LOC118938495


Basic Information

Item Value
gene id LOC118938495
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 802023 ~ 810582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942534.1
ATGAGCTCCCTAAACTACTCTCCTCCTGTTAAAGAAGatgaggtctgctggacggagaaagagggTCTGTGtgtcacattggaggaagaagaggaggttggtgatctgtttaacACCAgagagagacgggactaccgtggatcctctggggagcctcaacaaccttGTGATGCTGacaaggcagagaagagtctctctaGATCAGAACACCTCAAAAAACACCTGCAGAGATCCACAGGGAAGAgaactcactgctgctctgactgtgggaagagtttcacctcatcaggcattaaaattcatcagcgagtccacacaggagagaaaccttatagctgtaatcaatgtgggaagagttttgttcaatCTGGCTCTCTGACTTTACACcagataacacacacaggagagaaaccttatagctgtgatcaatgcgggaagagttttgttcaatCTGGCCAGCTGActttacaccagagaacacacacaggagataaaccttatagctgtgatcaatgtgggaataGTTTTACTGCATCTAGCTATCTGacttcacaccagagaacacacacaggagagaaaccttttagctgtgctcaatgtgggaagagttttactgcGTCTAGCTCTCGGacttcacaccagagaacacacacaggagagaaaccttatagctgtgctcaatgtgggaagagttttactacatctagctatCTGACtccacaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgggaagaattTTTCTACATCTTGCTATCTGacttcacaccagagaacacacacaggagagaaaccttatagctgtaatcaatgtgggaagagttttactagaTCTGGCTATCTGActttacaccagagaacacacacataagATAAATCCTTACAGCtgtgctcaatgtgggaagagttttactgaGTCTAGCACTGACTAATCACcatagaacacacacaggagagaaatcttatagctgtgaccAGAGTTAATCTGGTAAAATatcagaaaatacatacatgGAGTTGTTTTATGATATCAATGAATTAATGTCACAATGTGGtatgttttaacattgtattaGGAATATTTTAATAGTCTCAATGTAGAAGCCTAAacgttttccccctcatcaattgatttcaacatgatatgGATTTTAGGCTCAGGGgaaaaatccaggctctgaaatGGAAGAGTACTAATTTATGTGATTTAACAAAAAAAGAGTTGTGTTACACTTACCACGTTGGcgacccacttgaatcaaaatgtagctagctgttttctacaaattgtcctctaaccagggatgtacacattactcccagattccgtgtggtttttgagctgttagttgtgcgctgccctaagggactcccaatcactgcctgttatgatacagcctggatttgaaccagggtctgtagtgacgcctccagcgagatgcagtgccttagaccgctgcgccgctCCTGTGATAAAAGCGTGGGATTCTGGGTAATTCACAGCAGATTTATGGAGAACTTGAAAATTGAGTGGTTCTGGGATAGAAATGTATAAAATTGACATTACATCATAAAATCCACGTTTTAAATCACACATTAGCAATTTATGTTTTAGTAACTACTGTTGTTGGTTTGGCGTCAAGTCAGCCTCTTTATATGTTATTTGCCAAATCTCTGTTTTCCATGTGGGTTCTATGCTAAAGATCCCTCTTTCAAGTTGGTATCTAACTGGAAAATGCATCTTCTTTTAGGAGTGCTATTTGTACCCTGTTCACTACTGATCGTTCATCCACACtgtgggggcggcagggtagcctagtggttagagcattggactagtaaccgaaaggttgcaagttcaaatctccgagctgacaagggtcATTTATGACAAAAGTATAAAGTATATGTTTTACAAACTCATGAACACCAGCCAGTTTATCAGCCCGGTTTTGTTAGTTTAGGTGTATTATACTTCTTCGCCACCTGAGGGGGACATTGAGTAATTTTCCATGTCAATTTGATATATTTTGATACTAAAATGGATGACGCGATATTCTGATGTTGTGAATATGAGACACATGGAAACAATTGATTCATTTATAATAGTAAATTAGGAATTAGTAGGAATTGTTAaatccactatacgatcacaAT
>TU1292892
taatgatagctagctagctagctaacatccacGACCATGAGCTCCCTAAACTACTCTCCTCCTGTTAAAGAAGatgaggtctgctggacggagaaagagggTCTGTGGCAGAACATTgttgtgaaagaggaggaggatgttacagtaaaacaaGTAGAAGGTGAGGctgtttcagtgaaagaagaggaagacgtttcagtgaaagaagagaaagacgtttcagtgaaagaagaggaagacacgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggatgagaaggaggagggggagattactgtcacattggaggaagaagaggaggttggtgatctgtttaacACCAgagagagacgggactaccgtggatcctctggggagcctcaacaaccttGTGATGCTGacaaggcagagaagagtctctctaGATCAGAACACCTCAAAAAACACCTGCAGAGATCCACAGGGAAGAgaactcactgctgctctgactgtgggaagagtttcacctcatcaggc

Function

NR:

description
zinc finger and SCAN domain-containing protein 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942534.1 False 2195 mRNA 0.41 3 802059 810582
TU1292892 True 534 TUCP 0.47 3 802023 808678

Neighbor

gene id symbol gene type direction distance location
LOC118938115 NA coding upstream 31403 761228 ~ 770656 (+)
LOC118938129 NA coding upstream 44543 755426 ~ 757516 (+)
LOC118938494 NA coding upstream 46639 748121 ~ 755420 (+)
LOC118938493 NA coding upstream 57530 735179 ~ 744529 (+)
LOC118938131 LOC106595271 coding upstream 70338 718798 ~ 731721 (+)
LOC118938138 NA coding downstream 10405 820987 ~ 824638 (+)
LOC118938496 NA coding downstream 13931 824513 ~ 826042 (+)
LOC118938130 NA coding downstream 19481 830063 ~ 837892 (+)
LOC118938137 NA coding downstream 55587 866169 ~ 869178 (+)
LOC118938141 NA coding downstream 62526 873108 ~ 874247 (+)
G1135254 NA non-coding upstream 11505 789727 ~ 790554 (+)
G1135127 NA non-coding upstream 33848 719114 ~ 768211 (+)
G1135237 NA non-coding upstream 88732 711926 ~ 713327 (+)
G1135235 NA non-coding upstream 97874 703831 ~ 704185 (+)
G1135145 NA non-coding downstream 4622 815204 ~ 984854 (+)
G1135133 NA non-coding downstream 8681 819263 ~ 932242 (+)
G1135265 LOC106586052 non-coding downstream 29476 839169 ~ 852157 (+)
G1135271 LOC106586052 non-coding downstream 38229 848811 ~ 854578 (+)
G1135226 NA other upstream 106649 694629 ~ 695410 (+)
LOC110515442 LOC106593022 other upstream 575449 215012 ~ 231242 (+)
G1135108 NA other downstream 65070 875652 ~ 1318383 (+)
G1135135 NA other downstream 491657 1302239 ~ 1305371 (+)
G1135355 NA other downstream 571856 1382438 ~ 1385803 (+)
LOC118938396 LOC106595654 other downstream 812518 1623073 ~ 1627806 (+)

Expression

LOC118938495 Expression in all Baseline Samples

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LOC118938495 Expression in each Bioproject

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LOC118938495 Expression in each Sample
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Co-expression Network