XLOC_030157 (f11r.1)


Basic Information

Item Value
gene id XLOC_030157
gene name f11r.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 29831195 ~ 29848772 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058970
GCAGACGATCCAACCAATCACACACGGAACAGgCATACATGGTTTTCAAGTTACTGTTACTTCTCCAGTAAAAGTGAAAGAGAATGAGGGAGTTGACTTGCAATGTTCCTACACTTCTGACTTTGGAGCAACACCCAGAGTAGAATGGAAGTTCAAGGATCTCAAAGGCTCTCAGACATTAGTCTACTTTGATGGCAAGCCAACTGGTCAATATACAGGCCGTGTCACCATGTACGATAAAGGACTCCGATTTAACAAAGTGACACGAGCAGACACTGGAGACTATGACTGTGAGGTGTCTGGAAGTGGTGGATATGGAGAGAATACCATTAAACTCACAGTACTTGTTCCTCCCGCCAAGCCCGTATCCAGAATACCTTCCTCTGTCACAACAAGCAGTAATGTCCGGCTGACTTGCTTTGACCCAGTTGGCTCTCCTCCATCTACCTACAAGTGGTACAAAGACAACACCCCCCTCCCTGAGGACCCAACCAAATTCCCCGCTTTTAAGAACCTTACTTACAAAATGAATGTTTTCAATGGAAATTTGGAGTTCCCGAGTGTGTCTAAGATGGACACTGGCTCATATTTCTGTGAGGCCAGTAATGGAGAAGGTGTCCCTCAGCGTGGTGATGAAGTGAAGATGGAAGTCCGTGATCTGAATGTTGGAGGCATTGTTGCAGGGGTTATTGTGGCATTGCTGGCAGTAGGTTTGCTGCTCTTTGGTCTCTGGTATGCCAGCAAAAAGGGATATCTGCCAAAATTATCTGAAACAAAACAGAAACCACAAGCTGTTTATACACAGCCTCAGACAGATGATGTGGATGAGGCTAACGTAAGTACAACAGA
>TCONS_00058971
AGTATCGCTCAGAAGGGCGTTAGTTTCAGCCTTCCTTCTTATCTGGGCTCAGCTTCGTGAGTGCATAGCAAATACACGGCTACTTCAAAGTTCGAGAAAACATTACAATCAAACGGGGATTTGTTTTTTCCTATAAGGAGACTTTTTCTGGAGAACTTTCGTATCATTTTGGAGTGAATATGTTGACCTTCGCCTTTGTGTGCTTCTCACTCTTCGTCACAGgCATACATGGTTTTCAAGTTACTGTTACTTCTCCAGTAAAAGTGAAAGAGAATGAGGGAGTTGACTTGCAATGTTCCTACACTTCTGACTTTGGAGCAACACCCAGAGTAGAATGGAAGTTCAAGGATCTCAAAGGCTCTCAGACATTAGTCTACTTTGATGGCAAGCCAACTGGTCAATATACAGGCCGTGTCACCATGTACGATAAAGGACTCCGATTTAACAAAGTGACACGAGCAGACACTGGAGACTATGACTGTGAGGTGTCTGGAAGTGGTGGATATGGAGAGAATACCATTAAACTCACAGTACTTGTTCCTCCCGCCAAGCCCGTATCCAGAATACCTTCCTCTGTCACAACAAGCAGTAATGTCCGGCTGACTTGCTTTGACCCAGTTGGCTCTCCTCCATCTACCTACAAGTGGTACAAAGACAACACCCCCCTCCCTGAGGACCCAACCAAATTCCCCGCTTTTAAGAACCTTACTTACAAAATGAATGTTTTCAATGGAAATTTGGAGTTCCCGAGTGTGTCTAAGATGGACACTGGCTCATATTTCTGTGAGGCCAGTAATGGAGAAGGTGTCCCTCAGCGTGGTGATGAAGTGAAGATGGAAGTCCGTGATCTGAATGTTGGAGGCATTGTTGCAGGGGTTATTGTGGCATTGCTGGCAGTAGGTTTGCTGCTCTTTGGTCTCTGGTATGCCAGCAAAAAGGGATATCTGCCAAAATTATCTGAAACAAAACAGAAACCACAAGCTGTTTATACACAGCCTCAGACAGATGATGTGGATGAGGCTAACGGATTCAGACAGAAATCATCTTTTGTGGTGTAGCCTGTGCTTATCTGAATGAAATTCTGATTGTTgcctagataaaaaaaaaaacgtctgcaTAGGTTCAAGCACATCAGgatttgtgtgtatgtgaaagGTGTGACTTAGATCATAGAAATGTGCAGAAAGCTTTAAAACATGCCAGGCAGATTCATTTTGCATATTGGCTTTTAGAAATGTAAAATCTGTGCATCTCTCTTTTGCAGAAATGAttagaaatgtaatttattgaggTACACGAGTAATTTGTGAGTGGAAAACAaatttaatatggtttaatattGATCCTTTTGTTAATGTAATTTACTCTGATTTGTTGCATTGGTATGGATTAAAGTATCCATTTAATGTGATTCTGCACTATGAGATAAACTTTTTGTGTTCTCCATTCAGGTAAAACAATGCCCTTTGCCCTTCATATAAACATTTGCTGTACATTGCAGTCATGATATGTTGTTCTTTTACTTCTGTTACTTTTTATGATGGTTTGCTccgtgtttttgtgttttatacatATTTCATGAAATGTAAATATCGCTTTCAaacttttattgcattttataggATTTTAAATCAAGCTTCATTGACCTCTCTGACTTGTTCACATCTTCCCTCTTATTTTTCTTGTTTGAAGTTTTAATGTCTGACTTCCAATTCTTCTGAATTCTTCCAATAAATGAAACATGCTAAA
>TCONS_00058972
GGAGTGAATATGTTGACCTTCGCCTTTGTGTGCTTCTCACTCTTCGTCACAGgCATACATGGTTTTCAAGTTACTGTTACTTCTCCAGTAAAAGTGAAAGAGAATGAGGGAGTTGACTTGCAATGTTCCTACACTTCTGACTTTGGAGCAACACCCAGAGTAGAATGGAAGTTCAAGGATCTCAAAGGCTCTCAGACATTAGTCTACTTTGATGGCAAGCCAACTGGTCAATATACAGGCCGTGTCACCATGTACGATAAAGGACTCCGATTTAACAAAGTGACACGAGCAGACACTGGAGACTATGACTGTGAGGTGTCTGGAAGTGGTGGATATGGAGAGAATACCATTAAACTCACAGTACTTGTTCCTCCCGCCAAGCCCGTATCCAGAATACCTTCCTCTGTCACAACAAGCAGTAATGTCCGGCTGACTTGCTTTGACCCAGTTGGCTCTCCTCCATCTACCTACAAGTGGTACAAAGACAACACCCCCCTCCCTGAGGACCCAACCAAATTCCCCGCTTTTAAGAACCTTACTTACAAAATGAATGTTTTCAATGGAAATTTGGAGTTCCCGAGTGTGTCTAAGATGGACACTGGCTCATATTTCTGTGAGGCCAGTAATGGAGAAGGTGTCCCTCAGCGTGGTGATGAAGTGAAGATGGAAGTCCCCTGGATCATGACAATCACACCAGCACTGATGCAGATGCCCATGAGAATCTAAAGTGAGGTTGAACAGGGTTGGAGATGAACTTAAATACT

Function

symbol description
f11r.1 Enables protein heterodimerization activity. Acts upstream of or within hematopoietic or lymphoid organ development; posterior lateral line development; and regulation of hematopoietic stem cell differentiation. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction. Is expressed in several structures, including EVL; digestive system; integument; pronephros; and sensory system. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human F11R (F11 receptor).

GO:

id name namespace
GO:1902036 regulation of hematopoietic stem cell differentiation biological_process
GO:0050892 intestinal absorption biological_process
GO:0090557 establishment of endothelial intestinal barrier biological_process
GO:0090559 regulation of membrane permeability biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:0048916 posterior lateral line development biological_process
GO:0007155 cell adhesion biological_process
GO:0005923 bicellular tight junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2416 Enables protein heterodimerization activity. Acts upstream of or within hematopoietic or lymphoid organ development; posterior lateral line development; and regulation of hematopoietic stem cell differentiation. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction. Is expressed in several structures, including EVL; digestive system; integument; pronephros; and sensory system. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human F11R (F11 receptor).

Ensembl:

ensembl_id ENSDARG00000017320

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058970 False 849 processed_transcript 0.46 9 29831195 29847899
TCONS_00058971 False 1749 mRNA 0.39 10 29831235 29848772
TCONS_00058972 True 764 processed_transcript 0.46 7 29831405 29843117

Neighbor

gene id symbol gene type direction distance location
XLOC_030156 f11r.2 coding upstream 5349 29820266 ~ 29825846 (+)
XLOC_030155 usf1l coding upstream 13347 29803380 ~ 29817848 (+)
XLOC_030154 thy1 coding upstream 27902 29794058 ~ 29803293 (+)
XLOC_030153 NA coding upstream 38571 29784172 ~ 29792624 (+)
XLOC_030152 ddx31 coding upstream 85629 29714786 ~ 29745566 (+)
XLOC_030158 ubash3ba coding downstream 2661 29851433 ~ 29896768 (+)
XLOC_030159 NA coding downstream 53381 29902153 ~ 29988431 (+)
XLOC_030160 mir100-2 coding downstream 141375 29990147 ~ 29990221 (+)
XLOC_030161 dre-let-7a-4 coding downstream 141680 29990452 ~ 29990544 (+)
XLOC_030162 dre-mir-125b-2 coding downstream 149990 29998762 ~ 29998847 (+)
XLOC_030150 NA non-coding upstream 265370 29560059 ~ 29565825 (+)
XLOC_030149 NA non-coding upstream 588035 29241794 ~ 29243160 (+)
XLOC_030148 CT956057.3 non-coding upstream 616549 29214530 ~ 29214646 (+)
XLOC_030145 NA non-coding upstream 912234 28916519 ~ 28918961 (+)
XLOC_030164 BX897688.1 non-coding downstream 317684 30166456 ~ 30166572 (+)

Expression


Co-expression Network