XLOC_030133 (vamp5)


Basic Information

Item Value
gene id XLOC_030133
gene name vamp5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 28297250 ~ 28307470 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058923
AACTCTGGAGGAGCATTTTTTTGCGCATGAAGTTTGAAGATATCGAGCTTGTACTGTTTTCTCTTATCAGCTGCTAGTGCTCTTTCCGATGCAGTATATTCGGTGACAGTTTCTGGCGCATTTAACCCACAGATTGATACAATGAATGGGAACAGCCGCCTCAGCGAGGCTCAAAAAGATGTGGAGGAAGTTAAAGGTATCATGCTGGATAACCTAAACAAGGCTGAAGAGCGATCAGGAAAACTCAAGGAACTGGAGACCAGGGCTGACGACCTACTTGTAAAGGTAGAACTTTTGTAACACCAACTATTTAAGCACATAAACGAGCTGTCCCATTAACTTATTCTGTGTTCCTGTGAACATGATATACAGCTCTCTGAGGACTTGGAAAACTATAAACTGGGTTTCCGGAATTTCAAGTGTTTTCTAGGCAGAGCAAGGACCTATCGAATTTGAGTCTATTAATAGTGTCTTGGTGGAGTATACGggggaaaaaaaagtgttcaatTTGCATCCTGAGTTTAGTTTACTTTGTTAATTTTAGAAAGCTATTTCCCTTTGTTTTGAGATGAACAAAAACTTGTGTAATAGTATGGCAGGCTGTTTGCACAAGACATGCATTGTGGTTAGGCAACAAGTTCacattgattttcatttttttgtctcATGCGAGCATACTCAAAATTCCATTGGAGtggaaaaataaatgtacaaacaaacaagttaattATCAGCAGTTACACAGCGTTCCAGAAGACCATGAGGCTTTTATTTAGTTCAGTATTGATCCAGTTTGGTTCAATAACGGTCCAAGTTCAAAGATCACAACTGTAGTTTGATTTTCTTGGTTATTTTGTTAGGCTTTCATGACAT
>TCONS_00058924
CTGGAGGAGCATTTTTTTGCGCATGAAGTTTGAAGATATCGAGCTTGTACTGTTTTCTCTTATCAGCTGCTAGTGCTCTTTCCGATGCAGTATATTCGGTGACAGTTTCTGGCGCATTTAACCCACAGATTGATACAATGAATGGGAACAGCCGCCTCAGCGAGGCTCAAAAAGATGTGGAGGAAGTTAAAGGTATCATGCTGGATAACCTAAACAAGGCTGAAGAGCGATCAGGAAAACTCAAGGAACTGGAGACCAGGGCTGACGACCTACTTGTAAAGGGCAAAGCATTCTCAAAGACCGCCACAAAGGTGAAACAGAAGAAGCGCTGGGAAAATATCAAGTATAAAGTGGTTATAGCAGCAGTTGCAGCTGCAGTGCTTCTTGGCATAATCTTGGCTGTGGCATTGAGCTTTAGCAATGATGACAATGGTAAAGACGCATccacgacaacaacaacaaaggccCCATGAAATTACTAGAAGCTAGCAAACAAGATAATGagtcaacacatttttttaaactctaaAGAAAATAAACGTCCTGAAAATCCTTCAGGTTCTTTTGTACTAAAGTATCATAGATCACTCATTGTGATACAGTGCAAGCTAAATCTGTGATGCTATTTGTGGTGGGTGTCATACAAACGGTACCATGGTGTCATAATCATTTCCGCTTTTTCATTTTCAGTGGCAACATATACACATACTTATTATGTGGCAATAATAGTAACATTTTACACAGATTCTTCTTGGACTAAGCATAATTTAACCATACATTAGGTAAATTGGTGTCATGTGTAGATCAAAGTGTACCTGGAAAAACATGTTTTACTGTCAGTGATCTTCAAATTTCTTGATTCTGTTTGTCAGCAGAAAAAATGTGTGTAATGGTGTCAGGTTTTGTTAAGTGTGTGGATTTTTCACTTGTTAGTTACAGAACAAACCCATGTATCTGACATACCCGTTTGACATCTTGGACTCTTACTGATGAGCTGATGAGAATAATtgcatgtatttttaatgcatgtATTTTTGACTTTGGAGAGATACAAAATGTGCACTTTTTGGGGTAATTCAGGATTTGGTTGGCATGTGTATTCTTTGATTTGTGTTATTTTTGTGCTAAAACTTCTATATAGATTAAGAAGTGAATAAttcttaatattttgattttcagCGCTATAACAACCATAGGAGGTTTCCTCCTGTATTCAGATTTGTTAGGGGAGTGTGTAAGAGTTTTGTCACTGTTGAAGATTTGATTATCTTTGTCCATtatcaatataaaatgtatatgtttatatgATTAATAATTTGCTGCTACAAACAGCActatattatttgcatgtgtaCATATAAATAAACGTCCATTGTAAATA
>TCONS_00058925
TTTTGCGCATGAAGTTTGAAGATATCGAGCTTGTACTGTTTTCTCTTATCAGCTGCTAGTGCTCTTTCCGATGCAGTATATTCGGTGACAGTTTCTGGCGCATTTAACCCACAGATTGATACAATGCAGAATGGGAACAGCCGCCTCAGCGAGGCTCAAAAAGATGTGGAGGAAGTTAAAGGTATCATGCTGGATAACCTAAACAAGGCTGAAGAGCGATCAGGAAAACTCAAGGAACTGGAGACCAGGGCTGACGACCTACTTGTAAAGGGCAAAGCATTCTCAAAGACCGCCACAAAGGTGAAACAGAAGAAGCGCTGGGAAAATATCAAGTATAAAGTGGTTATAGCAGCAGTTGCAGCTGCAGTGCTTCTTGGCATAATCTTGGCTGTGGCATTGAGCTTTAGCAATGATGACAATGGTAAAGACGCATccacgacaacaacaacaaaggccCCATGAAATTACTAGAAGCTAGCAAACAAGATAATGagtcaacacatttttttaaactctaaAGAAAATAAACGTCCTGAAAATCCTTCAGGTTCTTTTGTACTAAAGTATCATAGATCACTCATTGTGATACAGTGCAAGCTAAATCTGTGATGCTATTTGTGGTGGGTGTCATACAAACGGTACCATGGTGTCATAATCATTTCCGCTTTTTCATTTTCAGTGGCAACATATACACATACTTATTATGTGGCAATAATAGTAACATTTTACACAGATTCTTCTTGGACTAAGCATAATTTAACCATACATTAGGTAAATTGGTGTCATGTGTAGATCAAAGTGTACCTGGAAAAACATGTTTTACTGTCAGTGATCTTCAAATTTCTTGATTCTGTTTGTCAGCAGAAAAAATGTGTGTAATGGTGTCAGGTTTTGTTAAGTGTGTGGATTTTTCACTTGTTAGTTACAGAACAAACCCATGTATCTGACATACCCGTTTGACATCTTGGACTCTTACTGATGAGCTGATGAGAATAATtgcatgtatttttaatgcatgtATTTTTGACTTTGGAGAGATACAAAATGTGCACTTTTTGGGGTAATTCAGGATTTGGTTGGCATG

Function

symbol description
vamp5 Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Predicted to be involved in SNARE complex assembly. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human VAMP5 (vesicle associated membrane protein 5).

GO:

id name namespace
GO:0035493 SNARE complex assembly biological_process
GO:0006906 vesicle fusion biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0017144 drug metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0071711 basement membrane organization biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005588 collagen type V trimer cellular_component
GO:0005886 plasma membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
ko04130 SNARE interactions in vesicular transport
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-4209 Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Predicted to be involved in SNARE complex assembly. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human VAMP5 (vesicle associated membrane protein 5).

Ensembl:

ensembl_id ENSDARG00000068262

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058923 False 873 lncRNA 0.39 2 28297250 28304975
TCONS_00058924 False 1381 mRNA 0.37 3 28297254 28307470
TCONS_00058925 True 1084 mRNA 0.39 3 28297268 28307184

Neighbor

gene id symbol gene type direction distance location
XLOC_030132 NA coding upstream 4839 28282169 ~ 28292411 (+)
XLOC_030131 vamp8 coding upstream 17886 28271412 ~ 28279364 (+)
XLOC_030130 ncaph coding upstream 26305 28259655 ~ 28270945 (+)
XLOC_030129 tacr1a coding upstream 83623 28160503 ~ 28213627 (+)
XLOC_030128 ogfod2 coding upstream 249897 28041967 ~ 28047353 (+)
XLOC_030134 DNAH10 coding downstream 1304 28308774 ~ 28379335 (+)
XLOC_030135 NA coding downstream 85878 28393348 ~ 28491518 (+)
XLOC_030136 NA coding downstream 190464 28497934 ~ 28503177 (+)
XLOC_030137 NA coding downstream 253533 28561003 ~ 28562137 (+)
XLOC_030138 trafd1 coding downstream 462803 28770273 ~ 28790100 (+)
XLOC_030126 NA non-coding upstream 642532 27654250 ~ 27654718 (+)
XLOC_030118 NA non-coding upstream 1205946 27076003 ~ 27091304 (+)
XLOC_030117 NA non-coding upstream 1245791 26949711 ~ 27051459 (+)
XLOC_030114 NA non-coding upstream 1390464 26896034 ~ 26906786 (+)
XLOC_030140 zgc:174260 non-coding downstream 504983 28812453 ~ 28818613 (+)
XLOC_030141 CR559930.1 non-coding downstream 517142 28824612 ~ 28826140 (+)

Expression


Co-expression Network