G1134544


Basic Information

Item Value
gene id G1134544
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 101625059 ~ 101626529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1292073
gttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccaaaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccccaggtagaatacacagtgttgaccacaggTAGAAAACACAGTGTTGACCCCAGGTAGAATacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaaaacacagtgttgaccacaggtagaatacacagtgttgaccacaggtaaaatacacagtgttgacATGTGTTCAGGATGGGTATTA
>TU1292075
catttgaACATTTGTGACATTCTTTAAACATTTGACGTGAGCACTAAGAGCTAAAAGCTCCTTGATTATAGGTTCCCTAAAGGACATACTTTAACACTTGATATTTTCTAACAAAACAATCTACGGTGCTATCAATACATCTGAAATCATCATTAGAATCATCATTAGAAAGagacaaagcaacaaaataaactCCACACGCTCTTTGGCACAGGTAGAATacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggTAGAATACACAGTGTTGACCCCATGTAGAATacacagtgttgaccacaggTAGAAAACACAGTGTTGACCCCAGGTAGAATacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaaaacacagtgttgaccacaggtagaatacacagtgttgaccacaggtaaaatacacagtgttgacATGTGTTCAGGATGGGTATTA
>TU1292076
catttgaACATTTGTGACATTCTTTAAACATTTGACGTGAGCACTAAGAGCTAAAAGCTCCTTGATTATAGGTTCCCTAAAGGACATACTTTAACACTTGATATTTTCTAACAAAACAATCTACGGTGCTATCAATACATCTGAAATCATCATTAGAATCATCATTAGAAAGagacaaagcaacaaaataaactCCACACGCTCTTTGGCACAGGTAGAATacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacagGTAGAATacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaaaacacagtgttgaccacaggtagaatacacagtgttgaccacaggtaaaatacacagtgttgacATGTGTTCAGGATGGGTATTA
>TU1292078
gttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccaaaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccccaggtagaatacacagtgttgaccacaggTAGAATACACAGTGTTGACCCCATGTAGAATacacagtgttgaccacaggTAGAAAACACAGTGTTGACCCCAGGTAGAATacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaaaacacagtgttgaccacaggtagaatacacagtgttgaccacaggtaaaatacacagtgttgacATGTGTTCAGGATGGGTATTA
>TU1292077
catttgaACATTTGTGACATTCTTTAAACATTTGACGTGAGCACTAAGAGCTAAAAGCTCCTTGATTATAGGTTCCCTAAAGGACATACTTTAACACTTGATATTTTCTAACAAAACAATCTACGGTGCTATCAATACATCTGAAATCATCATTAGAATCATCATTAGAAAGagacaaagcaacaaaataaactCCACACGCTCTTTGGCACAGGTAGAATacacagtgttgaccacaggtagaatacacagtgttgaccccaggtagaatacacagtgttgaccacaggTAGAATACACAGTGTTGAACACAGGTAGAATacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacagtgttgaccacaggtagaatacacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1292073 False 377 lncRNA 0.44 3 101625059 101626126
TU1292075 False 580 lncRNA 0.40 3 101625059 101626529
TU1292076 False 505 lncRNA 0.39 3 101625059 101626529
TU1292078 False 427 lncRNA 0.44 3 101625059 101626126
TU1292077 True 402 lncRNA 0.39 2 101625878 101626529

Neighbor

gene id symbol gene type direction distance location
LOC118937846 LOC106592354 coding downstream 118721 101495095 ~ 101509022 (-)
LOC110519569 LOC106603827 coding downstream 150954 101380799 ~ 101474105 (-)
LOC118937872 NA coding downstream 342686 101271121 ~ 101282373 (-)
LOC110511505 LOC106593326 coding downstream 353961 101154555 ~ 101271098 (-)
LOC118937854 LOC106603827 coding upstream 55969 101682498 ~ 101684312 (-)
LOC110516333 LOC106603753 coding upstream 136583 101763112 ~ 101954471 (-)
LOC118937861 LOC106603827 coding upstream 182356 101808885 ~ 101809452 (-)
LOC110512533 LOC106603753 coding upstream 194234 101820763 ~ 101852176 (-)
LOC118937870 NA coding upstream 401526 102028055 ~ 102099442 (-)
G1134541 NA non-coding downstream 5730 101618156 ~ 101619329 (-)
G1134537 NA non-coding downstream 9875 101612827 ~ 101615184 (-)
G1134527 NA non-coding downstream 42780 101580067 ~ 101582279 (-)
G1134523 NA non-coding downstream 60058 101558741 ~ 101565001 (-)
G1134524 NA non-coding downstream 60894 101559190 ~ 101564165 (-)
G1134550 NA non-coding upstream 8192 101634721 ~ 101652497 (-)
G1134554 NA non-coding upstream 32023 101658552 ~ 101669199 (-)
G1134558 NA non-coding upstream 45576 101672105 ~ 101672674 (-)
G1134351 NA non-coding upstream 61716 101688245 ~ 101811206 (-)
G1134562 NA non-coding upstream 63963 101690492 ~ 101691355 (-)
G1134515 NA other downstream 30615 101536397 ~ 101594444 (-)
G1134288 NA other downstream 173080 101446166 ~ 101451979 (-)
G1134312 LOC106603827 other downstream 536504 101076062 ~ 101088555 (-)
G1134323 NA other downstream 626543 100993810 ~ 100998516 (-)
G1134303 LOC106601187 other upstream 129601 101756130 ~ 101817671 (-)
G1134287 LOC106592354 other upstream 319073 101437772 ~ 101954443 (-)
G1134612 NA other upstream 348120 101974649 ~ 101976006 (-)
G1134325 NA other upstream 606509 102233038 ~ 102233671 (-)
G1134301 NA other upstream 608560 102235089 ~ 102236521 (-)

Expression


Co-expression Network