G1134117


Basic Information

Item Value
gene id G1134117
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 100420957 ~ 100423066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1291426
TTCATTAAAATGTGATTCTGGTTTTTATTTTAGGATACATAAAGAGGATGCTTCATAGACAACAATAATTAAGAGATCTGCAATTAACCTTTAACCTCACGgaacaatgtaaacaaacatAGCAATGCTTCTACTGTTGTTAAGGGTTAACAGGAAATCAGCTCTCTATGCAATACTGATTGGGCTGGTTAACAAGACAGgtatcatcgtcatcatcaccactgtcatcatcatcctcatcactgtcatcatcaccactgtcatcatcatcactgtcatcatcatcatcatcatcatggccATATTATAAAGCTTCTACAGTGCGGATGCTGAAGCCGTCTCCTTGGTGCTACTGCTGCTATTTCAACCTGTccacaacatttaaaaaaaacaaacaacaggCATTCAGAACAACGTTGACACCTTGTGCTGTACATCAACAATGAGTCCAGTCGTTTCACGAGGAAACCCGATGAATATGGCAAGATGCACTCTAATACGACTACGTCCCAAACAAGTCAACaaatataatacatatttttATATTAGCGGTCCTGACTGCAAAAAAACCTGCCTCCAATTTAAACATGGGTATATCTGTAGGTAAGTATGGTTGTGTGTTAATGGTTAATTAAAATAGACTGTTAGCCCTGACGTACAGTGAGTCTGGAACCCAGTTCTCCATTCCTTCAACCCCAAAGGAAGTTCAGGAACAACAACATGCAGACACACTACATCATCTAATATAATATTCTCCCTTCACAAAATCCCAAATGTCTGACTTGGATTTATCTCAACCCCAAAAATGAAAGATAATTGTTCTGTTTAAAAAAGAGCTAGGACACTCAGAGGACCCACAGAACCCAAACTAGGACATCATCTCAAGGGTCAGGGGTTAAGAATCGGCGTGCGGCGGCCATTTTGTATCATTACAACCTGGTTTAGGTTAGCTTGCTGATAACCACTCCTGTTAGGTGTGTTTGTTTTCGAAATATCTCGCTGTGCCTTCTTCATCTGTTAGGGAGTTGGAGGGTTTGTGTGATATGACCTAAAATAAGACTATGTTTTGTGCTTTGTGCCTTTTTGCAGGCGTATCATTAGGACATTACTGGGACATGAGGAATGCTAGGACTGCCACGTGAGCAATGGGACAaattcaagtgtgtgtgtttgagtatgtgttgaagggatacttcgggattgtGGCagcgaggccctttatctacttccccagagtcagataaacTCCTGGATTCcagttttatgtctctgtgtcccttTATCTaattccccagagtcagatgaactcccGGATACCAGTTGTATGTCTCCTTGTCCAGgttgaaggaagttagaggtagtttcacgagccaacgtttccagtcattgcactagcGCTAGTTAGCATTTGCGCTAGCGCTAGTTAGCATTTGCGCTAGCGCTAGTTAGCATTTGCGCTAGCGCTAGTTGGCAACTTCTTTCAAACAGCACACAgataacattaaaaaaaatggtatccacgagtatCATCTGACTTtggggaaggagagaaaaaaaaaagggcttcattgccaaaatcccataGCATCCCTTTTAGGTGTATGTGTTACTGTGTGAACCTCTGTTATAGGTTAAGACTCTCGTGCTTCCCTCTCTCCTACACCGCGTCCCCAGTTGGTCTCGGCcctatgttggtgttttggcCCCAGTCCAGTGTGGACGGACGGTACCGGGGGGCAGCGTTCTAGTTGTGTTCTGCCAGGACGTCGCTGAACACGTTCAGGAACATGTGAACATGGTGCTCTTTAAACACCAGAGCAGGGCGGAACCGGATGGACCGATCTCCACAGCCACC
>TU1291427
TTCATTAAAATGTGATTCTGGTTTTTATTTTAGGATACATAAAGAGGATGCTTCATAGACAACAATAATTAAGAGATCTGCAATTAACCTTTAACCTCACGgaacaatgtaaacaaacatAGCAATGCTTCTACTGTTGTTAAGGGTTAACAGGAAATCAGCTCTCTATGCAATACTGATTGGGCTGGTTAACAAGACAGgtatcatcgtcatcatcactgtcatcaccactgtcatcatcatcctcatcactgtcatcatcaccactgtcatcatcatcactgtcatcatcatcatcatcatcatggccATATTATAAAGCTTCTACAGTGCGGATGCTGAAGCCGTCTCCTTGGTGCTACTGCTGCTATTTCAACCTGTccacaacatttaaaaaaaacaaacaacaggCATTCAGAACAACGTTGACACCTTGTGCTGTACATCAACAATGAGTCCAGTCGTTTCACGAGGAAACCCGATGAATATGGCAAGATGCACTCTAATACGACTACGTCCCAAACAAGTCAACaaatataatacatatttttATATTAGCGGTCCTGACTGCAAAAAAACCTGCCTCCAATTTAAACATGGGTATATCTGTAGGTAAGTATGGTTGTGTGTTAATGGTTAATTAAAATAGACTGTTAGCCCTGACGTACAGTGAGTCTGGAACCCAGTTCTCCATTCCTTCAACCCCAAAGGAAGTTCAGGAACAACAACATGCAGACACACTACATCATCTAATATAATATTCTCCCTTCACAAAATCCCAAATGTCTGACTTGGATTTATCTCAACCCCAAAAATGAAAGATAATTGTTCTGTTTAAAAAAGAGCTAGGACACTCAGAGGACCCACAGAACCCAAACTAGGACATCATCTCAAGGGTCAGGGGTTAAGAATCGGCGTGCGGCGGCCATTTTGTATCATTACAACCTGGTTTAGGTTAGCTTGCTGATAACCACTCCTGTTAGGTGTGTTTGTTTTCGAAATATCTCGCTGTGCCTTCTTCATCTGTTAGGGAGTTGGAGGGTTTGTGTGATATGACCTAAAATAAGACTATGTTTTGTGCTTTGTGCCTTTTTGCAGGCGTATCATTAGGACATTACTGGGACATGAGGAATGCTAGGACTGCCACGTGAGCAATGGGACAaattcaagtgtgtgtgtttgagtatgtgttgaagggatacttcgggattgtGGCagcgaggccctttatctacttccccagagtcagataaacTCCTGGATTCcagttttatgtctctgtgtcccttTATCTaattccccagagtcagatgaactcccGGATACCAGTTGTATGTCTCCTTGTCCAGgttgaaggaagttagaggtagtttcacgagccaacgtttccagtcattgcactagcGCTAGTTAGCATTTGCGCTAGCGCTAGTTAGCATTTGCGCTAGCGCTAGTTAGCATTTGCGCTAGCGCTAGTTGGCAACTTCTTTCAAACAGCACACAgataacattaaaaaaaatggtatccacgagtatCATCTGACTTtggggaaggagagaaaaaaaaaagggcttcattgccaaaatcccataGCATCCCTTTTAGGTGTATGTGTTACTGTGTGAACCTCTGTTATAGGTTAAGACTCTCGTGCTTCCCTCTCTCCTACACCGCGTCCCCAGTTGGTCTCGGCcctatgttggtgttttggcCCCAGTCCAGTGTGGACGGACGGTACCGGGGGGCAGCGTTCTAGTTGTGTTCTGCCAGGACGTCGCTGAACACGTTCAGGAACATGTGAACATGGTGCTCTTTAAACACCAGAGCAGGGCGGAACCGGATGGACCGATCTCCACAGCCACC
>TU1291428
TTCATTAAAATGTGATTCTGGTTTTTATTTTAGGATACATAAAGAGGATGCTTCATAGACAACAATAATTAAGAGATCTGCAATTAACCTTTAACCTCACGgaacaatgtaaacaaacatAGCAATGCTTCTACTGTTGTTAAGGGTTAACAGGAAATCAGCTCTCTATGCAATACTGATTGGGCTGGTTAACAAGACAGgtatcatcgtcatcatcatcactgtcatcatcatcatcatcactgtcatcatcaccactgtcatcgtcatcatcatcatcactgtcatcgtcatcatcatcatcactgtcatcatcatcactgtcatcatcaccactgtcatcatcatcctcatcactgtcatcatcaccactgtcatcatcatcactgtcatcatcatcatcatcatcatggccATATTATAAAGCTTCTACAGTGCGGATGCTGAAGCCGTCTCCTTGGTGCTACTGCTGCTATTTCAACCTGTccacaacatttaaaaaaaacaaacaacaggCATTCAGAACAACGTTGACACCTTGTGCTGTACATCAACAATGAGTCCAGTCGTTTCACGAGGAAACCCGATGAATATGGCAAGATGCACTCTAATACGACTACGTCCCAAACAAGTCAACaaatataatacatatttttATATTAGCGGTCCTGACTGCAAAAAAACCTGCCTCCAATTTAAACATGGGTATATCTGTAGGTAAGTATGGTTGTGTGTTAATGGTTAATTAAAATAGACTGTTAGCCCTGACGTACAGTGAGTCTGGAACCCAGTTCTCCATTCCTTCAACCCCAAAGGAAGTTCAGGAACAACAACATGCAGACACACTACATCATCTAATATAATATTCTCCCTTCACAAAATCCCAAATGTCTGACTTGGATTTATCTCAACCCCAAAAATGAAAGATAATTGTTCTGTTTAAAAAAGAGCTAGGACACTCAGAGGACCCACAGAACCCAAACTAGGACATCATCTCAAGGGTCAGGGGTTAAGAATCGGCGTGCGGCGGCCATTTTGTATCATTACAACCTGGTTTAGGTTAGCTTGCTGATAACCACTCCTGTTAGGTGTGTTTGTTTTCGAAATATCTCGCTGTGCCTTCTTCATCTGTTAGGGAGTTGGAGGGTTTGTGTGATATGACCTAAAATAAGACTATGTTTTGTGCTTTGTGCCTTTTTGCAGGCGTATCATTAGGACATTACTGGGACATGAGGAATGCTAGGACTGCCACGTGAGCAATGGGACAaattcaagtgtgtgtgtttgagtatgtgttgaagggatacttcgggattgtGGCagcgaggccctttatctacttccccagagtcagataaacTCCTGGATTCcagttttatgtctctgtgtcccttTATCTaattccccagagtcagatgaactcccGGATACCAGTTGTATGTCTCCTTGTCCAGgttgaaggaagttagaggtagtttcacgagccaacgtttccagtcattgcactagcGCTAGTTAGCATTTGCGCTAGCGCTAGTTAGCATTTGCGCTAGCGCTAGTTGGCAACTTCTTTCAAACAGCACACAgataacattaaaaaaaatggtatccacgagtatCATCTGACTTtggggaaggagagaaaaaaaaaagggcttcattgccaaaatcccataGCATCCCTTTTAGGTGTATGTGTTACTGTGTGAACCTCTGTTATAGGTTAAGACTCTCGTGCTTCCCTCTCTCCTACACCGCGTCCCCAGTTGGTCTCGGCcctatgttggtgttttggcCCCAGTCCAGTGTGGACGGACGGTACCGGGGGGCAGCGTTCTAGTTGTGTTCTGCCAGGACGTCGCTGAACACGTTCAGGAACATGTGAACATGGTGCTCTTTAAACACCAGAGCAGGGCGGAACCGGATGGACCGATCTCCACAGCCACC

Function

NR:

description
4-aminobutyrate aminotransferase, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1291426 False 1855 lncRNA 0.43 2 100420957 100423066
TU1291427 False 1864 lncRNA 0.43 2 100420957 100423066
TU1291428 True 1947 TUCP 0.43 4 100420957 100423066

Neighbor

gene id symbol gene type direction distance location
LOC118937853 tmem114 coding downstream 125366 100258230 ~ 100295591 (-)
LOC110539073 LOC106606306 coding downstream 435052 99969674 ~ 99985905 (-)
LOC118937866 NA coding downstream 452494 99966423 ~ 99968463 (-)
LOC110539071 LOC106602020 coding downstream 455710 99946736 ~ 99965247 (-)
LOC110538873 NA coding downstream 563701 99850156 ~ 99857256 (-)
carhsp1 LOC106592621 coding upstream 11185 100434251 ~ 100462726 (-)
nat15 natu coding upstream 50488 100473554 ~ 100499497 (-)
LOC118937869 NA coding upstream 67589 100490607 ~ 100491915 (-)
eci1 LOC106596253 coding upstream 107118 100530184 ~ 100543453 (-)
c12h16orf72 LOC106606270 coding upstream 126121 100549187 ~ 100558850 (-)
G1134151 NA non-coding downstream 41203 100379151 ~ 100379754 (-)
G1134147 NA non-coding downstream 51253 100365687 ~ 100369704 (-)
G1134148 NA non-coding downstream 53537 100366366 ~ 100367420 (-)
G1134142 NA non-coding downstream 60965 100359470 ~ 100359992 (-)
G1134139 NA non-coding downstream 67255 100353495 ~ 100353702 (-)
G1134165 NA non-coding upstream 18329 100441395 ~ 100441822 (-)
G1134116 NA non-coding upstream 44426 100467492 ~ 100470548 (-)
G1134115 NA non-coding upstream 47572 100470638 ~ 100472124 (-)
G1134179 NA non-coding upstream 73527 100496593 ~ 100496906 (-)
G1134054 NA other downstream 209809 100210457 ~ 100211148 (-)
G1133028 NA other downstream 495831 99924060 ~ 99925126 (-)
G1132625 NA other downstream 1094033 99326512 ~ 99326924 (-)
LOC110538845 LOC106606260 other downstream 1238042 99178086 ~ 99183106 (-)
G1134183 NA other upstream 80539 100503605 ~ 100504088 (-)
LOC118937858 LOC106591175 other upstream 205377 100628440 ~ 100651699 (-)
LOC118937873 LOC106603827 other upstream 394206 100816544 ~ 100821913 (-)
G1134316 LOC106603753 other upstream 404110 100827176 ~ 100828092 (-)

Expression


Co-expression Network