XLOC_030154 (thy1)


Basic Information

Item Value
gene id XLOC_030154
gene name thy1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 29794058 ~ 29803293 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058960
ATCTCTGCCTTCCTGAAGGGATCACTACTGAGGGTATTGTGTCTATAACGCAACATCTCTAGCATTCTTGAGCAAAGAAGGATAAGGTTTTGCTGTGCACCGTGATCAGGATGTTCTACACCGCCTTTGCCACTCTCTTTTTACTTGgtgttgtTACTGCCCAGACATCCCTTAGGATTACATCCTGCTTGACTAAAGACCAAAACCTTCAAATGTCCTGCACCTTCACTCCAGCTCCAGACACCAAGCTCTCAAAAACATGCTACTACATGACTGACAATAAATTGATTGGCAGTACCAACAGCAGCAGCACACCAGACAGCACGTTCAGGAACCGTGCCAATGTCACCATTACTGATAACAAGTGTGACCTGTATTTGAAGGGTTTACCAGATAGCAAACCTGCAAACTACACTTGCTTTATCAGACAGACTGCCGCACCGGTGTCAATCATTCAAACTGTGGACAAGAGTAAGCTTCAGACCTGTTCAGCGTGGAGTGTTTTGCAACACAGTGGAGTAGCGTTCCTGTTGGCCTTCCTCACTTTCCCACTGTTGTCAGAGCTTCTGTGAGCATGAATTGGATCTCCTGAAATAACTCTACTCCCACAAAACTTATTCTCAATCCTCTATCTTGCAGAAGTTTCATATAATTCTGAAATCCAAAGTCTTCTGACtgttttaatttgtgtgtgtacacTGGTTCAGGTTGTGCTGATGTCAAACACTGTTATATCATGCATGTCCTTTTTAAATAACATGTGCTGTTGTAAATGTGAACCAAATGCTTGGCATTGTTTTAATTattctgaaataaaatattattgtactcCCTA
>TCONS_00058961
GGATCACTACTGAGGGTATTGTGTCTATAACGCAACATCTCTAGCATTCTTGAGCAAAGAAGGATAAGAGCAAAGTGCATTATTTGGGCCATGTGATTTCAGAAGGAGGGGTGTCACCAGACCCAGGGAAGTTGCAAGCCGTGGAGACATGGGTGGCTCCTCAGAACATTACCCAGCTTCGGGCCTTTTTGGGCCTAGTGGGTTATTATAGACGTTTTATAAAAGACTTTGCAAAGATTGCAGCACCACTGAATTCAATGTTATGGGGGACATCGAAACGACGAACTCAACCAGCTGCAGGTAAAGCAGAGCGTTGGGCATGGGGGGAGATGCAAGAAAGCGCCTTCAAGAAATTAAAGGAGAGCCTCCTGCAAGCACCCCTATTAGCATATGCTGATTTCCAGCTGCCATTTGTGCTGTATACGGATGCCTGTCAGACGGGTTTGGGAGCAGTACTTGCTCAGGTTCAAGAAGGGAAGGAGAGAGTAATTGCTTATGCAAGCAGAAGCCTACGCCCTACAGAGAGGAACGATAAAAACTATAGCTCATTTAAATTAGAACTGCTGGCTTTAAAATGGGCTATAGCGGAAAAGTTCAGGGACTATCTTGCTGTGTCTCCCTTTACTGTGTTCACAGATAATAATCCGCTGGCTCACCTGAATACGGCTACGCTGGGGGCAGTGGAGCAACGATGGATGGCTCAATTGGCTGGATTTCAGTTTGATGTGCGCTATAGACCAGGACGGACGAATGGAAACGCTGATGCCCTCTCGAGATGGCCTGGGAAAGAGACAGATGGCCAGTCTATAGAGGATGAAGCAGTGCCATGTGGTGAGCCGGGATATGTACCATCT

Function

symbol description
thy1 Predicted to enable integrin binding activity. Predicted to act upstream of or within cell adhesion and regulation of cell migration. Is expressed in eye. Orthologous to human THY1 (Thy-1 cell surface antigen).

GO:

id name namespace
GO:0030334 regulation of cell migration biological_process
GO:0007155 cell adhesion biological_process
GO:0005178 integrin binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko00670 One carbon pool by folate
ko04670 Leukocyte transendothelial migration
ko04147 Exosome
ko04090 CD molecules
ko00537 Glycosylphosphatidylinositol (GPI)-anchored proteins

ZFIN:

id description
ZDB-GENE-030131-8561 Predicted to enable integrin binding activity. Predicted to act upstream of or within cell adhesion and regulation of cell migration. Is expressed in eye. Orthologous to human THY1 (Thy-1 cell surface antigen).

Ensembl:

ensembl_id ENSDARG00000035018

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058960 False 835 mRNA 0.42 4 29794058 29803293
TCONS_00058961 True 854 processed_transcript 0.48 2 29794076 29799058

Neighbor

gene id symbol gene type direction distance location
XLOC_030153 NA coding upstream 1434 29784172 ~ 29792624 (+)
XLOC_030152 ddx31 coding upstream 48492 29714786 ~ 29745566 (+)
XLOC_030151 tsc1a coding upstream 82110 29652198 ~ 29711948 (+)
XLOC_030150 NA coding upstream 228233 29560059 ~ 29565825 (+)
XLOC_030149 NA coding upstream 550898 29241794 ~ 29243160 (+)
XLOC_030155 usf1l coding downstream 87 29803380 ~ 29817848 (+)
XLOC_030156 f11r.2 coding downstream 16973 29820266 ~ 29825846 (+)
XLOC_030157 f11r.1 coding downstream 27902 29831195 ~ 29848772 (+)
XLOC_030158 ubash3ba coding downstream 48140 29851433 ~ 29896768 (+)
XLOC_030159 NA coding downstream 98860 29902153 ~ 29988431 (+)
XLOC_030148 CT956057.3 non-coding upstream 579412 29214530 ~ 29214646 (+)
XLOC_030145 NA non-coding upstream 875097 28916519 ~ 28918961 (+)
XLOC_030160 mir100-2 non-coding downstream 186854 29990147 ~ 29990221 (+)
XLOC_030161 dre-let-7a-4 non-coding downstream 187159 29990452 ~ 29990544 (+)
XLOC_030162 dre-mir-125b-2 non-coding downstream 195469 29998762 ~ 29998847 (+)
XLOC_030164 BX897688.1 non-coding downstream 363163 30166456 ~ 30166572 (+)

Expression


Co-expression Network