XLOC_030130 (ncaph)


Basic Information

Item Value
gene id XLOC_030130
gene name ncaph
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 28259655 ~ 28270945 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058919
TTCGGCGCTAAATTTCAAATGGTCTTCTGAAGAGAAGGAAAAAGAAAGTCTGGAGTCTCTGGATTCATTTAAACAGCTTAAAAATCATCAGTTCGTCGCAGTTTCGTTATGAGCGCATTTAGTACCCCGACCGCCCGGCAACGGCAGTGGTCCTCTCCGGCACTGGGCCACAAAGCCGCACTGTCCACCACCAGCACACCTCTGCTGGACAACATTCAGGGAAACGACGATGAGCAGGAGAGACGTCAAAGACGCAGGTCCAGAGTCATCGACCTTCACGGAGTGAACGACTCGTCCATTAATGAGGCCGGTACCCACAGCTCTGCAGGAACACCTGCTGCTGTCCCTAAGCTGTCCTCAGCACAGATATCTGAACATTATTCAACCTGCATCAAGCTTTCCACTGAAAACAAAATTACCACAAAGAATGCATTTGGTCTGCATCTCATCGATTACATGGCAGACATTCTCAAGGAGAAAGACTCTGAGCTAAACTTCAAGGTTGCAGCAGGCACTCTGGATGCCAGCACGAAAATCTATGCGGTGAGGGTGGATGCTGTCCATGCTGATGCTTACAGAGTCCTGGGAGGTTTGGGTTCGGAGACCAAACCAAAAGAAAGTCAGGATGGTGATGATGAgactgaggcagccgagggctcTCAGGGAGAGCAGGTGGCTGCAAAACAGACTAAGAAAAGACCTCCGAAGAAGACAGTGGAGCAGAATCTCAGTAATATCAATCTCTCTGAATCTGAGATGAAGTGTGAGGTTGATCCCATGTTTCAGCGTATGGCTGCTTCCTTTGATGAGAACAGTACAGCGGGAGTCTTTCTctctgtgctgttcagtgaggaCAGTTGCTGTGAGCTGCGCTTTCCTTCACATATGACCTTACTGAAGTCACAGCTTCCTCCTGTGCAGGTGTCCCATCAGAATGTTCCTGCATCACCGTTTACAGGTCACTTAAAGACACTAGAAGACAGGCCAATTTGTCCATCCTTAGAGGATTTCTCTTTTACTAGATGGACTCCTGAGCAGACCACAAACCTCAACCAACTGCTTGAAAAGATGAAGCAGGGAGAGCATGCATTCGATGTCAATGCAGATATTGAGCCAGATGAGGATGATGCGCCAGACTTCGGGGATAATTTTGATGCAGACGTGGATGAGGGCAGACCGGGAGACAATGAGGAGTTTAAGGAACACAAAGAAGCTTGTTCAAAGAGCCCACAGAACGGACGgGGGGTTATTCCTATCGGTGAGGTTGATATTGCCACCATGTGTCTGCAGCTGTCTGATCAGCCCAGAGAATACTCATACTTCAGTCCAAGGACCATGGCCACCTGGGTCGGGCCTGGATACTGGCTTTTCAAACCTGGACATAAGCAGGATCAAAAACCAGACAAAGAACCTCGAAAGCGAGCGCCAAAGAATCCTCTCATCATTGACTTTAAAGCAGATATCAACTTTCATAATTACTTTAAGACAACTAGAGCAGCAACCACTATTAGTAAATCAGCTTTGAACACCAGCAATAAGAAAACCACACTTCCGGCAGACTTCCAGTATCCACCCAGTAACCTGTCGCAGCTCAACCTCAAACCCTCCAACACACTTAGTGCAGAAGGAAAGAAGAGGTTATCAGGAGAGCTGAGTGAGGACATAGGAGAGTACAACTACAACAATGCCAACGATACAGCTAACTTCTGTCCTGGTCTTCAGGAAGGGGACAGTGAGGATGCTGAAGGCTTTGCAGGATCCGATGACTCCCAAACAGACAGACCGACCCCTTTCTCTCTGGACACAGATGACATCTCTACTTATGGAGAGGACTGTCTTGTCCCTGAGCCACACAAGCTAAACATAATTGAGATCAACTATGCCAGGACAGCCAAGAAGATGGACATGAAGAAGCTAAAAACGACTATGTGGGGTCTCCTGACAGAAAGCCCTGAAAAAACAGCTAAGCAGGTGGAGAGTGAAGACACCACAGAAGTACCTGGTGAAAAATCGTTCAGCCAGTCTATCAGGAATCTTGTACAAAGgcttCCCTCTGCCATGGCTACTAATCTGTCAGTACCCTTGGCTTTCGTGGCCCTTCTGCACTTGGCTAATGAGAAAAACTTGGAGCTGCACAAAATTGATGGCATGACTGATATCATCATTAAACAAGGCCACTGAAAATCTGACACAAATCTTTTATGCACAAATTGTCATTTGTATCAAAATGTAAATCCGCTTTCTTTTGTTCTCCATGGcatgtaaaaatacaaatgtcGGGACAAAACAGTATAGccaagaggaggaggaggaggaggaggatgatgacGGTGGTGTCAGGATTATGATAATGTTGTACAGGGAAATACCAAACCACAGActtttttattgatatatatatatatatacacacacacaagtgaaagtgaaagatgtCAGAAGCATTCACCAAGAGGAAAAAACTCAACATGGTGCAGTTTGAATAATGTTTGCTTTTAAAATCAAGCGTTTTGATAACTTTAGCAGCTtcagtaaaaagtaaaaatattaatgtgCTGTTTTCAGTGTCActgtttttttattgcattatttaaattgtaaaacataATTTCTTAACTTTGAGGTTTCTTTTAGATGTGTATTGTACATaccattttcaaaaataaaacgtGTTGTCACATTTA
>TCONS_00058920
TTCGTTATGAGCGCATTTAGTACCCCGACCGCCCGGCAACGGCAGTGGTCCTCTCCGGCACTGGGCCACAAAGCCGCACTGTCCACCACCAGCACACCTCTGCTGGACAACATTCAGGGAAACGACGATGAGCAGGAGAGACGTCAAAGACGCAGGTCCAGAGTCATCGACCTTCACGGAGTGAACGACTCGTCCATTAATGAGGCCGGTACCCACAGCTCTGCAGGAACACCTGCTGCTGTCCCTAAGCTGTCCTCAGCACAGATATCTGAACATTATTCAACCTGCATCAAGCTTTCCACTGAAAACAAAATTACCACAAAGAATGCATTTGGTCTGCATCTCATCGATTACATGGCAGACATTCTCAAGGAGAAAGACTCTGAGCTAAACTTCAAGGTTGCAGCAGGCACTCTGGATGCCAGCACGAAAATCTATGCGGTGAGGGTGGATGCTGTCCATGCTGATGCTTACAGAGTCCTGGGAGGTTTGGGTTCGGAGACCAAACCAAAAGAAAGTCAGGATGGTGATGATGAgactgaggcagccgagggctcTCAGGGAGAGCAGGTGGCTGCAAAACAGACTAAGAAAAGACCTCCGAAGAAGACAGTGGAGCAGAATCTCAGTAATATCAATCTCTCTGAATCTGAGATGAAGTGTGAGGTTGATCCCATGTTTCAGCGTATGGCTGCTTCCTTTGATGAGAACAGTACAGCGGGAGTCTTTCTctctgtgctgttcagtgaggaCAGTTGCTGTGAGCTGCGCTTTCCTTCACATATGACCTTACTGAAGTCACAGCTTCCTCCTGTGCAGGTGTCCCATCAGAATGTTCCTGCATCACCGTTTACAGGTCACTTAAAGACACTAGAAGACAGGCCAATTTGTCCATCCTTAGAGGATTTCTCTTTTACTAGATGGACTCCTGAGCAGACCACAAACCTCAACCAACTGCTTGAAAAGATGAAGCAGGGAGAGCATGCATTCGATGTCAATGCAGATATTGAGCCAGATGAGGATGATGCGCCAGACTTCGGGGATAATTTTGATGCAGACGTGGATGAGGGCAGACCGGGAGACAATGAGGAGTTTAAGGAACACAAAGAAGCTTGTTCAAAGAGCCCACAGAACGGACGgGGGGTTATTCCTATCGGTGAGGTTGATATTGCCACCATGTGTCTGCAGCTGTCTGATCAGCCCAGAGAATACTCATACTTCAGTCCAAGGACCATGGCCACCTGGGTCGGGCCTGGATACTGGCTTTTCAAACCTGGACATAAGCAGGATCAAAAACCAGACAAAGAACCTCGAAAGCGAGCGCCAAAGAATCCTCTCATCATTGACTTTAAAGCAGATATCAACTTTCATAATTACTTTAAGACAACTAGAGCAGCAACCACTATTAGTAAATCAGCTTTGAACACCAGCAATAAGAAAACCACACTTCCGGCAGACTTCCAGTATCCACCCAGTAACCTGTCGCAGCTCAACCTCAAACCCTCCAACACACTTAGTGCAGAAGGAAAGAAGAGGTTATCAGGAGAGCTGAGTGAGGACATAGGAGAGTACAACTACAACAATGCCAACGATACAGCTAACTTCTGTCCTGGTCTTCAGGAAGGGGACAGTGAGGATGCTGAAGGCTTTGCAGGATCCGATGACTCCCAAACAGACAGACCGACCCCTTTCTCTCTGGACACAGATGACATCTCTACTTATGGAGAGGACTGTCTTGTCCCTGAGCCACACAAGCTAAACATAATTGAGATCAACTATGCCAGGACAGCCAAGAAGATGGACATGAAGAAGCTAAAAACGACTATGTGGGGTCTCCTGACAGAAAGCCCTGAAAAAACAGCTAAGCAGGTGGAGAGTGAAGACACCACAGAAGTACCTGGTGAAAAATCGTTCAGCCAGTCTATCAGGAATCTTGTACAAAGgcttCCCTCTGCCATGGCTACTAATCTGTCAGTACCCTTGGCTTTCGTGGCCCTTCTGCACTTGGCTAATGAGAAAAACTTGGAGCTGCACAAAATTGATGGCATGACTGATATCATCATTAAACAAGGCCACTGA

Function

symbol description
ncaph Predicted to enable chromatin binding activity. Acts upstream of or within mitotic sister chromatid segregation. Predicted to be located in chromosome and cytoplasm. Predicted to be part of condensin complex. Is expressed in brain; ciliary marginal zone; optic cup; and spinal cord. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NCAPH (non-SMC condensin I complex subunit H).

GO:

id name namespace
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0007049 cell cycle biological_process
GO:0030261 chromosome condensation biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:0051301 cell division biological_process
GO:0000796 condensin complex cellular_component
GO:0003682 chromatin binding molecular_function
GO:0044547 DNA topoisomerase binding molecular_function
GO:0072587 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-652 Predicted to enable chromatin binding activity. Acts upstream of or within mitotic sister chromatid segregation. Predicted to be located in chromosome and cytoplasm. Predicted to be part of condensin complex. Is expressed in brain; ciliary marginal zone; optic cup; and spinal cord. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NCAPH (non-SMC condensin I complex subunit H).

Ensembl:

ensembl_id ENSDARG00000061468

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058919 False 2684 mRNA 0.45 18 28259655 28270945
TCONS_00058920 True 2079 mRNA 0.48 17 28260158 28270442

Neighbor

gene id symbol gene type direction distance location
XLOC_030129 tacr1a coding upstream 46028 28160503 ~ 28213627 (+)
XLOC_030128 ogfod2 coding upstream 212302 28041967 ~ 28047353 (+)
XLOC_030127 adam28 coding upstream 338949 27897504 ~ 27920706 (+)
XLOC_030125 zmat4a coding upstream 515825 27583117 ~ 27743830 (+)
XLOC_030126 NA coding upstream 604937 27654250 ~ 27654718 (+)
XLOC_030131 vamp8 coding downstream 467 28271412 ~ 28279364 (+)
XLOC_030132 NA coding downstream 11224 28282169 ~ 28292411 (+)
XLOC_030133 vamp5 coding downstream 26305 28297250 ~ 28307470 (+)
XLOC_030134 DNAH10 coding downstream 37829 28308774 ~ 28379335 (+)
XLOC_030135 NA coding downstream 122403 28393348 ~ 28491518 (+)
XLOC_030118 NA non-coding upstream 1168351 27076003 ~ 27091304 (+)
XLOC_030117 NA non-coding upstream 1208196 26949711 ~ 27051459 (+)
XLOC_030114 NA non-coding upstream 1352869 26896034 ~ 26906786 (+)
XLOC_030106 NA non-coding upstream 1778354 26479674 ~ 26481301 (+)
XLOC_030136 NA non-coding downstream 226989 28497934 ~ 28503177 (+)
XLOC_030137 NA non-coding downstream 290058 28561003 ~ 28562137 (+)
XLOC_030140 zgc:174260 non-coding downstream 541508 28812453 ~ 28818613 (+)

Expression


Co-expression Network