G1134442


Basic Information

Item Value
gene id G1134442
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 101205334 ~ 101217975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1291931
gtctacaacactgtggtccaacaggggatctgactgtctacaacactgtggtccaacacacccatcagggggtctgactgtctacaacactgtggtccatcacatccatcaggggatctgactgtctacaacactgtggtccgacacacccatcaggggatctgactgtctacaacactgtggtccatcaggggatctgactgtctacaacactgtggtccaacaggggatctgactgtctacaacactgtggtccatcaggggatctgactgtctacaacactgtggtccatcaggggatctgactgtctacaacactgtggtccaacacacccatcaggggatctgactgtctacaacactgtggtccaacagggggtctgactgtctacaacactgtggtccaacacacccatcaggggatctgactgtctacaacactgtggtccaacagggggtctgactgtctacaacactgtggtccaacacacccatcagggggtctgactgtctacaacactgtggtccatcaggggatctgactgtctacaacactgtggtccaacaggggatctgactgtctacaacactgtggtccaacaggggatctgactgtctacaacactgtggttcatcacacccatcaggggatatgactgtctacaacactgtggtccaacacacccatcaggggatctgactgtctacaacactgtggtccatcaggggatctgactgtctacaacactgtggtccaacacacccatcaggggatctgactgtctacaacactgtggtccatcagggaatctgactgtctacaacactgtggtccatcaggggatctgactgtctacaacactgtggtccatcaggggatctgactgtctacaacactgtggtccaacacacccatcaggggatctgactgtctacaacactgtggtccaacacacccatcaggggatctgact
>TU1291933
gtggtccaacacacccatcaggggatctgactgtctacaacactgtggtccaacaggggatctgactgtctacaacactgtggtccaacacacccaccagggggtctgactgtctacaacactgtggtccatcacacccatcaggggatctgactgtctacaacactgtggtccaacacacccatcagaggatctgactgtctacaacactgtggtcccaacagggggtctgactgtctacaacactgtggtccaacacacccatcagggggtctgactgtctacaacactgtggtccatcaggggatctgactgtctacaacactgtggtccaacaggggatctgactgtctacaacactgtggtccaacaggggatctgactgtctacaacactgtggttcatcacacccatcaggggatatgactgtctacaacactgtggtccaacacacccatcaggggatctgactgtctacaacactgtggtccatcaggggatctgactgtctacaacactgtggtccaacacacccatcaggggatctgactgtctacaacactgtggtccatcagggaatctgactgtctacaacactgtggtccatcaggggatctgactgtctacaacactgtggtccatcaggggatctgactgtctacaacactgtggtccaacacacccatcaggggatctgactgtctacaacactgtggtccaacacacccatcaggggatctgact
>TU1291934
aTCAGGGGacctgactgtctacaacactgtggtccaacaggggatctgactgtctacaacactgtggtccaacacacccatcagggggtctgactgtctacaacactgtggtccaacacactcatcagaggatctgactgtctacaacactgtggtccaacacacccatcaggggatctgactgtctacaacactgtggtccaacacacccatcaggggatctgactgtctacaacactgtggtcctatacacccatcaggggatctgactgtctacaacactgtggtccaacacactcatcagaggatctgactgtctacaacactgtggtccaacaggggatctgactgtctacaacactgtggtccaacacatccatcaggggatctgactgtctacaacactgtggtccaacacacccatcagaggatctgactgtctacaacactgtggtcccaacacacccatcaggggatttgactgtctacaacactgtggtccaacacatccatcaggggatctgactgtctacaacactgtggtccatcacatccatcaggggatctgactgtctacaacactgtggtccaacacacccatcaggggatctgactgtctacaacactgtggtccaacacacccatcaggggatctgactgtctacaacactgtggtccatcacatccatcaggggatctgactgtctacaacactgtggtccaacacatccatcaggggatctgactgtctacaacactgtggtcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1291931 False 974 lncRNA 0.52 2 101205334 101212333
TU1291933 False 744 lncRNA 0.52 3 101205334 101217975
TU1291934 True 766 lncRNA 0.51 3 101207178 101210633

Neighbor

gene id symbol gene type direction distance location
LOC118937863 LOC106603827 coding downstream 51180 101148360 ~ 101154161 (-)
LOC110518098 LOC106581592 coding downstream 74819 100942033 ~ 101130515 (-)
LOC118937873 LOC106603827 coding downstream 383421 100816544 ~ 100821913 (-)
LOC118937858 LOC106591175 coding downstream 553635 100628440 ~ 100651699 (-)
LOC118937871 NA coding downstream 579608 100623875 ~ 100625726 (-)
LOC118937847 LOC106603827 coding upstream 35611 101253586 ~ 101258211 (-)
LOC118937872 NA coding upstream 53146 101271121 ~ 101282373 (-)
LOC110519569 LOC106603827 coding upstream 162824 101380799 ~ 101474105 (-)
LOC118937846 LOC106592354 coding upstream 277120 101495095 ~ 101509022 (-)
LOC118937854 LOC106603827 coding upstream 464523 101682498 ~ 101684312 (-)
G1134437 NA non-coding downstream 25136 101178921 ~ 101180198 (-)
LOC110511505 LOC106593326 non-coding downstream 33222 101154555 ~ 101271098 (-)
G1134425 NA non-coding downstream 100518 101104361 ~ 101104816 (-)
G1134415 NA non-coding downstream 141149 101043736 ~ 101064185 (-)
G1134388 NA non-coding upstream 31778 101249753 ~ 101250945 (-)
G1134449 NA non-coding upstream 46553 101264528 ~ 101265641 (-)
G1134457 NA non-coding upstream 72300 101290275 ~ 101290910 (-)
G1134463 NA non-coding upstream 84714 101302689 ~ 101306686 (-)
G1134476 NA non-coding upstream 118834 101336809 ~ 101338528 (-)
G1134312 LOC106603827 other downstream 116779 101076062 ~ 101088555 (-)
G1134323 NA other downstream 206818 100993810 ~ 100998516 (-)
G1134339 LOC106603894 other downstream 263427 100940405 ~ 100941907 (-)
G1134316 LOC106603753 other downstream 377242 100827176 ~ 100828092 (-)
G1134288 NA other upstream 228191 101446166 ~ 101451979 (-)
G1134515 NA other upstream 318422 101536397 ~ 101594444 (-)
G1134303 LOC106601187 other upstream 538155 101756130 ~ 101817671 (-)
G1134287 LOC106592354 other upstream 727627 101437772 ~ 101954443 (-)

Expression


Co-expression Network