G1134050


Basic Information

Item Value
gene id G1134050
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 100196958 ~ 100197982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1291310
GTGTAAGGAAGTGTTTAGCTGCGTGAGGAGAGCTGGGCGTTTCCTCTCTCAGCCCCTGGAGCACTGTAAATCAACAACAGCTTCATGTTTCATATTTACATAAACCTCatctttttttttctcacaaGTCATATATATTTCTAATTAatcaaacagtttttttttcaaaGTGTAAAGGCTGAGTTCTAGAAAATAACATTACAAAGGAGGTCACATTACAAATGATATCAAAACCCAAATGAAAGACAAGTCaatgtaaacaaaaacaaaaagccTAACTAACAAACATCAACAGCGTATAGGACACTGACATGTTTCACAGCCGTGTAGTAGTGAAGACCGTgtacaggctgtgtgtgtgtcggcaAAATagtacagctgacccccccccccccaaaaaaaatgccATGACAGTATGTACATTATGATTGCATTACTTGTAGAGTGTCATGATCCATCTGGATAGGACGACTCCATAGAGAACACGAGAAAAGCTTTTTCCCCAAACCCTTGGTGTTGTAGCCTACAACTAAAACATTACAGTCGTGTATTTTGTGTTTTCAGAGAACACCTTCGTTGCACAGCTCAAACGTCTCCATTAATACATtgttggtatatatatatatatatatatatattttttttttgtttgttcagTTTTCATTTTTCATCGGGTACAAATAATCATAGTCGTATAATTTCTGgacagaaaaaaaaaacgaaacacAAAAGGTAAAATagacattttttatatttttttaaattctctcCCATAATATAAAATTCAGCAACTATATCAATGGATATACTGTAATTTCTATAAAAACAACATCTGTCCCAGTATCATTATTATTACTATGGGATAACCTATATCTATATAAAGGGTTTTGACTAAAGGGACTAGATGATGGTTTCAACAGTAAACCCTCCATGGAGAAAAAGACTAC
>TU1291309
GTGTAAGGAAGTGTTTAGCTGCGTGAGGAGAGCTGGGCGTTTCCTCTCTCAGCCCCTGGAGCACTGTAAATCAACAACAGCTTCATGTTTCATATTTACATAAACCTCatctttttttttctcacaaGTCATATATATTTCTAATTAatcaaacagtttttttttcaaaGTGTAAAGGCTGAGTTCTAGAAAATAACATTACAAAGGAGGTCACATTACAAATGATATCAAAACCCAAATGAAAGACAAGTCaatgtaaacaaaaacaaaaagccTAACTAACAAACATCAACAGCGTATAGGACACTGACATGTTTCACAGCCGTGTAGTAGTGAAGACCGTgtacaggctgtgtgtgtgtcggcaAAATagtacagctgacccccccccccccaaaaaaaatgccATGACAGTATGTACATTATGATTGCATTACTTGTAGAGTGTCATGATCCATCTGGATAGGACGACTCCATAGAGAACACGAGAAAAGCTTTTTCCCCAAACCCTTGGTGTTGTAGCCTACAACTAAAACATTACAGTCGTGTATTTTGTGTTTTCAGAGAACACCTTCGTTGCACAGCTCAAACGTCTCCATTAATACATtgttggtatatatatatat
>TU1291312
aaggagggagggagggaggggggaggaaaggagggaggaaaggagggagggaggggggatatcAGGAAGAAAAGAGGGGTGTAAGGAAGTGTTTAGCTGCGTGAGGAGAGCTGGGCGTTTCCTCTCTCAGCCCCTGGAGCACTGTAAATCAACAACAGCTTCATGTTTCATATTTACATAAACCTCatctttttttttctcacaaGTCATATATATTTCTAATTAatcaaacagtttttttttcaaaGTGTAAAGGCTGAGTTCTAGAAAATAACATTACAAAGGAGGTCACATTACAAATGATATCAAAACCCAAATGAAAGACAAGTCaatgtaaacaaaaacaaaaagccTAACTAACAAACATCAACAGCGTATAGGACACTGACATGTTTCACAGCCGTGTAGTAGTGAAGACCGTgtacaggctgtgtgtgtgtcggcaAAATagtacagctgacccccccccccccaaaaaaaatgccATGACAGTATGTACATTATGATTGCATTACTTGTAGAGTGTCATGATCCATCTGGATAGGACGACTCCATAGAGAACACGAGAAAAGCTTTTTCCCCAAACCCTTGGTGTTGTAGCCTACAACTAAAACATTACAGTCGTGTATTTTGTGTTTTCAGAGAACACCTTCGTTGCACAGCTCAAACGTCTCCATTAATACATtgttggtatatatatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1291310 False 947 lncRNA 0.35 1 100196958 100197904
TU1291309 False 626 lncRNA 0.38 1 100197279 100197904
TU1291312 True 704 lncRNA 0.41 1 100197279 100197982

Neighbor

gene id symbol gene type direction distance location
LOC110539073 LOC106606306 coding downstream 211053 99969674 ~ 99985905 (-)
LOC118937866 NA coding downstream 228495 99966423 ~ 99968463 (-)
LOC110539071 LOC106602020 coding downstream 231711 99946736 ~ 99965247 (-)
LOC110538873 NA coding downstream 339702 99850156 ~ 99857256 (-)
LOC110485298 LOC106603827 coding downstream 524320 99639639 ~ 99672638 (-)
LOC118937853 tmem114 coding upstream 60248 100258230 ~ 100295591 (-)
carhsp1 LOC106592621 coding upstream 236269 100434251 ~ 100462726 (-)
nat15 natu coding upstream 275572 100473554 ~ 100499497 (-)
LOC118937869 NA coding upstream 292673 100490607 ~ 100491915 (-)
eci1 LOC106596253 coding upstream 332202 100530184 ~ 100543453 (-)
G1134048 NA non-coding downstream 737 100194261 ~ 100196221 (-)
G1134045 NA non-coding downstream 7290 100187588 ~ 100189668 (-)
G1134003 NA non-coding downstream 126085 100070567 ~ 100070873 (-)
G1133998 NA non-coding downstream 156563 100039330 ~ 100040395 (-)
G1133054 NA non-coding downstream 171081 100025469 ~ 100025877 (-)
G1134052 NA non-coding upstream 7344 100205326 ~ 100205734 (-)
G1134072 NA non-coding upstream 50320 100248302 ~ 100252231 (-)
G1134073 NA non-coding upstream 50759 100248741 ~ 100252743 (-)
G1134106 mettl22 non-coding upstream 120654 100318636 ~ 100330277 (-)
G1134110 NA non-coding upstream 128441 100326423 ~ 100328120 (-)
G1133028 NA other downstream 271832 99924060 ~ 99925126 (-)
G1132625 NA other downstream 870034 99326512 ~ 99326924 (-)
LOC110538845 LOC106606260 other downstream 1014043 99178086 ~ 99183106 (-)
G1132569 LOC106606209 other downstream 1021050 99173665 ~ 99177478 (-)
G1132564 NA other downstream 1030351 99165948 ~ 99166607 (-)
G1134054 NA other upstream 12475 100210457 ~ 100211148 (-)
G1134117 NA other upstream 222975 100420957 ~ 100423066 (-)
G1134183 NA other upstream 305623 100503605 ~ 100504088 (-)

Expression


Co-expression Network