Gene
RNA
| Item | Value |
|---|---|
| gene id | G1134287 |
| gene name | LOC106592354 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 101437772 ~ 101954443 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| protein NLRC3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1291672 | False | 690 | lncRNA | 0.50 | 4 | 101437772 | 101440974 |
| TU1291675 | False | 418 | lncRNA | 0.52 | 3 | 101437772 | 101474680 |
| TU1291677 | False | 427 | lncRNA | 0.51 | 3 | 101437772 | 101438967 |
| TU1291669 | True | 518 | TUCP | 0.45 | 5 | 101945602 | 101954443 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118937872 | NA | coding | downstream | 155399 | 101271121 ~ 101282373 (-) |
| LOC110511505 | LOC106593326 | coding | downstream | 166674 | 101154555 ~ 101271098 (-) |
| LOC118937847 | LOC106603827 | coding | downstream | 179561 | 101253586 ~ 101258211 (-) |
| LOC118937863 | LOC106603827 | coding | downstream | 283618 | 101148360 ~ 101154161 (-) |
| LOC110518098 | LOC106581592 | coding | downstream | 307257 | 100942033 ~ 101130515 (-) |
| LOC118937846 | LOC106592354 | coding | upstream | 20415 | 101495095 ~ 101509022 (-) |
| LOC118937854 | LOC106603827 | coding | upstream | 207818 | 101682498 ~ 101684312 (-) |
| LOC110516333 | LOC106603753 | coding | upstream | 288432 | 101763112 ~ 101954471 (-) |
| LOC118937861 | LOC106603827 | coding | upstream | 334205 | 101808885 ~ 101809452 (-) |
| LOC110512533 | LOC106603753 | coding | upstream | 346083 | 101820763 ~ 101852176 (-) |
| G1134497 | NA | non-coding | downstream | 33873 | 101403443 ~ 101403899 (-) |
| G1134361 | LOC106603827 | non-coding | downstream | 45939 | 101390325 ~ 101391833 (-) |
| G1134485 | NA | non-coding | downstream | 47909 | 101357332 ~ 101389863 (-) |
| G1134484 | NA | non-coding | downstream | 48735 | 101356897 ~ 101389037 (-) |
| G1134476 | NA | non-coding | downstream | 99244 | 101336809 ~ 101338528 (-) |
| G1134510 | NA | non-coding | upstream | 41122 | 101515802 ~ 101516783 (-) |
| G1134517 | NA | non-coding | upstream | 70951 | 101545631 ~ 101576354 (-) |
| G1134520 | NA | non-coding | upstream | 73679 | 101548359 ~ 101548849 (-) |
| G1134523 | NA | non-coding | upstream | 84061 | 101558741 ~ 101565001 (-) |
| G1134524 | NA | non-coding | upstream | 84510 | 101559190 ~ 101564165 (-) |
| G1134312 | LOC106603827 | other | downstream | 349217 | 101076062 ~ 101088555 (-) |
| G1134323 | NA | other | downstream | 439256 | 100993810 ~ 100998516 (-) |
| G1134339 | LOC106603894 | other | downstream | 495865 | 100940405 ~ 100941907 (-) |
| G1134316 | LOC106603753 | other | downstream | 609680 | 100827176 ~ 100828092 (-) |
| G1134515 | NA | other | upstream | 61717 | 101536397 ~ 101594444 (-) |
| G1134303 | LOC106601187 | other | upstream | 281450 | 101756130 ~ 101817671 (-) |
| G1134287 | LOC106592354 | other | upstream | 470922 | 101437772 ~ 101954443 (-) |
| G1134612 | NA | other | upstream | 499969 | 101974649 ~ 101976006 (-) |
| LOC110519569 | LOC106603827 | coding | downstream | 471497 | 101380799 ~ 101474105 (-) |
| LOC118937870 | NA | coding | upstream | 73612 | 102028055 ~ 102099442 (-) |
| LOC118937864 | LOC106603827 | coding | upstream | 126485 | 102080928 ~ 102087118 (-) |
| LOC118937612 | LOC106593326 | coding | upstream | 162162 | 102116605 ~ 102232078 (-) |
| LOC118937843 | LOC106601187 | coding | upstream | 287670 | 102236650 ~ 102545195 (-) |
| LOC118937850 | NA | coding | upstream | 474679 | 102429122 ~ 102444659 (-) |
| G1134604 | NA | non-coding | downstream | 15267 | 101929742 ~ 101930335 (-) |
| G1134603 | NA | non-coding | downstream | 16333 | 101927138 ~ 101929269 (-) |
| G1134597 | NA | non-coding | downstream | 62280 | 101882246 ~ 101883322 (-) |
| G1134595 | NA | non-coding | downstream | 65328 | 101879877 ~ 101880274 (-) |
| G1134587 | NA | non-coding | downstream | 97281 | 101847992 ~ 101848321 (-) |
| G1134609 | NA | non-coding | upstream | 5219 | 101959662 ~ 101960158 (-) |
| G1134610 | NA | non-coding | upstream | 18108 | 101972551 ~ 101973162 (-) |
| G1134611 | NA | non-coding | upstream | 18899 | 101973342 ~ 101974163 (-) |
| G1134354 | LOC106603827 | non-coding | upstream | 32005 | 101986448 ~ 101990531 (-) |
| G1134618 | NA | non-coding | upstream | 42308 | 101996751 ~ 102001100 (-) |
| G1134288 | NA | other | downstream | 493623 | 101446166 ~ 101451979 (-) |
| G1134325 | NA | other | upstream | 278595 | 102233038 ~ 102233671 (-) |
| G1134301 | NA | other | upstream | 280646 | 102235089 ~ 102236521 (-) |
| G1134299 | LOC106581592 | other | upstream | 409692 | 102364135 ~ 102366535 (-) |
