LOC110487338


Basic Information

Item Value
gene id LOC110487338
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 1719750 ~ 1734106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559266.2
atgGgtggaactgtgagaggaggagaagagaagaaaggatcagatttgactcatcaaagagaaagaccagactcagaggaaccagagccagggacgtccaaaccAACAAGACGACACTTgtgttcccactgtggaaagggttgtaACCTCTTGTGggagctgaaacaacatgagagaatacacacaggggagaagcctttccactgctcccagtgtggaaaaagTTTTGGCCATAAAGGAACCCTTAAcaaacacgagagaatacacacaggggagaagcctcaCCACTGCttccagtgtggaaagtgttttaaCCTGTTAGGGTctctgaaacgacatgagagatTACACACAGggcagaagccttaccactgttccCAATGTGGAAAGGGTTGTAACCTCCTATGggagctgaaacaacatgagagaacacacacaggggagaagccttaccactgctcgcagtgtggaaagagttttaaccagaAAGGACACATGAAAgcccatgagagaatacacacaggggagaaaccttaccactgctcccagtgtggaaagagttttagccgGTTAAGGAACCTGAAAGTTCATGAgataatacacacaggggagaagccttaccagtgctcccagtgtggcaagtgttttaaCCAGTTAGGAGCCATGAaacaacacgagagaatacacacaggggagaagccttaccactgctcccagtgtggaaagcgttTCAACTGGTCAGGGGATCTGAAAAAACATGAGAgattacacacaggggagaagctttACCACTGTTCCCAATGTGGAAAGGGTTGTAACTTATTATGGGatctgaaacaacatgagagaacacacacaggggagaagccttaccactgctcacagtgtggaaagagttttaaacTGAAAGGACACCTGAAAGCTCACCAGAaaattcacacaggggagaagccttaccactgctccctgtgtggaaagtgtttcagccGGTCAGGTGATCTGAAgaaacatgagagaatacacacaggggagaagcctaaCCACTCCTCacagggtgcaaagcttttgcccATTGAGAAAGCATGAAAGAACACATGAGACTGCACACAGAGGAGAAGGCTTACAAAAGCTCAGACTGTGGGAAAACATATTACTCATAACATATTACACTTAAATGTCAttagagaatccacacaggagagagaaattacttctcttagcgtgtatattgatatttcacatcacattgacttaacattcatcagagaacatacacagtgctcccattgtcttatattgttgactgaTAATGTGTTGACCTgcttttac

Function

NR:

description
gastrula zinc finger protein XlCGF17.1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559266.2 True 1329 mRNA 0.45 3 1719750 1734106

Neighbor

gene id symbol gene type direction distance location
trnai-uau-3 NA coding downstream 9746 1709911 ~ 1710004 (-)
LOC110487328 NA coding downstream 48294 1668582 ~ 1671456 (-)
LOC110506157 LOC106593263 coding downstream 154641 1562605 ~ 1565409 (-)
LOC110500808 LOC106592918 coding downstream 187821 1524636 ~ 1531929 (-)
LOC110500803 NA coding downstream 218786 1496985 ~ 1500964 (-)
LOC118938418 NA coding upstream 6392 1740498 ~ 1742112 (-)
LOC110487301 LOC106595892 coding upstream 228436 1938873 ~ 1996032 (-)
LOC118938506 LOC106594488 coding upstream 268443 2002549 ~ 2010728 (-)
LOC110515515 LOC106563994 coding upstream 296702 2030808 ~ 2096917 (-)
LOC118938422 LOC106594299 coding upstream 369128 2103128 ~ 2104021 (-)
G1136258 NA non-coding downstream 77889 1641245 ~ 1641861 (-)
G1136247 NA non-coding downstream 91949 1627314 ~ 1627801 (-)
G1136225 NA non-coding downstream 108596 1576973 ~ 1611154 (-)
G1136222 NA non-coding downstream 109315 1596957 ~ 1610435 (-)
G1136221 NA non-coding downstream 142877 1569950 ~ 1576873 (-)
G1136301 NA non-coding upstream 26983 1761089 ~ 1776964 (-)
G1136311 NA non-coding upstream 80955 1815061 ~ 1842187 (-)
G1136318 NA non-coding upstream 82564 1816670 ~ 1817370 (-)
G1136321 LOC106607538 non-coding upstream 88883 1822989 ~ 1836548 (-)
G1136332 NA non-coding upstream 108113 1842219 ~ 1859230 (-)
LOC118938134 NA other downstream 264445 1454762 ~ 1458002 (-)
G1136112 NA other downstream 380148 1338663 ~ 1339602 (-)
G1136432 LOC106595012 other upstream 395612 2129718 ~ 2170439 (-)
G1136447 NA other upstream 437544 2171650 ~ 2187711 (-)
G1136455 NA other upstream 453334 2187440 ~ 2245318 (-)

Expression


Co-expression Network