XLOC_030128 (ogfod2)


Basic Information

Item Value
gene id XLOC_030128
gene name ogfod2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 28041967 ~ 28047353 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058915
AACAGATTGACAGTTCAACCATTCTGGTCATAATgtgttttcattgcctttaaaatattttaaaaacacaaatcataCATATTAAGTCTGTATAAATGTATAACAGTGTGTTATTTGACTTATAATATACGCCATGGAGAGATTTTACACATGCAGTTGCTTTTTCACAGACAATATTTTTCTTGAAGAATACAAACTTCATGTTCGTTTCGTCTCAGAGAACCAGTTTAGGAAGGACTATCAAAATATCCTCAGATCCCTGGGTTGTGAGTCTGAATCCCAATTCAGAGACGTGATCGGAAAGATTCAGGCAGAAATCGAAAGACGCCAAAATCATAAATTGAAATCTACAGAGAGAGCAGCTGTCATCAAGGAGATTTATACACCTCTACACCAACATGTTTATCATCTTCAGGAATCTTTCTTAGCCCCAGAGCTTTTAGAGATGGTCAAATATTGTGCTTCAAGTGAAGCAAATGTGCAAGGACTGTTGAAACTCATCCAGACAGAGGCAGCTTCGAGAGTGTTTCGGTTCCAGGTGTTCCGAAAGGAATTCTGCAAGGACCTTCTAGAAGAGCTGGAGCATTTTGAACAGTCGGATGCACCCAAGGGCAGGCCGAACACCATGAACAATTATGGGATTGTTCTGAATGAGCTGGGCTTTGATGAGGGCTTCATCACTCCACTGAGGGAGGTGTATCTGCGTCCACTCACTGCTCTGCTCTACAgtgactgtggaggaaactgtcTGGACAGTCACAAGGCTTTCGTGGTCAAGTACGATATGCATGAAGACTTGAATCTGAGCTATCATTACGACAATTCTGAAGTCACTCTCAATGTATCACTTGGTAAAGACTTCACCGAGGGGAACCTGTTCTTCGGAGACATGAGACAGGTGCCTCTAAGTGAGACTGAGTGTGTGGAAGTGGAGCATCGCGTTACTGAAGGTCTGCTTCACAGAGGCCAGCACATGCATGGAGCTTTGTCCATCTCCTCAGGTACTCGCTGGAACCTGATTATATGGATGCGAGCTTCACGCCAGAGGAATAAACTCTGCCCAATGTGTGGTAAGAGACCCACTCTTGTGGAGAGTGACGGATTCAGTGACGGTTTCACCATGGACTCCGACGGTGATGCTAGAGCCAATGTGTCATGTTCTTTAACATGA
>TCONS_00058916
ACCATTCTGGTCATAATgtgttttcattgcctttaaaatattttaaaaacacaaatcataCATATTAAGTCTGTATAAATGTATAACAGTGTGTTATTTGACTTATAATATACGCCATGGAGAGATTTTACACATGCAGTTGCTTTTTCACAGACAATATTTTTCTTGAAGAATACAAACTTCATGTTCGTTTCGTCTCAGAGAACCAGTTTAGGAAGGACTATCAAAATGTAAGTAATTTACAGCAAGACGGGCTCATGTCTTCATGTTAAACAGTTTGCCAATTCCGTCTGAACTTCGCTGACATTTGCTTAAGATCCTCAGATCCCTGGGTTGTGAGTCTGAATCCCAATTCAGAGACGTGATCGGAAAGATTCAGGCAGAAATCGAAAGACGCCAAAATCATAAATTGAAATCTACAGAGAGAGCAGCTGTCATCAAGGAGA

Function

symbol description
ogfod2 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity; L-ascorbic acid binding activity; and iron ion binding activity. Orthologous to human OGFOD2 (2-oxoglutarate and iron dependent oxygenase domain containing 2).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-54 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity; L-ascorbic acid binding activity; and iron ion binding activity. Orthologous to human OGFOD2 (2-oxoglutarate and iron dependent oxygenase domain containing 2).

Ensembl:

ensembl_id ENSDARG00000056211

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058915 False 1171 mRNA 0.44 7 28041967 28047353
TCONS_00058916 True 446 processed_transcript 0.36 2 28041984 28042519

Neighbor

gene id symbol gene type direction distance location
XLOC_030127 adam28 coding upstream 121261 27897504 ~ 27920706 (+)
XLOC_030125 zmat4a coding upstream 298137 27583117 ~ 27743830 (+)
XLOC_030126 NA coding upstream 387249 27654250 ~ 27654718 (+)
XLOC_030124 loxl2b coding upstream 503222 27434601 ~ 27538745 (+)
XLOC_030123 histh1l coding upstream 607616 27432958 ~ 27434351 (+)
XLOC_030129 tacr1a coding downstream 113150 28160503 ~ 28213627 (+)
XLOC_030130 ncaph coding downstream 212302 28259655 ~ 28270945 (+)
XLOC_030131 vamp8 coding downstream 224059 28271412 ~ 28279364 (+)
XLOC_030132 NA coding downstream 234816 28282169 ~ 28292411 (+)
XLOC_030133 vamp5 coding downstream 249897 28297250 ~ 28307470 (+)
XLOC_030118 NA non-coding upstream 950663 27076003 ~ 27091304 (+)
XLOC_030117 NA non-coding upstream 990508 26949711 ~ 27051459 (+)
XLOC_030114 NA non-coding upstream 1135181 26896034 ~ 26906786 (+)
XLOC_030106 NA non-coding upstream 1560666 26479674 ~ 26481301 (+)
XLOC_030135 NA non-coding downstream 345995 28393348 ~ 28491518 (+)
XLOC_030136 NA non-coding downstream 450581 28497934 ~ 28503177 (+)
XLOC_030137 NA non-coding downstream 513650 28561003 ~ 28562137 (+)
XLOC_030140 zgc:174260 non-coding downstream 765100 28812453 ~ 28818613 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018782 arl6ip4 coding CM030135.1 CM030135.1 20477126 ~ 20484929 (+)