XLOC_030121 (cyb561a3a)


Basic Information

Item Value
gene id XLOC_030121
gene name cyb561a3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 27421025 ~ 27429216 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058896
CACTACACTTCCCATGGAACCTTGCGGTCAAACCGGAAAATGTCTTCACACCAGCTGCATTCTACCAAAACATCGTAATCCTCATCTTTAAAACGAAATCGAAAATCATAATGGGGAATTATGGAAAGAGGAACTGAGCTCAAGAAAAACGCTGTCACGAGTTTATTTGATATTTTGGAGACACCAAAGCTCTTACAGGATGAGAGGAATTGTTGGATTTTACATAACCTATCTTCTGTGTCTGATTTTGGGGATCGCCTGTGTGGTTTTAGTTGTTCACTGGAATTTCATGTATCGAGATGGATTTGCATGGGACGGCTCATCCAAGAACTTCAACTGGCACCCAGTGCTCATGGTCACTGGCATGCTGGTTCTTTATGGGAATGCGGCCGTAGTGTACCGTATTCCTCTGACGTGGGGTCACAATAAGCTCCCCTGGAAGCTGCTACATGCTGGGCTTCTGCtcctttctttcattttttctgtTATCGGACTTTGTGCTGTGTTTAACTTCCACAATGTACACCACACAGCCAACCTTTATTCTCTCCATAGCTGGGTGGGGATTTGCACCGCTGCACTTTTCACTGCACAGTGGGTCATGGGATTTACCTCATTTCTCTTACCTTGCACCCCAATGGCCGTGCGTGCTTTTGTAAAGCCAACTCATGTTTGGATGGGAGCAATGATCTTGGTACTGAGCATTGTGTCCTGCATCTCAGGGATCAACGAAAAGCTCTTTTTTGTACTAAAGGAAACCACCAATGGGACAAAGCCTTATTCTGCCTTGCCACCAGAGGCAGTTGCTGCTAATTCTTTGGGAGTCATCATTGTAGCATTTGGATTGGTTGTTTTAAAAATCTTATCCAATCAGATGTGGCAACGTCCTGAGCCTGGCGATGATGAGGGAGTTTACaggCCACTTGCTTATGATGGAAGCTGATGTCTCAGAGATGAATGTCTGAAAGCAGTATGTTTAATTGCATTCTGGATTCCAAAGAAATCAAAGTTACAAAATATTATCTTTATGTTTCTTGTTACTCAGAGctggaaagacttttttt
>TCONS_00058897
ATTTTGGAGACACCAAAGGTACTGTACATTAACGCATGTGCTCTTCTAAAACACCCAGCTTGGTTGAAAAGTGCTCTTTCTTATTTGTTTGCATTTGAGAGTATCTCTTACAGGATGAGAGGAATTGTTGGATTTTACATAACCTATCTTCTGTGTCTGATTTTGGGGATCGCCTGTGTGGTTTTAGTTGTTCACTGGAATTTCATGTATCGAGATGGATTTGCATGGGACGGCTCATCCAAGAACTTCAACTGGCACCCAGTGCTCATGGTCACTGGCATGCTGGTTCTTTATGGGAATGCGGCCGTAGTGTACCGTATTCCTCTGACGTGGGGTCACAATAAGCTCCCCTGGAAGCTGCTACATGCTGGGCTTCTGCtcctttctttcattttttctgtTATCGGACTTTGTGCTGTGTTTAACTTCCACAATGTACACCACACAGCCAACCTTTATTCTCTCCATAGCTGGGTGGGGATTTGCACCGCTGCACTTTTCACTGCACAGTGGGTCATGGGATTTACCTCATTTCTCTTACCTTGCACCCCAATGGCCGTGCGTGCTTTTGTAAAGCCAACTCATGTTTGGATGGGAGCAATGATCTTGGTACTGAGCATTGTGTCCTGCATCTCAGGGATCAACGAAAAGCTCTTTTTTGTACTAAAGGAAACCACCAATGGGACAAAGCCTTATTCTGCCTTGCCACCAGAGGCAGTTGCTGCTAATTCTTTGGGAGTCATCATTGTAGCATTTGGATTGGTTGTTTTAAAAATCTTATCCAATCAGATGTGGCAACGTCCTGAGCCTGGCGATGATGAGGGAGTTTACaggCCACTTGCTTATGATGGAAGCTGATGTCTCAGAGATGAATGTCTGAAAGCAGTATGTTTAATTGCATTCTGGATTCCAAAGAAATCAAAGTTACAAAATATTATCTTTATGTTTCTTGTTACTCAGAGctggaaagactttttttttttgcttaagattTGAGTGTGCTCTGTTGCTCTTGCTTTTGGAAATAGTGTAACGCATAAGGCAAAATATCAAATATTGTCATTGCTGAATATAAGTGCTTTTGCTTATTTATTACTTGTGAAGATCTCTGtgtataataaatgattaaaacattttctaaaaca

Function

symbol description
cyb561a3a Predicted to enable transmembrane ascorbate ferrireductase activity. Predicted to be involved in cellular iron ion homeostasis. Predicted to be located in late endosome membrane. Predicted to be active in lysosomal membrane. Orthologous to human CYB561A3 (cytochrome b561 family member A3).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005768 endosome cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-374 Predicted to enable transmembrane ascorbate ferrireductase activity. Predicted to be involved in cellular iron ion homeostasis. Predicted to be located in late endosome membrane. Predicted to be active in lysosomal membrane. Orthologous to human CYB561A3 (cytochrome b561 family member A3).

Ensembl:

ensembl_id ENSDARG00000056281

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058896 False 1064 mRNA 0.43 7 27421025 27429050
TCONS_00058897 True 1145 mRNA 0.41 6 27421639 27429216

Neighbor

gene id symbol gene type direction distance location
XLOC_030120 hdr coding upstream 5944 27404946 ~ 27415081 (+)
XLOC_030119 unc5db coding upstream 23413 27137473 ~ 27397612 (+)
XLOC_030118 NA coding upstream 329721 27076003 ~ 27091304 (+)
XLOC_030117 NA coding upstream 369566 26949711 ~ 27051459 (+)
XLOC_030116 tm2d2 coding upstream 494498 26921033 ~ 26926527 (+)
XLOC_030122 zgc:153409 coding downstream 656 27429872 ~ 27430247 (+)
XLOC_030123 histh1l coding downstream 3742 27432958 ~ 27434351 (+)
XLOC_030124 loxl2b coding downstream 5385 27434601 ~ 27538745 (+)
XLOC_030125 zmat4a coding downstream 153901 27583117 ~ 27743830 (+)
XLOC_030126 NA coding downstream 225034 27654250 ~ 27654718 (+)
XLOC_030114 NA non-coding upstream 514239 26896034 ~ 26906786 (+)
XLOC_030106 NA non-coding upstream 939724 26479674 ~ 26481301 (+)
XLOC_030094 dre-mir-204-1 non-coding upstream 1448865 25972068 ~ 25972160 (+)
XLOC_030132 NA non-coding downstream 852953 28282169 ~ 28292411 (+)
XLOC_030135 NA non-coding downstream 964132 28393348 ~ 28491518 (+)
XLOC_030136 NA non-coding downstream 1068718 28497934 ~ 28503177 (+)
XLOC_030137 NA non-coding downstream 1131787 28561003 ~ 28562137 (+)

Expression


Co-expression Network