XLOC_030118


Basic Information

Item Value
gene id XLOC_030118
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 27076003 ~ 27091304 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061706
GGCTCAACTTCCCCCTGTTTATGAGGGTTAGCAGGCAGCCACTCAACTTTATGAGGGAccgaaaatgaaaaaataatgatcCCATCCATTGTAAAAGTTCAACCTGCTGCAGAGAGAAAGGTGCTGAAGTCAACTGTAGTAATAGACTGGAAAGAAAATGACGAGTAACACCTTTCTGCACAAGCATGTcgCTGTGCAAGACAGACTGAATATTGTCCCAGAGGAGCTGTTTGGCGCTTCCTGAGTAGCAGACATGCCACACATGATGCAAACTAATCCTCATTATCAAAGCTTCTTACTCCACACCATGCTGAGAGGAAGACACTTTTACTCTAATAAGGTTTGGCACTAGAACACACGTTTAATGCCAAACATTTGTTCTCAAATAATGAAAACACCGAAAGCATCGACACCTTTACCCGTACAGCATTCTATTTTAACCAAACCGCATGCGTGCGTACGCAATACATGATTAATTACTACGAAACTTTCAAATTTGTTCAGTGGAAATTTTGCTGATGTTGTGTAACCGTATCAACACTTTGTGGGTTTCCCAAAAACGACCCAAGTGCTTTGACTCGTAGCCAGAGCCAGGTTCATTGAAGATTTGCATTTAAAACTGTGACAGGTGATAAATAATGCACACGTGGGGAGCAATGCAGACTCCAGACTCACTACAAAAAgccttattttattaatgttctcACCACCGAAACGGTAGTTGATAATGGAAGCTCATTTAATCCTGAAGGAATAGTAGGACAAAGTCGaaacataaatatgtaaataatagcCCTGTGCTAGATTACTCCAATTTGTCAATGTCAGGGCAACCGTTGCATGCCCTCCTCAACTAACTCACGTGCTCATTCCTGCACGCTCTCACTACACCCTCAGGAAGTGTTTCGTTAACTAATATTTAATATTCACTTTACATATCATGTTTGTTTGACACATGACAAGTCAGTTTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061706 True 972 lncRNA 0.41 2 27076003 27091304

Neighbor

gene id symbol gene type direction distance location
XLOC_030117 NA coding upstream 24544 26949711 ~ 27051459 (+)
XLOC_030116 tm2d2 coding upstream 149476 26921033 ~ 26926527 (+)
XLOC_030115 tbx3b coding upstream 157241 26913120 ~ 26918762 (+)
XLOC_030114 NA coding upstream 169217 26896034 ~ 26906786 (+)
XLOC_030113 araf coding upstream 206611 26856253 ~ 26869392 (+)
XLOC_030119 unc5db coding downstream 46169 27137473 ~ 27397612 (+)
XLOC_030120 hdr coding downstream 313642 27404946 ~ 27415081 (+)
XLOC_030121 cyb561a3a coding downstream 329721 27421025 ~ 27429216 (+)
XLOC_030122 zgc:153409 coding downstream 338568 27429872 ~ 27430247 (+)
XLOC_030123 histh1l coding downstream 341654 27432958 ~ 27434351 (+)
XLOC_030106 NA non-coding upstream 594702 26479674 ~ 26481301 (+)
XLOC_030094 dre-mir-204-1 non-coding upstream 1103843 25972068 ~ 25972160 (+)
XLOC_030090 NA non-coding upstream 1365571 25701025 ~ 25710432 (+)
XLOC_030126 NA non-coding downstream 562946 27654250 ~ 27654718 (+)
XLOC_030132 NA non-coding downstream 1190865 28282169 ~ 28292411 (+)
XLOC_030135 NA non-coding downstream 1302044 28393348 ~ 28491518 (+)
XLOC_030136 NA non-coding downstream 1406630 28497934 ~ 28503177 (+)
XLOC_030137 NA non-coding downstream 1469699 28561003 ~ 28562137 (+)

Expression


Co-expression Network