XLOC_030139 (si:ch211-186e20.7)


Basic Information

Item Value
gene id XLOC_030139
gene name si:ch211-186e20.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 28797771 ~ 28802250 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058936
ACCAACCGTAAGGGCACAGGCTTTATAACTCAGTCTAGTTTGAGAAGAGGAACAACAGTTGTCTTTAGAGGTAgggaaatcatttttttttagatctgaaATAttgaataattgttttgtttgataaataaatgcaaatctgatcttgtagaagaaaagaaaaataaagcagcTAAATTGTTCATCGTTGCTGATGCGTCAAACTGTCATGAACATGTCCTCCTTGTCACTAATATGTTCTCAAACTCTTTCTGTTATATTTCCCCTCAGAGCCTTCAAATAAAACCATGGAACGGAACGGTGTACTTTTGTGGATTTTTGGTTTTGCAATAGTTGTCTGTGGGAATCAAGAGACTTTACAACAACCTCCCATTAGCGCTAAACTCCCGTCATTGATAAACATGAACAACGATTTTGCTTTTCACCTGTACAAAAGGGTTATTGAATTGCCTGACTATCAGTCCAAAAACATCTTCTTCTCTCCGTTCAGTGTGTCTATGGCCCTTTCTGAGCTTTCTTTAGGAGCCGGTGGAGACACCAAACAGCAGCTTCTCAGTGGCATTGGCTACAACAGCACAATCTTCAGCACTGAGGAAATGCACCAGCTGTTTCACAGTCTCCTGGAAGACATCAGCAATAGGACAGGAGTGGATATCGATGTCGGCACTGCTCTTTATGCAAGCGACCGATTTAAGCCTCATtccaagtttctggaggacatgAAGGAGTTTTACCACTCTGATGGCTTCACTGTAGATTTCAGGGTCAAAGAAACAGTCGATCAAATTAATaattatgcaaagaaaaaaacacaaggaAAAATCAATCAAGCTGTTGATAATCTGGAAGACGATACTTTGATGTTTCTtctcacatatatatattttaaagGAAAATGGGACAAGCCTTTTAAGCCAGAAAAAACCCGTGAGAGTACATTTCATATAGATGATAAGACCACAGTTACGGTGCAAATGATGCATCAGTATGAACGTCTCAAAGTCTTTTATGATGCTGAACTGTCCACTAAAGTCCTCTGTCTTGACTACAAGGATTCCTTCTCCATGTTTCTGGCTGTCCCAGATGATAAAATGGAGCAAAAAAACATCAAAGATCTAGAGATGACAGTCTCTAGACAGCACGTTGAAAAGTGGAAGAGAAGTGCCTTTAAAAAAACAGTTGACATCTACGTCCCCAAGCTTTCTCTGAAAACATCATACTCCTTGAAGGATATTTTGAAGGGAATGGGAATGGCTGATATATTTTCAGATAAAGCCAACTTTACAGGAGTTTCAGAGGAAAAGATCTTCGTTTCAAAGGTTTTGCATAAAGCCACTCTGGATATCGATGAGCAAGGAACCACCGCAGCAGCAGTGACAGGAGTTTCAATGAGAGTAAGGTTACACAACCCATTgagtattttaaaatttaatcgCCCATTCATGATCTTTATCACGGATCAAACAAATGACAACATCCTTTTCTTTGGGAAAGTCGTCAACCCAAATGAAAAACTGTGATGTTGCCCACAAGatgttaagacaatgttagccaGTAGGTGGAAACCATTTAACAACTGCAGTGCCATAGATTGCAGATTTTGTAGAgttcagtttttattgttttaacacATCTGAAGCAGCTTATTTACTGTAGGTGAtggttggaaaaaaataaactgcaaGAAATTGATTTGATTCCTTTTATACACCACACATTTAGTGTtttaaggtgctgtatgtaagtttttgatttttctaaagcataaaaaacaccataatatgtttgcagatatttaaaaaacatgctaagtgaacatgtttatctgaaaaacaatgctgaagtcagattttCTGTTTTTACAATGTCCATTACATGCTAGAactgctgtctttgttttggttcttttaacccacccactgccagtttagcaaTTATATTTAGCACCCCTGGTTGCTAGTACaccttatttaatttgtttaaaggtAATTATATAGACAGTATAGgtgaaaatgtaattatttggaggcatgtaaacatagtcactgagTCTTTATGTCACTGGAACACTAGGGTGATTAAATTAGTTCAGAtaagattcaactttattgtaattcaacatgtacaagtacaaagcAATGAAATGCACCTTCTGTTGTAATAACTAGAATCAGCTACAGTTTTCTATTAATAATGAGGAATATGCACACTGATATGAACATAATATACAAGTTGTTATTTGCTACAAACAGGAGTTGCAAATAGATATGTAGATATGTAAGTCATAAGTTCAATGTATATGCACAGTGGATATGTATATGTGCAGAGTGGTGCAATGATTATGTGCTATATTAAGTGTGCTATGGTGCAATGGGAGTTCAAGTTATGGGGTGGGGTGTAGATGCACAAGTACTACTAAATGAATGTTACGCACAGCTACGagcagaaaagaaaacaaatttggATGGGAACTGTTTTCTGTAATTTTGTATAACTGTATGAAGTAGGGTTTAGCGATGCTGACCAATTTGACATCgcatgatgtctaatgtgaaacatcaagatggacgatggcatcgtcgttgtaggtggcagtgaattaattatttataaaataattaattcataatgaatcAATTATTTGTATAGtctaccatttcaactacctggggtccattcttcgtacctcgcttaaatgatatAAGATGATTTGTCttatcctggatctgttcatcttgataactgatctctggctaatttggtttttcaaacaagtttgcgaatcagattaaaaagtctggatgaactgatctgaaatcgctgcatgtgttgtgaaggactgatctatcctGATCATGATCAGTAAtgtaacgattggctgacggcacagcagcgtaatgacatcatctgattaatattcaattatccataacagcaaaattacatcaaattagcattAAATGGTTTGtgaaatatgacacgcaataacttctcacgtttgttgtgggctgcaggctttacactttcatgtgtcaagagaattcatcatttatttcattGCATATCAATGTATCGAatcgaatattgtgcatgtacgcGTTTGCATCttaaaagttcatatcaataaattttgtCTTTGAACCACCAA
>TCONS_00058937
ATAACTCAGTCTAGTTTGAGAAGAGGAACAACAGTTGTCTTTAGAGAGCCTTCAAATAAAACCATGGAACGGAACGGTGTACTTTTGTGGATTTTTGGTTTTGCAATAGTTGTCTGTGGGAATCAAGAGACTTTACAACAACCTCCCATTAGCGCTAAACTCCCGTCATTGATAAACATGAACAACGATTTTGCTTTTCACCTGTACAAAAGGGTTATTGAATTGCCTGACTATCAGTCCAAAAACATCTTCTTCTCTCCGTTCAGTGTGTCTATGGCCCTTTCTGAGCTTTCTTTAGGAGCCGGTGGAGACACCAAACAGCAGCTTCTCAGTGGCATTGGCTACAACAGCACAATCTTCAGCACTGAGGAAATGCACCAGCTGTTTCACAGTCTCCTGGAAGACATCAGCAATAGGACAGGAGTGGATATCGATGTCGGCACTGCTCTTTATGCAAGCGACCGATTTAAGCCTCATtccaagtttctggaggacatgAAGGAGTTTTACCACTCTGATGGCTTCACTGTAGATTTCAGGGTCAAAGAAACAGTCGATCAAATTAATaattatgcaaagaaaaaaacacaaggaAAAATCAATCAAGCTGTTGATAATCTGGAAGACGATACTTTGATGTTTCTtctcacatatatatattttaaagGAAAATGGGACAAGCCTTTTAAGCCAGAAAAAACCCGTGAGAGTACATTTCATATAGATGATAAGACCACAGTTACGGTGCAAATGATGCATCAGTATGAACGTCTCAAAGTCTTTTATGATGCTGAACTGTCCACTAAAGTCCTCTGTCTTGACTACAAGGATTCCTTCTCCATGTTTCTGGCTGTCCCAGATGATAAAATGGAGCAAAAAAACATCAAAGATCTAGAGATGACAGTCTCTAGACAGCACGTTGAAAAGTGGAAGAGAAGTGCCTTTAAAAAAACAGTTGACATCTACGTCCCCAAGCTTTCTCTGAAAACATCATACTCCTTGAAGGATATTTTGAAGGGAATGGGAATGGCTGATATATTTTCAGATAAAGCCAACTTTACAGGAGTTTCAGAGGAAAAGATCTTCGTTTCAAAGGTTTTGCATAAAGCCACTCTGGATATCGATGAGCAAGGAACCACCGCAGCAGCAGTGACAGGAGTTTCAATGAGAGTAAGGTTACACAACCCATTgagtattttaaaatttaatcgCCCATTCATGATCTTTATCACGGATCAAACAAATGACAACATCCTTTTCTTTGGGAAAGTCGTCAACCCAAATGAAAAACTGTGATGTTGCCCACAAGatgttaagacaatgttagccaGTAGGTGGAAACCATTTAACAACTGCAGTGCCATAGATTGCAGATTTTGTAGAgttcagtttttattgttttaacacATCTGAAGCAGCTTATTTACTGTAGGTGAtggttggaaaaaaataaactgcaaGAAA

Function

symbol description
si:ch211-186e20.7 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in negative regulation of endopeptidase activity. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in several diseases, including alpha 1-antitrypsin deficiency; artery disease (multiple); chronic obstructive pulmonary disease (multiple); inflammatory bowel disease (multiple); and liver disease (multiple). Orthologous to several human genes including SERPINA1 (serpin family A member 1) and SERPINA12 (serpin family A member 12).

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110407-6 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in negative regulation of endopeptidase activity. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in several diseases, including alpha 1-antitrypsin deficiency; artery disease (multiple); chronic obstructive pulmonary disease (multiple); inflammatory bowel disease (multiple); and liver disease (multiple). Orthologous to several human genes including SERPINA1 (serpin family A member 1) and SERPINA12 (serpin family A member 12).

Ensembl:

ensembl_id ENSDARG00000077960

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058936 False 3148 mRNA 0.36 4 28797771 28802250
TCONS_00058937 True 1464 mRNA 0.39 5 28797795 28800790

Neighbor

gene id symbol gene type direction distance location
XLOC_030138 trafd1 coding upstream 7671 28770273 ~ 28790100 (+)
XLOC_030137 NA coding upstream 235634 28561003 ~ 28562137 (+)
XLOC_030136 NA coding upstream 294594 28497934 ~ 28503177 (+)
XLOC_030135 NA coding upstream 306253 28393348 ~ 28491518 (+)
XLOC_030134 DNAH10 coding upstream 418436 28308774 ~ 28379335 (+)
XLOC_030140 zgc:174260 coding downstream 10203 28812453 ~ 28818613 (+)
XLOC_030141 CR559930.1 coding downstream 22362 28824612 ~ 28826140 (+)
XLOC_030142 serpina7 coding downstream 28138 28830388 ~ 28832950 (+)
XLOC_030143 zgc:174259 coding downstream 46620 28848870 ~ 28851407 (+)
XLOC_030144 si:ch211-186e20.2 coding downstream 55719 28857969 ~ 28859840 (+)
XLOC_030132 NA non-coding upstream 505360 28282169 ~ 28292411 (+)
XLOC_030126 NA non-coding upstream 1143053 27654250 ~ 27654718 (+)
XLOC_030145 NA non-coding downstream 114269 28916519 ~ 28918961 (+)
XLOC_030148 CT956057.3 non-coding downstream 412280 29214530 ~ 29214646 (+)
XLOC_030149 NA non-coding downstream 439544 29241794 ~ 29243160 (+)

Expression


Co-expression Network