XLOC_030152 (ddx31)


Basic Information

Item Value
gene id XLOC_030152
gene name ddx31
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 29714786 ~ 29745566 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058956
AATGCCTTCAACTTGTAGTGGACGGAGTAAAAACACGTGTGAAACTTTTCTCTCTAGATGTGCAGTTGTTTACATTGAATATTCACGGTGTAAACGTTAACGCCATGCGCATTTAACGTGCTGCTGACATTTCCGTCACTCGAATAAAGGATAATATTTCCTTTAGCTAGCGCGAGTGTTCTGTCAGAGCGTGGTATAGATATTTTACTAGTACACCTCTTGTTTTAAAAGGGGTTTACAACCTGTTTGCGGTCATGGCTGAGGACACGCTGATGCTCAACATCTCCTCAGGTTCTGTACagtttaacagaaaaacaaaccaGAAGCATTTGTCATCATCAGAGAAATGGGCACAGAAAAAGAGAGTGGCAAAAAGGAAGGCTGCCGTTGAGCCCCAAGAGAGCAGCGCCTCTAAACAGAGGAAGATTAATCAAACTGGTCAACAGCACGCACAAAAGCAAACGCTGCAAACCCCTAGAAGCCCCTCTCAGAGGAGCAATAACAGAGACACAGAGGAGAGCCCGGTCCAGAGAGAAAACTCAGAAGCAAAGTCCCCATCAAAGGTGAAAACATTTCCAAAGAAAGCTCCCACAGAGCATGAAGACCATGGCAGACCATTTATCAAGACATCGTCTCTCTTCAGAAACAACCCAGAGATCCCTGATGTCCTCAGtCCTGCTGTAAATCAAGTGAAGGAGAAAGTCTTCACCAGCAACACGTTTGAAGAGCTGAATCTGCATCCACATCTGGTGGCCACGCTCCATAAGGTGTTGAACGTTAGCAGTATGACGAGTGTCCAGAAACAGACCATACCAGTGCTGATGTCTGGTAAAGATGCTGTAGTGCGCTCCCAGACTGGATCAGGGAAAACATTGGCATATGGGATTCCAATGGTTCAGTTTTTACAAGCGATTCAACCGAAAGTCAAGagATCGGATGGGCCTTTAGCTGTTGTGATTGTTCCAACCAGAGAGCTTGCCTTGCAGAGCTTTCAGATGTTTCAGAAGCTTCTTAGACCTTTCACCTGGATTGTTCCAGGAGTTTTAATGGGaggagagaaaaagaaagcagAAAAAGCCagACTGCGGAAGGGCATAAATGTTCTGATCTCGACTCCAGGCCGACTGGTGGACCACATCAAGAACACACTAAGTATTGCTTTCAGTGCTGTGCGCTGGCTCATTCTGGATGAAGCTGACAGGATTTTGGATTTGGGCTTTGAGAAAGATCTGACTGTGATTCTGAATGCACTGAACGCCGCTGGACCCGACAGGCAAAATGTGCTGCTTTCAGCTACTATAACTGAAGGACTGTCCCGATTAGCCAGTATCAGTATGAAGGATCCTGTGAGTGTCCATGTGTCAGAGGGGAGTGAGGAGACAGTTGAAGCGTGTCCCCAGGCGGCCCCTCAGGCTCTGTCAGACAGCTACGCAGTGCCTGAGAGACTACAGCAGCACGTGGTGGTGGTGCCCAGCAAGCTCCACCTGGTCTGTTTGGCTGCCTTTATTCTGGCCAAATGCAAGTTTGAGCAGCGTCAGAAGTTGATCATCTTCATATCCAGCTGTGAAGCTGTAGAGTTTCTGCTCAATCTCTTTACTGCAGTCCTCTGTGAAATTCCCAGCAACACCTCATCTAAAAGTACCTCATGCCTCAACTTCTACAGACTGCATGGCAACATGAGACAGGAGgaGCGCACTGAAGTCTTCCAAGAGTTCTCTCAGTGTAAAACTGGCATTCTGCTGTGTACGGATGTAGCTGCACGTGGTTTGGATTTGCCTCAGGTTACTTGGATTGTTCAGTACAATCCTCCAGTTTCTGCAGCAGAATATGTTCATCGTGTGGGCCGCACAGCTCGAATCGGAGCTCAGGGTAGCAGCCTGCTCTTTCTCACCCCCTCCGAGACCGCTTTTGTGGATGTGCTGGCCAATCACAACATCAGTTTGTCTGAGATGAAGATGGTGGACATCCTGTCCACACTAATGAAAGACGAGCGCTTTAAAGGCAGAGGGAAATGGGACAGCAAGAGATCAGCGGATGCTTTTGAGCAGGAGGTGCGAGAGAGAGCCACCTTGTTACAGACTGACTTTGAGAATTATGTTCATGCCAGTAACGAGTCTCTGCAAACTGCGAAGAGCGCACTGCAGTGTTTCTTGAGAGCTTATACCACATACCCATCCAGTCTAAAGCACATCTTCCACATCCGCATGCTGCACCTGGGCCACGCTGCTAAGAGCTTTGGCCTGAGGGACGCACCCCAGGGCCTGGCCAGCTCCATAAGCACTAATCCTGCCAACAGCAAACACTCCAAGAAGGCCAAAGACAAAGCCAAGAGcCCTCCCAAGAAACTCACAGCAAAGCAGCGGGTGTCAAACCTCATGCGTTCAGAGTATGACAGTGGCATGGATGGACAATCTAAGGCTaagaagaaaaggaaaaataAGAAGGGTCAAGCAGAGGAATCTACCGATGCATAAAGTGGCCAATACAGGAGagatcagagatgctcttttcgTTTGGGAAGTGCTGAGGTTAGAGTTGTCGTGACCAGGTGGATTCTCAGGGTTGAACACACAGGTGTTTTTCCACAGAGTAACATTTTTTTAGATGTGAAAAAGCACAACCGGTCAGCAGAACAATCTGGGAATTTGCTCAATGCAAAAGCTTAGTTGCAGATGGGAAAATGAGCATGCATGGATTTCTTGCAGTGggtttatgaatttatttttataaatattctgccttatttaagcaatattttattaaaaaaatgctgaatttGA
>TCONS_00058957
ATGGCTGAGGACACGCTGATGCTCAACATCTCCTCAGGTTCTGTACagtttaacagaaaaacaaaccaGAAGCATTTGTCATCATCAGAGAAATGGGCACAGAAAAAGAGAGTGGCAAAAAGGAAGGCTGCCGTTGAGCCCCAAGAGAGCAGCGCCTCTAAACAGAGGAAGATTAATCAAACTGGTCAACAGCACGCACAAAAGCAAACGCTGCAAACCCCTAGAAGCCCCTCTCAGAGGAGCAATAACAGAGACACAGAGGAGAGCCCGGTCCAGAGAGAAAACTCAGAAGCAAAGTCCCCATCAAAGGTGAAAACATTTCCAAAGAAAGCTCCCACAGAGCATGAAGACCATGGCAGACCATTTATCAAGACATCGTCTCTCTTCAGAAACAACCCAGAGATCCCTGATGTCCTCAGtCCTGCTGTAAATCAAGTGAAGGAGAAAGTCTTCACCAGCAACACGTTTGAAGAGCTGAATCTGCATCCACATCTGGTGGCCACGCTCCATAAGGTGTTGAACGTTAGCAGTATGACGAGTGTCCAGAAACAGACCATACCAGTGCTGATGTCTGGTAAAGATGCTGTAGTGCGCTCCCAGACTGGATCAGGGAAAACATTGGCATATGGGATTCCAATGGTTCAGTTTTTACAAGCGATTCAACCGAAAGTCAAGagATCGGATGGGCCTTTAGCTGTTGTGATTGTTCCAACCAGAGAGCTTGCCTTGCAGAGCTTTCAGATGTTTCAGAAGCTTCTTAGACCTTTCACCTGGATTGTTCCAGGAGTTTTAATGGGaggagagaaaaagaaagcagAAAAAGCCagACTGCGGAAGGGCATAAATGTTCTGATCTCGACTCCAGGCCGACTGGTGGACCACATCAAGAACACACTAAGTATTGCTTTCAGTGCTGTGCGCTGGCTCATTCTGGATGAAGCTGACAGGATTTTGGATTTGGGCTTTGAGAAAGATCTGACTGTGATTCTGAATGCACTGAACGCCGCTGGACCCGACAGGCAAAATGTGCTGCTTTCAGCTACTATAACTGAAGGACTGTCCCGATTAGCCAGTATCAGTATGAAGGATCCTGTGAGTGTCCATGTGTCAGAGGGGAGTGAGGAGACAGTTGAAGCGTGTCCCCAGGCGGCCCCTCAGGCTCTGTCAGACAGCTACGCAGTGCCTGAGAGACTACAGCAGCACGTGGTGGTGGTGCCCAGCAAGCTCCACCTGGTCTGTTTGGCTGCCTTTATTCTGGCCAAATGCAAGTTTGAGCAGCGTCAGAAGTTGATCATCTTCATATCCAGCTGTGAAGCTGTAGAGTTTCTGCTCAATCTCTTTACTGCAGTCCTCTGTGAAATTCCCAGCAACACCTCATCTAAAAGTACCTCATGCCTCAACTTCTACAGACTGCATGGCAACATGAGACAGGAGGATGTAGCTGCACGTGGTTTGGATTTGCCTCAGGTTACTTGGATTGTTCAGTACAATCCTCCAGTTTCTGCAGCAGAATATGTTCATCGTGTGGGCCGCACAGCTCGAATCGGAGCTCAGGGTAGCAGCCTGCTCTTTCTCACCCCCTCCGAGACCGCTTTTGTGGATGTGCTGGCCAATCACAACATCAGTTTGTCTGAGATGAAGATGGTGGACATCCTGTCCACACTAATGAAAGACGAGCGCTTTAAAGGCAGAGGGAAATGGGACAGCAAGAGATCAGCGGATGCTTTTGAGCAGGAGGTGCGAGAGAGAGCCACCTTGTTACAGACTGACTTTGAGAATTATGTTCATGCCAGTAACGAGTCTCTGCAAACTGCGAAGAGCGCACTGCAGTGTTTCTTGAGAGCTTATACCACATACCCATCCAGTCTAAAGCACATCTTCCACATCCGCATGCTGCACCTGGGCCACGCTGCTAAGAGCTTTGGCCTGAGGGACGCACCCCAGGGCCTGGCCAGCTCCATAAGCACTAATCCTGCCAACAGCAAACACTCCAAGAAGGCCAAAGACAAAGCCAAGAGcCCTCCCAAGAAACTCACAGCAAAGCAGCGGGTGTCAAACCTCATGCGTTCAGAGTATGACAGTGGCATGGATGGACAATCTAAGGCTaagaagaaaaggaaaaataAGAAGGGTCAAGCAGAGGAATCTACCGATGCATAA
>TCONS_00058958
GATGTAGCTGCACGTGGTTTGGATTTGCCTCAGGTTACTTGGATTGTTCAGTACAATCCTCCAGTTTCTGCAGCAGAATATGTTCATCGTGTGGGCCGCACAGCTCGAATCGGAGCTCAGGGTAGCAGCCTGCTCTTTCTCACCCCCTCCGAGACCGCTTTTGTGGATGTGCTGGCCAATCACAACATCAGTTTGTCTGAGATGAAGATGGTGGACATCCTGTCCACACTAATGAAAGACGAGCGCTTTAAAGGCAGAGGGAAATGGGACAGCAAGAGATCAGCGGATGCTTTTGAGCAGGAGGTGCGAGAGAGAGCCACCTTGTTACAGACTGACTTTGAGAATTATGTTCATGCCAGTAACGAGTCTCTGCAAACTGCGAAGAGCGCACTGCAGTGTTTCTTGAGAGCTTATACCACATACCCATCCAGTCTAAAGCACATCTTCCACATCCGCATGCTGCACCTGGGCCACGCTGCTAAGAGCTTTGGCCTGAGGGACGCACCCCAGGGCCTGGCCAGCTCCATAAGCACTAATCCTGCCAACAGCAAACACTCCAAGAAGGCCAAAGACAAAGCCAAGAGGTACTGCAACTTCTCAAAAATTGGACAGTCATTTATTAATCTGTCAAACAGTTTGCTGTGCCAGAGAGTATGATctagttttgcttttaaataaatttagCTGGGT

Function

symbol description
ddx31 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be involved in ribosome biogenesis. Predicted to be active in nucleus. Orthologous to human DDX31 (DEAD-box helicase 31).

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-3973 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be involved in ribosome biogenesis. Predicted to be active in nucleus. Orthologous to human DDX31 (DEAD-box helicase 31).

Ensembl:

ensembl_id ENSDARG00000035507

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058956 False 2780 mRNA 0.47 20 29714786 29745566
TCONS_00058957 False 2160 mRNA 0.49 19 29715040 29745260
TCONS_00058958 True 690 mRNA 0.49 5 29726428 29731881

Neighbor

gene id symbol gene type direction distance location
XLOC_030151 tsc1a coding upstream 2838 29652198 ~ 29711948 (+)
XLOC_030150 NA coding upstream 148961 29560059 ~ 29565825 (+)
XLOC_030149 NA coding upstream 471626 29241794 ~ 29243160 (+)
XLOC_030148 CT956057.3 coding upstream 500140 29214530 ~ 29214646 (+)
XLOC_030147 dpp7 coding upstream 537514 29159777 ~ 29177272 (+)
XLOC_030153 NA coding downstream 38606 29784172 ~ 29792624 (+)
XLOC_030154 thy1 coding downstream 48492 29794058 ~ 29803293 (+)
XLOC_030155 usf1l coding downstream 57814 29803380 ~ 29817848 (+)
XLOC_030156 f11r.2 coding downstream 74700 29820266 ~ 29825846 (+)
XLOC_030157 f11r.1 coding downstream 85629 29831195 ~ 29848772 (+)
XLOC_030145 NA non-coding upstream 795825 28916519 ~ 28918961 (+)
XLOC_030141 CR559930.1 non-coding upstream 888646 28824612 ~ 28826140 (+)
XLOC_030159 NA non-coding downstream 156587 29902153 ~ 29988431 (+)
XLOC_030160 mir100-2 non-coding downstream 244581 29990147 ~ 29990221 (+)
XLOC_030161 dre-let-7a-4 non-coding downstream 244886 29990452 ~ 29990544 (+)
XLOC_030162 dre-mir-125b-2 non-coding downstream 253196 29998762 ~ 29998847 (+)

Expression


Co-expression Network