XLOC_030138 (trafd1)


Basic Information

Item Value
gene id XLOC_030138
gene name trafd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 28770273 ~ 28790100 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058933
TCCGTCACCATCTGTCAGTGTTGCTGTTTTCGCGGAGACCGCCTATTGCTGATAGTGTACATTACTGTGTCATGAAACGAAAGCTGAACAGCGGTACTCTACACAGATCTACCTCTGGTCGCTATTAGTATATTACTATTTTCTGTGTAGATATACAGTGTCTAATGACTCGAGTCATATGACCAAGCGCTACTGGAGCGTTACAGCTCACCAGCAATGGACACTTTTCGCTATGGCAGCCCGGAAATTTAGATTAAACCACGTAGACTTTAAAGCTGCTATTGTGCCTAATATGTGGACAGAATACAGTTGACTGGTTTGATATCCATAAATATTTCCGAGAACAAGGACGAACTGTACTAGCGAAGAGTTTACTTCTGCAGCTTCAGGTGGTTGCTAACAAGCTTCAGCCATAAAAAAGACAATGGCCGAAGAAAACACACAATTTTGCAGTAATTGCAAGCATAACATTCCAGAAGCCAACTTTACAACACATGAGATTCACTGTCGGAGGAACATTGCTCTGTGTGAAGTGTGCCAGGAGCCTTTTCCTCATGCTGAGCTTGTGCAGCACAAAGAGATGGACCATGCAGAGGAACAGTGCAAATGtggattaaaaatagaaaaaaggtTCTTGGAGACCCACCAGAGGTCAGAATGCAGTCATCGACTGGTCCCATGTCAGTTCTGTGATCTAGAGCTGGCCTCCTTTCAAGCTAAAGAGCATGAGGAGTACTGCGGGACCCGCACCGAGCCCTGTCCCGTCTGCAAGTGCAATGTTATGCTGAGAGAACAACACATCCATCCAGCCCTGTGCGGAAGTCTGACTCCACCTGAGGAGAGGCACAGTAGTAGGGCAGGGCCCCAGTCTCCTGGAGCATGGTTTGAGACACATTCCATCCATAACCTATTGAGGGCCCAGGAAAGGAgccataataacaacaacaccgGGGCAGCAGACCGCAGAGGCCCACCACGACCCATTGAGGACAGACTGCATAACAGTACCAGAGGAACAGTGAGAGGAGGAACCAGGAGAAACACAGAAACGAGGAACAATGAATTTGCTTATTTGCTGGATCAGGAAACGGAGCTCgggaacaacaacaacagcctgCTGTGGTCTCTGGGACAACTGCCAGACTACGAGTCGTCCAGTCTGGACTACATGCTGGCCCTCAGCCTGCAGACTGAAGGTGACTTGGAGGACCCCCGACAAGAGGGTGTGTGGACTGATGTATGGGACCAACGCATGGGAAGGACTCCAGCCCATAGCAATCTCACTTCCCAGCTCTCCTCCAACACCAGCAAGAACTGCACCACAGCTCCCCCTAAAACCCACACAAACCTGGGCCAAAGCCCTTCCTCAAACATCATGCTGCCTTGTGAGTTCTGTGAAGAGCTCTTTCCAGAGGAGGACCTCATCTTACACCAGACCGGCTGCAGTCCAGCCTCTGCTATCGCTTCCTTCAGTAAACAAGTTCCTTCTCTCCAATATGAAGACATCATCCCTCAAGGGACTAGCCATGTCATTCCTCCTCGAACACCCAGTCCACCCACTCTGCCTCTCTCCGTTTCTCCAATTTCCTACAGTTCCTCCTCCAGCCCAGTTGAGGGTGATGTGCTCATTCCTTGTGAGTTTTGTGGCGTTGCCTTGGAGGAGAATGTACTCTTTCACCACCAGGACAAGTGTGACCTCCGGCCCCATACAGCTTATTTTGTTGATGGAGTGTCTTCACGAAAACCTCATCACACCACCAAAGAGACCCACGAGAGGAGATCGCCTGAGAGGCAGAGGAGGGTGAGACATCAAGCTGACCCAGATGAGGAGCTCCTGCAGCAGACGGCTCACGGGTGGCAGAGAGGCTCCTCAGCTTTAGACCAGTGGCCCTCAGCCCACAGTTACACCAAAAACACCAATGCTGAGCAGCAGGTCAAGAGCAGGAACCAAAGGCGCAGAGCTGTAGAAGTCAATACGTATCTCAGCGACAGCCCAAAGCCCCATTCTACAACTACTTCGGGAACTCCACACAGAGGAAGACTCGAAGGTCGAAGGAATGAGAAAAACACAGAGACACCAAAGGTGCCTAAAAAACATAACGTTGAAAAAGAGGAGGAGTAGAAAATGAGGAAGTAAACCTTTTTTAGTTTCTCACTCAAACCTCAAGCAGTGACCTGTTGTTGTGGTTTGTAGGCAATTATGTTtgtgtttataaaacatttacataTCCATGTGAATTGATCAATTCTTTGGCTTGTAAATGGATTTCTTTGATTGCACTagttcatttttttcttcttcgtaCTTTTTTCTATGTTGTTTGTATGTAATTTTAACAGTTTTAAGCTTTGCCTTTGTTTGGTTTGAAAGACATTGaagaaatgttttatatttgaagGAAATCTCCACACGTTGTAGTATAAATATAGAAACTCCCTTAACCCTTTGCTGTAATGTTGTATGCTTTAGTTAATGCAATGGTTAACATGAACGATACTGCATTTATTGATCctggttaatattatttttaacatacaCAAACTCTAATAAACCTGTTACCAACATTACATAAATTTAACattaacaatgattaataaatgctgtaaaataatgATACGgaatgcattaactgatgttaactATAATCTAAAGCATAACATAATTTTACTGTAAGCCTGTCTGTTTGGTGGAACAATTGGTTATTTTGTTGAGAGGATTGTTTATCTTCCTTTGCTCATGTATCCATCACATCTTTTCAATAAAAAGATTTTGCTGTGGCTGAAA
>TCONS_00058934
GTTCAGTTTATACGGACAGAGTGGACTTTAAAAGTCACCTAGTAGAGAAATAATGTTTGCTTAACTTCGACAATGGCCGAAGAAAACACACAATTTTGCAGTAATTGCAAGCATAACATTCCAGAAGCCAACTTTACAACACATGAGATTCACTGTCGGAGGAACATTGCTCTGTGTGAAGTGTGCCAGGAGCCTTTTCCTCATGCTGAGCTTGTGCAGCACAAAGAGATGGACCATGCAGAGGAACAGTGCAAATGtggattaaaaatagaaaaaaggtTCTTGGAGACCCACCAGAGGTCAGAATGCAGTCATCGACTGGTCCCATGTCAGTTCTGTGATCTAGAGCTGGCCTCCTTTCAAGCTAAAGAGCATGAGGAGTACTGCGGGACCCGCACCGAGCCCTGTCCCGTCTGCAAGTGCAATGTTATGCTGAGAGAACAACACATCCATCCAGCCCTGTGCGGAAGTCTGACTCCACCTGAGGAGAGGC
>TCONS_00058935
aaaaaaaactcatttttaatgcaaatatttcataattttagttttatattatttttgatacAAACTtaaatgagtttccttcttctgttaaacacaaaataagatattttaaaaaactgaaaacctgtatcTATTGACTTCTATTTTATTTTGGACAAAAATATACTACAGAattcaatggctacaggtttccagctttattatttataattttattatatttattatatttataacaagaataaaaaataaaggtttaaaacaagtaaacccAGTAAATGATTGCAtaatttgagtgaactatccctttaaggtttcTAATTTTGACAAGTACTTTATGACTTGTTTCAAATAGCatgatattaatattgttaaCCATATTTAAAACGTTTTCCTTTATTATAGGTTGCTAATTACCAATCTTATCCTCTCTTTTTACAGGAACAGTGCAAATGtggattaaaaatagaaaaaaggtTCTTGGAGACCCACCAGAGGTCAGAATGCAGTCATCGACTGGTCCCATGTCAGTTCTGTGATCTAGAGCTGGCCTCCTTTCAAGCTAAAGAGCATGAGGAGTACTGCGGGACCCGCACCGAGCCCTGT

Function

symbol description
trafd1 Predicted to enable zinc ion binding activity. Orthologous to human TRAFD1 (TRAF-type zinc finger domain containing 1).

GO:

id name namespace
GO:0007005 mitochondrion organization biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-43 Predicted to enable zinc ion binding activity. Orthologous to human TRAFD1 (TRAF-type zinc finger domain containing 1).

Ensembl:

ensembl_id ENSDARG00000075123

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058933 False 2785 mRNA 0.45 11 28770273 28790100
TCONS_00058934 False 493 mRNA 0.47 5 28770828 28773986
TCONS_00058935 True 606 lncRNA 0.30 2 28773214 28773901

Neighbor

gene id symbol gene type direction distance location
XLOC_030137 NA coding upstream 208136 28561003 ~ 28562137 (+)
XLOC_030136 NA coding upstream 267096 28497934 ~ 28503177 (+)
XLOC_030135 NA coding upstream 278755 28393348 ~ 28491518 (+)
XLOC_030134 DNAH10 coding upstream 390938 28308774 ~ 28379335 (+)
XLOC_030133 vamp5 coding upstream 462803 28297250 ~ 28307470 (+)
XLOC_030139 si:ch211-186e20.7 coding downstream 7671 28797771 ~ 28802250 (+)
XLOC_030140 zgc:174260 coding downstream 22353 28812453 ~ 28818613 (+)
XLOC_030141 CR559930.1 coding downstream 34512 28824612 ~ 28826140 (+)
XLOC_030142 serpina7 coding downstream 40288 28830388 ~ 28832950 (+)
XLOC_030143 zgc:174259 coding downstream 58770 28848870 ~ 28851407 (+)
XLOC_030132 NA non-coding upstream 477862 28282169 ~ 28292411 (+)
XLOC_030126 NA non-coding upstream 1115555 27654250 ~ 27654718 (+)
XLOC_030145 NA non-coding downstream 126419 28916519 ~ 28918961 (+)
XLOC_030148 CT956057.3 non-coding downstream 424430 29214530 ~ 29214646 (+)
XLOC_030149 NA non-coding downstream 451694 29241794 ~ 29243160 (+)

Expression


Co-expression Network