XLOC_030137


Basic Information

Item Value
gene id XLOC_030137
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 28561003 ~ 28562137 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061710
taattattaaacaaaatctgttttattGTAAGAGGGGTTACAAAGAAACACCTGTTGTACAcccatttaataaacaaacaaacaatcgaacaaacaaaaatattcaaataccAAAACGAGACATAATTTACACAGGTTTGTATAGGGTCAGTGGTTTAGTCAATAGCAGGGTAGGGTCAAACACGAAGACTTATTCtgtatattaattcttttttttttcttgcaaacaGAACTTTCATATAAGGCTATGTTTACAACAATTCCAAAAACCCGGCTGTTACTTTTTCTTTCTGAATCTTGAACATTACACAAACAGCCAAGAAAgaggtaaaaacaaataaaatatccgAGAGCCTCCCCACtagatttttttaatcatgtgCTTTTAAACTTCTCAACCTAACTGAGAAAATAACGTATTCAGGATAAGGctctaatgcaaaaaaaaaaaaacaccacacacaaacattcaactCTCTCCACAGTAACTGTATGCGATACAAAGAATAATATCAGTATTTTTTAAAACTTGAAAGCACCAAGCCAAACTCAAAATCTCCTCTCTGTCTGCATTGTGTTTTATGTTATCGGAGGGTCTGTCTTTGGTGTGCTTATGATGAACAGGCACAGTGTGTAATGTTTACCACTTCACTATGAGTCTATTGGTTTACTGTCAGATTGATGTGGACAGAAGTGTATACACATACACGACCGTGTTAGGACTTTAGCTTTGAATGGGAGGTGGGGTGAAAACTTTTGTTGTTGAATTTGTTCTCCATGAACAGGCGAGTGTAGAGAGCAGGCCGGGCTCCTGGCAGTGGCTTTGGTAGATGAAGGGGATGAGAT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0061549 sympathetic ganglion development biological_process
GO:0003015 heart process biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060047 heart contraction biological_process
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0005901 caveola cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061710 True 846 lncRNA 0.36 2 28561003 28562137

Neighbor

gene id symbol gene type direction distance location
XLOC_030136 NA coding upstream 57826 28497934 ~ 28503177 (+)
XLOC_030135 NA coding upstream 69485 28393348 ~ 28491518 (+)
XLOC_030134 DNAH10 coding upstream 181668 28308774 ~ 28379335 (+)
XLOC_030133 vamp5 coding upstream 253533 28297250 ~ 28307470 (+)
XLOC_030132 NA coding upstream 268592 28282169 ~ 28292411 (+)
XLOC_030138 trafd1 coding downstream 208136 28770273 ~ 28790100 (+)
XLOC_030139 si:ch211-186e20.7 coding downstream 235634 28797771 ~ 28802250 (+)
XLOC_030140 zgc:174260 coding downstream 250316 28812453 ~ 28818613 (+)
XLOC_030141 CR559930.1 coding downstream 262475 28824612 ~ 28826140 (+)
XLOC_030142 serpina7 coding downstream 268251 28830388 ~ 28832950 (+)
XLOC_030126 NA non-coding upstream 906285 27654250 ~ 27654718 (+)
XLOC_030118 NA non-coding upstream 1469699 27076003 ~ 27091304 (+)
XLOC_030145 NA non-coding downstream 354382 28916519 ~ 28918961 (+)
XLOC_030148 CT956057.3 non-coding downstream 652393 29214530 ~ 29214646 (+)
XLOC_030149 NA non-coding downstream 679657 29241794 ~ 29243160 (+)

Expression


Co-expression Network