LOC118938506 (LOC106594488)


Basic Information

Item Value
gene id LOC118938506
gene name LOC106594488
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 2002549 ~ 2010728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942546.1
GGATGCTGTTCCACTGTAAAGACACACAGAGTGTTCAACTGGAGAGTGGACCCTCACCGGGATGCTGTTACACTGTAAAGACACACAGAGTGTTAAACTGGAGAGTGGACCCTCACCGGGATGCTGTTACACTGTAAAGACACACAGAGTGTTAAACTGGAGAGTGGACCCTCACCGGGATGAGTTTTTAGCTCTTTCATGACACATCAAtccctaaaaatatatatatatatatatatatatttaaaccaaTAATGATTCATGCAAGGAAGTGGACCTCTCCAAATCAATAATGATTAATATACAGGAAGTGGACCTCTCCAAATCAATAATGATTAATATACAGGAAGTGGACCTCTCCAAATCAATAATGATTAATATACAGGAAGTGGACCTCTCCAAATCAATAATGATTAATATACAGGAAGTGGACCTCTCCAAACCAATCATGATTAATATACAGGAAGTGGACCTCTCCAAACCAATCATGATGAATATACAGGAAGTGGACCTCTCCAAACCAATCATGATTAATATACAGGAAGTGGACCTCTCCAAACCAATCATGATGAATATACAGGAAGTGGACCTCTCCAAGGCACCTCCCACTCTGGACTTAGAGCTTCACATTCTGTCTCTGAGTGAGGATGACGGAGTCACTCATTTCCATCCGTCCCTCTAAAGAAGAGGATGCCTGGGACTTTTAACTAATAAACCGTAAGAAAGAGGAGATGAAGAAGGATTAAAAATTGTTGTGAAACTAGAAACTCCCACTGACGCTGTTATGAAGCCTGGACTATAAACGAAGTACAGAAAGCCTTTAATGAAGGCGCGCAGCGGACCGTAACTTCCTTCGCCGTGATGAAGTTGTGTAACCGGGGAGCGCTGATGCTGGTCACCACGGCGTTATCCTTCATAGCGTTCAGCCTGATGACCATCGCAGTGGGAACGGACTACTGGCTGTACTCCCGGGGCGTCTGCCGGTCCAAGACGTCGCTCCATGACAACGAGACCATCCGCAAGAACGAGGTGGTGATGACTCACTCCGGGCTCTGGCGCACCTGTTGTCTCGAAGggACGTTCACAGGGGTGTGTAAAGAAATTGATTATTTCCTCGAGGATGCAGACTATGAGCAGGATGCTGCAGAATACCTACtgaGAGTCTGTGTGGCCGGCAGCGAGTTCTACAAGACACAACACAACGTCATGCTCAGCGCTGGCATACTGTTCGTCTCCGCAggacTCAGTAACATCATTGGCATCATCGTCTACATCTCGGCTAACTCTGGTGACCCGGGTCAGAGCGACAGTAAGAAGAGTTACTCCTATGGCTGGTCTTTCTACTTCGGGGCGTTGTCCTTCATCTTGGCTGAGATGGTGGGCGTTCTGACAGTACACGCCTTCATAGAGCGCCACCGAAAGCTCCGGACCCGCGGCCGCCGCTCCTTCACCAAACACGCTCTGTTCCGCTCCGCGTCCTACTACAGCCGCTACAACCGCTACAGACGCCGCTCCAGTTACCGCGGCAACGTGGACTACCGTCACTCGCTCTCGTCGGCGGGGCAACTGCGACCTCGTGACCACTCGCCGTTGCCGGTGGCCCTGTCCGTGTCAAAGGTTGTCGCCGCGGGGTCGCACAAACTAACGCCGCCCGACAACAAGATGGCAGCCgctgcaggaggaggaggaggaggaggaggaggaggggtggatgtTGCGAGGAGCGTTTTCCTGTTGCCACTGACAAGCAAGCCCAACAACAAGGACATGTTGCCTAGCAATGCTGCTAACAGGAAGACAACAcctgtctga

Function

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-3 subunit-like

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942546.1 True 1812 mRNA 0.50 4 2002549 2010728

Neighbor

gene id symbol gene type direction distance location
LOC110487301 LOC106595892 coding downstream 6517 1938873 ~ 1996032 (-)
LOC118938418 NA coding downstream 260437 1740498 ~ 1742112 (-)
LOC110487338 NA coding downstream 268443 1719750 ~ 1734106 (-)
trnai-uau-3 NA coding downstream 292545 1709911 ~ 1710004 (-)
LOC110487328 NA coding downstream 331093 1668582 ~ 1671456 (-)
LOC110515515 LOC106563994 coding upstream 20080 2030808 ~ 2096917 (-)
LOC118938422 LOC106594299 coding upstream 92506 2103128 ~ 2104021 (-)
LOC118938405 NA coding upstream 118204 2128932 ~ 2141322 (-)
LOC118938409 NA coding upstream 154269 2164997 ~ 2170791 (-)
LOC110513814 LOC106564064 coding upstream 183394 2194122 ~ 2243480 (-)
G1136398 NA non-coding downstream 85 2000877 ~ 2002464 (-)
G1136396 NA non-coding downstream 3177 1998885 ~ 1999372 (-)
G1136395 NA non-coding downstream 5285 1996925 ~ 1997264 (-)
G1136368 NA non-coding downstream 100987 1901122 ~ 1901562 (-)
G1136416 NA non-coding upstream 79759 2090487 ~ 2091614 (-)
G1136417 NA non-coding upstream 82998 2093726 ~ 2095171 (-)
G1136419 NA non-coding upstream 88797 2099525 ~ 2100002 (-)
LOC110506157 LOC106593263 other downstream 437140 1562605 ~ 1565409 (-)
LOC110500808 LOC106592918 other downstream 471041 1524636 ~ 1531929 (-)
LOC118938134 NA other downstream 547244 1454762 ~ 1458002 (-)
G1136432 LOC106595012 other upstream 118990 2129718 ~ 2170439 (-)
G1136447 NA other upstream 160922 2171650 ~ 2187711 (-)
G1136455 NA other upstream 176712 2187440 ~ 2245318 (-)
LOC118938509 LOC106564044 other upstream 497535 2507219 ~ 2518648 (-)

Expression


Co-expression Network