XLOC_030132


Basic Information

Item Value
gene id XLOC_030132
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 28282169 ~ 28292411 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061707
tttttgtgtttgtgtttgcatttCCAAAAGTGCTAAAAGTTGTATTTTCATGTTAGGATTATCCGGCTGGGCAAAACGTGTgagtgtaatgaactgtgtttgaacaccaggcttattatttgcaatcttcaaaAAGCGTATGGCgatcgagggaaccagttttatgctagcagccgattagcctacaaggtgacgtcGTCAATTTGGAGGGCGGGTGTAGTGACGTCAGCGCGCATGGGCGGGACAGGCTGTGGATTCTGGTATAAATACGCACGTCAGCCATTTCCCCAGTTTGCCAGATCGCTAGTTTCTTAAACTTTTCGTCAgtaatgtcaaacaaacaaactgtccAAACACTCGATGGGATTCACGCCATTTACCGCCAAAAAGCCTTTTGGCCTGAATTCACATCCACAAAATCACACCAGGATGAAACCCATCtgtaaagcagctttaaaaagGTATGTTATATTCGTTTGTGTTATTAATCAACGTAAGTTAGCGGTGATGCTAACCTGCAGCCCGGTTTGAATTGAGCAAAGTTTTGTTTGTGAAAAAATTATAGCTTTGCATTTGAATTGAATTGTGCTTAATGTTTAACGTTAGCCTAAACGAAAAGCTGTTATACTAGAGCTTACTTTGTTTTAAAGAGCTTGTTTGATACACTCAGTCGTTTTTATCGTCGTCAGTGATGGTGGAGTGATTGttgaattaaacatttatttatttgtaaagttAAATGTGGATGTGCCGCGTTTTTAATACACTAGATtcagtgtttgtttgttagtgtttGTGGTGGTTTTTATGAGAGTAGGCTTCAGTTTGTTGTGCAGGATGAGATGTTGAATTGAGGTTTTATATTCGCGTATTTATTCAATTATGACTAACGTAACTAAGTATGTTCCGTAAAGATTTACCTTttacgttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattaaatgtgtgtgtgatctATGTGTCTCACTCTTATTCCTGGTCACAGTAGAGACTCCTAccaaatctgaaaaaaatctgtaaGTTTGGTACGTCCACCTTAACGCGCTTGAAAATGAACAGTGTCGCTTAGGAGAggagacatttatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagatatagatatagatagatatagatatatatatatagatgtgtgtgtttgtgtgtgtatatatatatatttatatatttatatatatatatatatatatatatatatatatatatatatgtgtgtgcatttgaatttaatttatgcaTGACACAGTACTACAGTGTCATTTTGATGAATATCATATCGCTAATTGTTTATTAAAGgatcttttgttgaataaatgctttgaaattgGGATGTCCTGAGAGAGACTGCAAACCCTATTTGGCCGTCGTCTTTGTGCATTGATGATGTTCATATTCATAAAAGATCAGTTAAGTTAGCGTTAACGTgcattaatttaatgttttaatatttttaaatggtcACGCTGTAATAAAATGAGCATGCTCTAAAGCTTAAATGATTGTAAGGTTCTTTCATTACATTccataaaatatatgaacatttaACATTAACTTCAAGTTAAACCGTAATAGTATATTCTGACATGAGTTTTTAATAGGACTTCAAGCAATGACCATTTTTGCCATTGAATTAATGCCATTCGCCCTGTATGGAACCGTATCATCTTTTCCATAAGGTGGTACTTTTCCCCTGTTTTCTAAAAAACTACTGGTCTAAAAGACATCAATCACAATTTAGATTGTACAATGGGTATTCACCCAGAGAATGGTCACGCAAGCATGTTTATCTGGCTTTTAATGATAGAGGAGTGGTTTGAGAGTAGTGGTAGTTAGTCTTAAAATGGGACTTTGCCATTGCTTACCGCTAcattgaatattcggtctgaataCGCCTGTGTTACTTCAAAACAGCACTATTTTTAATTGACTATAAACCATGTTGCACTTAGTTATTGACTGATAATGTGATTTCACTATTTGTATTTTGCAagcagaaagtctgaatgtgcaaaattaaaacaaactttttccCAATTGATATGATGTTGCCGGTCACCTTGATGAATTTTTCCAGATTCCTCCTGATTTTTCCAGGCTGTTGTTAGTAACTGTGGAGTTAGTAACTGTGGAACTGTGTAGCATAAATAGCTTATGGTCTGAAGGCTTATGTAGTAGAATATAGGCTTAAACTTTGtgctgttgaggatgttttcatccactctttaGTGGTTTATAGGATTTTTTGGCCACAAATTCTTCTGTTTCACAGcaaatgcaatgtttttttagtgacagcttattttgacacatatttgagGAAAATGCTTTGGAATATTTTAGAAACTCAACAATATATTCTGGGCTACCCTCTCAGTATGTCggtgtttttgccctattgacttccattataacagggttttttgattgtaaagccatgacaccatatactCGTGCATTTTTGATAAGTGGTGTTTTTTTAGGTGATCTTTactattttctttttggttttgtCATATTTATTAATGCTCAATTTTTAAGTCTTCATTTATtgatatacttcagtttttatatattttatttgtcgtGCCTTTCAtagctttatatattttatttagctttttctcATTTGTATTAGATTTGTTAGGTTTCATTTTTTGTTGTACGTCAGATTCAACTTGTTTGCTTAAATACTGTTGcagtttttggattttttttttccacagttaaGATTCAAAACATCTTTCAAAGAATTGTGGTTGTTCTTTCTGCGTAAACACTCAAAGCGAGAATCTTTAGAAATGGTAAATTAATAGGTAGGCATGCACAGTATGGCTGTTTATATGCAATTctatgtggagttttcatgttctccccgtgttggtgtgggtttcctccagagtgctccggttcccccacagtccaaacacgtgcgctataggatgaattgaataaactaaattgatcattgtgtgtgtggatgattgttTCCCAAATAGAGGTAAagtagttggttttatattagcacattCTGACCTCTGCGTTCAATAAGTTTGTTAATCTGCAAGTAAAGAATCCAAATTCAAATATTTACCGTTGTAGTCAATTATGAGCCAAATGTCCACcacacttttttttgtcaaactcgGCGTTTTAAAGGAGTATAAAAACACCTTCACCTCTATGAAGGTGATGTCATCGCTTTTTTGAGGGACCGCCTACAAACTATCAGTTTGTAAAATCAAGCTGCTAACGTTCACTGTCCATAGTAAGCCTATACTACTTAATCTTAATAAAATCATCTGCAAACAATACATCACAGACATGTTtatgtatacattatattataacaatttaaaaacaaaatttatcaACATATAGAATTAGTAATTTAGAATAATACATTAGTATAGAATAGTAATTTTATATACTGATTATTGTGTTATGATTGATGTATACACTTTACACAAGTATACATGTTCATGtgtaatatgaataattaaatgtgttttttttttcttactcttCTTCTTTCCTCATTATTTACAGATTGTACGCAAGCAAAAGATGGCCAGATTGAGACTTGTGAACTTCACCACTGGGTCCCTCCTTTAAAATGTTACTCTGCTAAAGTACATgtgaataaagaaataatttcAAGACGACATAACAGTGTCAAGGAATGAGTGCTGCTCACGTGGGAGAAAAGAGTCCAAAATGAGAATCTATTCATTTGGGTATTCACAATACTATTGTtcacttttaaatatatatatatattttttttttttttgcacaatatttTTATACGTAATTGCTACATATAACATAGTAATGTAATAAGTTGTACTTTCCTTACAGATTCAGTGAGATTCTTGCCAATGTATGTTTCATGTCCCATGTGTCAATATAGATCTGCAATCAGAAGACCAGCTGAccttttgtgatttgtgtttggTATCAATGAAATTACATGATAATGTGATCAAATAGGAGATGTAATGCATTTATTCTATTCTATAATTATCATTGAGtatgaaatgtgctttttaaataaacttgccttgaaATTGGCAGTATTGATGAACATTATTATTGCTGATGGCCGATTTTAATTTGAAACTCCTATAATGATtttgaaacaaaatattaataaattttacatttaaacggaaaaaaaaactagaaaatatgctttaaaagttCATCATAATTGTTGTGCatattagtaaaataattttgtaattttatataatttatatagtttaataattttggttaaactaatatattttacagtactgttttACACCTGTAAATGTATTGAAGGTTGATTATAGGCAAACTTAAACAAAACgagaaaaatattgaaataaaaattatCAGTAAAACAATTGATGTGAGTACACCACAACATATAGATTGATGTGAGGAAATTTGGTTAAAATACGATGTATAAAGaacataattttatatttttaaataaaaatattaaatgcatgcAGTGGTTGTaagcaaacttaaaaaaaatacaaaataatattaaaagagATATTATTAGTAAAAGAAATGAGTACACTAAAACATGTAGACAAATGCTGGAAAGAATATGctgacaataaaatatttttatttaaaaaaaataaaagacattaatGACTTTGACTTAAGGCTAACATAAAGGcaacaaaaattatataatattcttaaaagaatttaaataagtacaacaaaaaataaagtaatgcttGAAAATCAAtaccaccatcaccaccaccattGAAATCATAAAACCACAGTCTTCATTTTATGTTGTACTCACATCAATTATTTTACTATTGTTCACAACAATTATTATGGTAaacttttaaagcatattttctatagtgtttttttttttttttttttttggaatgtaaatatatattaatatcttGTTTCAAAATCATTGTAGGATTAAGAAATTAAAATcagacatcaataattatatTATCTATCACTCACAGGTAAATTTTTATAACTACATGTTGtaaatgaatttatatttataagcataatttctgtagtgtgCTTTTCATCACAGTGAATTtaaatatcttaatatcttgTTGCCCAATCACTTTAGCATCAACAAATTATTCATAATATCCCCTATCACTCACAAGTAGCCTTATACATGTATATGTTGTAAACAAATGTATATTAATGTTTATAAGAATGTttctacagtatatatttttcatGGTAAAGGTAGATATCTTAATATTTTGTTTCACAATCATTGTAGGATTAACAAATTAATATTAGACATCAGCAATTATattgtctatcactcacaagtagcttttcataaatatatcttgtaattaaatttatattgataattattaGCATATTTTCCACAGCATGTTTTGTCAACACAGATATCGTAATATCTTGTTGTGAATTCATTGTAGGATCAACAAATTAATATCAGAAATCAGTAATAATATCAATTATCACTCAAGTAAGTTTTAAGAAATATATGATGtaaaaattgtaattaatatttatgaCCATAATCGCTGTAGTGTGGGTTTTTCAtgaatgtaaacatcttaatatCTTGTTACACTTTAATGGTAGCGTCAacaaattattatcagacatcagcaataatattatctatcactcaca
>TCONS_00058922
CATTTCCCCAGTTTGCCAGATCGCTAGTTTCTTAAACTTTTCGTCAgtaatgtcaaacaaacaaactgtccAAACACTCGATGGGATTCACGCCATTTACCGCCAAAAAGCCTTTTGGCCTGAATTCACATCCACAAAATCACACCAGGATGAAACCCATCtgtaaagcagctttaaaaagATTGTACGCAAGCAAAAGATGGCCAGATTGAGACTTGTGAACTTCACCACTGGGTCCCTCCTTTAAAATGTTACTCTGCTAAAGTACATgtgaataaagaaataatttcAAGACGACATAACAGTGTCAAGGAATGAGTGCTGCTCACGTGGGAGAAAAGAGTCCAAAATGAGAATCTATTCATTTGGGTATTCACAATACTATTGTtcacttttaaatatatatatatattttttttttttttgcacaatatttTTATACGTAATTGCTACATATAACATAGTAATGTAATAAGTTGTACTTTCCTTACAGATTCAGTGAGATTCTTGCCAATGTATGTTTCATGTCCCATGTGTCAATATAGATCTGCAATCAGAAGACCAGCTGAccttttgtgatttgtgtttggTATCAATGAAATTACATGATAATGTGATCAAATAGGAGATGTAATGCATTTATTCTATTCTATAATTATCATTGAGtatgaaatgtgctttttaaataaacttgccttgaaATTGGCAGTATTGATGAACATTATTATTGCTGATGGCCGATTTTAATTTGAAACTCCTATAATGATtttgaaacaaaatattaataaattttacatttaaacggaaaaaaaaactagaaaatatgctttaaaagttCATCATAATTGTTGTGCatattagtaaaataattttgtaattttatataatttatatagtttaataattttggttaaactaatatattttacagtactgttttACACCTGTAAATGTATTGAAGGTTGATTATAGGCAAACTTAAACAAAACgagaaaaatattgaaataaaaattatCAGTAAAACAATTGATGTGAGTACACCACAACATATAGATTGATGTGAGGAAATTTGGTTAAAATACGATGTATAAAGaacataattttatatttttaaataaaaatattaaatgcatgcAGTGGTTGTaagcaaacttaaaaaaaatacaaaataatattaaaagagATATTATTAGTAAAAGAAATGAGTACACTAAAACATGTAGACAAATGCTGGAAAGAATATGctgacaataaaatatttttatttaaaaaaaataaaagacattaatGACTTTGACTTAAGGCTAACATAAAGGcaacaaaaattatataatattcttaaaagaatttaaataagtacaacaaaaaataaagtaatgcttGAAAATCAAtaccaccatcaccaccaccattGAAATCATAAAACCACAGTCTTCATTTTATGTTGTACTCACATCAATTATTTTACTATTGTTCACAACAATTATTATGGTAaacttttaaagcatattttctatagtgtttttttttttttttttttttggaatgtaaatatatattaatatcttGTTTCAAAATCATTGTAGGATTAAGAAATTAAAATcagacatcaataattatatTATCTATCACTCACAGGTAAATTTTTATAACTACATGTTGtaaatgaatttatatttataagcataatttctgtagtgtgCTTTTCATCACAGTGAATTtaaatatcttaatatcttgTTGCCCAATCACTTTAGCATCAACAAATTATTCATAATATCCCCTATCACTCACAAGTAGCCTTATACATGTATATGTTGTAAACAAATGTATATTAATGTTTATAAGAATGTttctacagtatatatttttcatGGTAAAGGTAGATATCTTAATATTTTGTTTCACAATCATTGTAGGATTAACAAATTAATATTAGACATCAGCAATTATattgtctatcactcacaagtagcttttcataaatatatcttgtaattaaatttatattgataattattaGCATATTTTCCACAGCATGTTTTGTCAACACAGATATCGTAATATCTTGTTGTGAATTCATTGTAGGATCAACAAATTAATATCAGAAATCAGTAATAATATCAATTATCACTCAAGTAAGTTTTAAGAAATATATGATGtaaaaattgtaattaatatttatgaCCATAATCGCTGTAGTGTGGGTTTTTCAtgaatgtaaacatcttaatatCTTGTTACACTTTAATGGTAGCGTCAacaaattattatcagacatcagcaataatattatctatcactcaca
>TCONS_00061708
CATTTCCCCAGTTTGCCAGATCGCTAGTTTCTTAAACTTTTCGTCAgtaatgtcaaacaaacaaactgtccAAACACTCGATGGGATTCACGCCATTTACCGCCAAAAAGCCTTTTGGCCTGAATTCACATCCACAAAATCACACCAGGATGAAACCCATCtgtaaagcagctttaaaaagATTGTACGCAAGCAAAAGATGGCCAGATTGAGACTTGTGAACTTCACCACTGGGTCCCTCCTTTAAAATGTTACTCTGCTAAAGTACATgtgaataaagaaataatttcAAGACGACATAACAGTGTCAAGGAATGAGTGCTGCTCACGTGGGAGAAAAGAGTCCAAAATGAGAATCTATTCATTTGGATATCCCACAGATCAGAGGCGCCTGCAGCCTTAAGGTTGGCACACAGCGGATGAACCGCTCAGCACCGCTACACGgcgtgcacatgacagttgatagtatcaaacaccagacgcgcacattcgcatggtATTTAAGaggaaactaatcagatggcgctctgtggcgcggcagaaatatgaactgtgtcctgagtcgtggctgggcgcaGTTGACTTGGTGCGCCgatgtgtgtaccctgatagaaacctatattTAGAATTGTAAAAAGCATGGCGCTGTGTGGCACAACGGTGTTTTTCAGTGGCCTTCAGCATTGTTGGGTCTGGCATACTGCTTCTTCGTTTTCGCATAGTTTGAAACATTTATCAGAGttttatattgattaaaataaaaaatgagaaatgtcttattt

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048864 stem cell development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0014031 mesenchymal cell development biological_process
GO:0014032 neural crest cell development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061707 False 5790 lncRNA 0.30 1 28282169 28287958
TCONS_00058922 False 2308 lncRNA 0.27 2 28282449 28287958
TCONS_00061708 True 782 lncRNA 0.43 3 28282449 28292411

Neighbor

gene id symbol gene type direction distance location
XLOC_030131 vamp8 coding upstream 2805 28271412 ~ 28279364 (+)
XLOC_030130 ncaph coding upstream 11224 28259655 ~ 28270945 (+)
XLOC_030129 tacr1a coding upstream 68542 28160503 ~ 28213627 (+)
XLOC_030128 ogfod2 coding upstream 234816 28041967 ~ 28047353 (+)
XLOC_030127 adam28 coding upstream 361463 27897504 ~ 27920706 (+)
XLOC_030133 vamp5 coding downstream 4839 28297250 ~ 28307470 (+)
XLOC_030134 DNAH10 coding downstream 16363 28308774 ~ 28379335 (+)
XLOC_030135 NA coding downstream 100937 28393348 ~ 28491518 (+)
XLOC_030136 NA coding downstream 205523 28497934 ~ 28503177 (+)
XLOC_030137 NA coding downstream 268592 28561003 ~ 28562137 (+)
XLOC_030126 NA non-coding upstream 627451 27654250 ~ 27654718 (+)
XLOC_030118 NA non-coding upstream 1190865 27076003 ~ 27091304 (+)
XLOC_030117 NA non-coding upstream 1230710 26949711 ~ 27051459 (+)
XLOC_030114 NA non-coding upstream 1375383 26896034 ~ 26906786 (+)
XLOC_030106 NA non-coding upstream 1800868 26479674 ~ 26481301 (+)
XLOC_030140 zgc:174260 non-coding downstream 520042 28812453 ~ 28818613 (+)
XLOC_030141 CR559930.1 non-coding downstream 532201 28824612 ~ 28826140 (+)

Expression


Co-expression Network