTAGTGTTCAATGTCACGTACTAAACTAATCGGTAGTGTTCAATGTCACGTGCGCAAGTACAGTGAAATTCCTTTCCTGCAAGTCCTAAACCCAACAATCAATCAATAAACACACAAGAAATACAAATAGAAGAGAAGAAATGAAAAGAACACTAGAAAAGAAGAAGCGATGTACAGAGTCAGTTCCATATTTATGAGCAGGGAGACTGGAATGATAGATGTAGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1289852 True 931 lncRNA 0.34 2 99878878 99880576

Neighbor

gene id symbol gene type direction distance location
LOC110538873 NA coding downstream 21622 99850156 ~ 99857256 (-)
LOC110485298 LOC106603827 coding downstream 206240 99639639 ~ 99672638 (-)
LOC118937841 LOC106606276 coding downstream 247805 99563732 ~ 99631073 (-)
LOC118937859 LOC106606280 coding downstream 274220 99603751 ~ 99604658 (-)
LOC110538877 atp5h coding downstream 322563 99539308 ~ 99556315 (-)
LOC110539071 LOC106602020 coding upstream 66160 99946736 ~ 99965247 (-)
LOC118937866 NA coding upstream 85847 99966423 ~ 99968463 (-)
LOC110539073 LOC106606306 coding upstream 89098 99969674 ~ 99985905 (-)
LOC118937853 tmem114 coding upstream 377654 100258230 ~ 100295591 (-)
carhsp1 LOC106592621 coding upstream 553675 100434251 ~ 100462726 (-)
G1132898 LOC106574355 non-coding downstream 6349 99806609 ~ 99872529 (-)
G1133000 NA non-coding downstream 18804 99859645 ~ 99860074 (-)
G1132978 NA non-coding downstream 85616 99789870 ~ 99793262 (-)
G1132971 NA non-coding downstream 113275 99763738 ~ 99765603 (-)
G1133009 NA non-coding upstream 1996 99882572 ~ 99883918 (-)
G1133012 NA non-coding upstream 5424 99886000 ~ 99886219 (-)
G1133026 LOC106602045 non-coding upstream 37098 99917674 ~ 99919868 (-)
G1133030 NA non-coding upstream 50045 99930621 ~ 99943583 (-)
G1132996 NA non-coding upstream 95066 99975642 ~ 99976958 (-)
G1132625 NA other downstream 551954 99326512 ~ 99326924 (-)
LOC110538845 LOC106606260 other downstream 695963 99178086 ~ 99183106 (-)
G1132569 LOC106606209 other downstream 702970 99173665 ~ 99177478 (-)
G1132564 NA other downstream 712271 99165948 ~ 99166607 (-)
LOC110538840 LOC106601903 other downstream 786640 99090621 ~ 99092245 (-)
G1133028 NA other upstream 43484 99924060 ~ 99925126 (-)
G1134054 NA other upstream 329881 100210457 ~ 100211148 (-)
G1134117 NA other upstream 540381 100420957 ~ 100423066 (-)
G1134183 NA other upstream 623029 100503605 ~ 100504088 (-)

Expression


Co-expression Network