XLOC_030136


Basic Information

Item Value
gene id XLOC_030136
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 28497934 ~ 28503177 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061437
CTGTAGCTACGGCCACAGAACCGGAAGTGGGGGTGGGACTAATTAGGAATGGCGGACACCACGTTGGCGCGGCTGTTTGATGGGCCTGCTGCTCACTTGAGGTGAAAACACATGTTGACATGACTATATTAATGGCTGAGAGCTGCTGTATTAAAGCACACCTGTGGCATCACAACGACACGTTACAGATGGGACGTCATGCCCTGGCCAGCATCGTGCAGCGCAGCGTTCAGGTTTATTGTGTGTGCTCGACTCAGCAGGAGCAGCGTGTCTCTCCGCATCAGATCAGGAGCGAGTGTGAGCGTTTCTGACAGAGTGCTAGCAACTGCTGAGGGCGCTTTATTGCTGAGACTGGCTGTTATGGGTGTCACTAATGCTGACTGTCCAAGATGAAAGTTTGCTAAAACTTTCCATTTAAGTGGCAGATAACTTTTTGGCAGAAGTCTGAGTTTTatctaatatttataaacagaACATTTCAAAGAAGTTCATTATTACAAGTTTTGGTAATTGTGGATGAAAACAAATTAACTTGTGTAAATTACAAACTTGATGCACTTTTAGCCACTTGCACAATAAACAGTTAAAAAGGATCATGGTGGGTCATggcatttaaaagaaaaagactATTCCAGTCATTGAAAatcaggaaatgtttttttttttgtccaagttATGAAATATCAGGGATTTTTGTTTGTCGTTGTGCATTTATTAACAACATGTCTTGTTttctatactgtttttttttttcattgtttgatGTGCTTTGCCTATGGTTAGCTGTTCTCTGCATAAATCTCGCAACATTTATTCTTTCCCTTTTTGTCAACTAGATGCCACTTAAGTCAAATGCAGTCTTCTGTCAACATGCAGTCACCTATTAAAATACTGGCTGTGGCTGATTTTTGTCTGCTCAGTTCTGAACACA
>TCONS_00058932
CTGTAGCTACGGCCACAGAACCGGAAGTGGGGGTGGGACTAATTAGGAATGGCGGACACCACGTTGGCGCGGCTGTTTGATGgtgtctgtggtcctttactgacttgGGCCTGCTGCTCACTTGAGGTGAAAACACATGTTGACATGACTATATTAATGGCTGAGAGCTGCTGTATTAAAGCACACCTGTGGCATCACAACGACACGTTACAGATGGGACGTCATGCCCTGGCCAGCATCGTGCAGCGCAGCGTTCAGGTTTATTGTGTGTGCTCGACTCAGCAGGAGCAGCGTGTCTCTCCGCATCAGATCAGGAGCGAGTGTGAGCGTTTCTGACAGAGTGCTAGCAACTGCTGAGGGCGCTTTATTGCTGAGACTGGCTGTTATGGGTGTCACTAATGCTGACTGTCCAAGATGAAAGTTTGCTAAAACTTTCCATTTAAGTGGCAGATAACTTTTTGGCAGAAGTCTGAGTTTTatctaatatttataaacagaACATTTCAAAGAAGTTCATTATTACAAGTTTTGGTAATTGTGGATGAAAACAAATTAACTTGTGTAAATTACAAACTTGATGCACTTTTAGCCACTTGCACAATAAACAGTTAAAAAGGATCATGGTGGGTCATggcatttaaaagaaaaagactATTCCAGTCATTGAAAatcaggaaatgtttttttttttgtccaagttATGAAATATCAGGGATTTTTGTTTGTCGTTGTGCATTTATTAACAACATGTCTTGTTttctatactgtttttttttttcattgtttgatGTGCTTTGCCTATGGTTAGCTGTTCTCTGCATAAATCTCGCAACATTTATTCTTTCCCTTTTTGTCAACTAGATGCCACTTAAGTCAAATGCAGTCTTCTGTCAACATGCAGTCACCTATTAAAATACTGGCTGTGGCTGATTTTTGTCTGCTCAGTTCTGAACACA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006354 DNA-templated transcription, elongation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0009892 negative regulation of metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0051052 regulation of DNA metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0032786 positive regulation of DNA-templated transcription, elongation biological_process
GO:0006260 DNA replication biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:0016607 nuclear speck cellular_component
GO:0008023 transcription elongation factor complex cellular_component
GO:0008024 cyclin/CDK positive transcription elongation factor complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0032806 carboxy-terminal domain protein kinase complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061437 False 931 lncRNA 0.41 3 28497934 28503177
TCONS_00058932 True 956 lncRNA 0.41 4 28497934 28503177

Neighbor

gene id symbol gene type direction distance location
XLOC_030135 NA coding upstream 6416 28393348 ~ 28491518 (+)
XLOC_030134 DNAH10 coding upstream 118599 28308774 ~ 28379335 (+)
XLOC_030133 vamp5 coding upstream 190464 28297250 ~ 28307470 (+)
XLOC_030132 NA coding upstream 205523 28282169 ~ 28292411 (+)
XLOC_030131 vamp8 coding upstream 218570 28271412 ~ 28279364 (+)
XLOC_030137 NA coding downstream 57826 28561003 ~ 28562137 (+)
XLOC_030138 trafd1 coding downstream 267096 28770273 ~ 28790100 (+)
XLOC_030139 si:ch211-186e20.7 coding downstream 294594 28797771 ~ 28802250 (+)
XLOC_030140 zgc:174260 coding downstream 309276 28812453 ~ 28818613 (+)
XLOC_030141 CR559930.1 coding downstream 321435 28824612 ~ 28826140 (+)
XLOC_030126 NA non-coding upstream 843216 27654250 ~ 27654718 (+)
XLOC_030118 NA non-coding upstream 1406630 27076003 ~ 27091304 (+)
XLOC_030117 NA non-coding upstream 1446475 26949711 ~ 27051459 (+)
XLOC_030145 NA non-coding downstream 413342 28916519 ~ 28918961 (+)
XLOC_030148 CT956057.3 non-coding downstream 711353 29214530 ~ 29214646 (+)

Expression


Co-expression Network