LOC110515515 (LOC106563994)


Basic Information

Item Value
gene id LOC110515515
gene name LOC106563994
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 2030808 ~ 2096917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942242.1
gtgtgtgtgtgtatttctctctaGATTGTATGATGAACATCCACAACCGGTGTGTGGCCAACGTTCCCAGTCTGTGTGGAACGGACcacactgagaggagaggacgCATCCAGATCACAGCAGATATCAAGGACAACAAACTCACCGTCTacaTCCAGGAGGCTTGTAACCTGGTCCCCATGGACCCTAACGGTCTGTCCGACCCCTACGTGAAGCTCAAACTCATCCCCGACCCCAAGAGTGACACCAAGCAGAAGACCAAGACCATCAAGTGTAACCTGAACCCCACCTGGAATGAGAGCTTCACATTtcctCTGAAGGACTCTGATAAGGACCGGCGTCTGTCGGTGGAGATCTGGGACTGGGATCTGACCAGCAGGAACGACTTCATGGGAGCGCTCTCATTCGGCGTCTCAGAGCTCCAGAAACAAGGAGTGGATGGATGGTTTAAATTGTTGTCCCAGGAGGAGGGAGAATACTTTAATGTTCCTGTCCAACCAGACGGAGAAGACGGCAACGAGGAACTACGACAAAAGTTTGAGAGGGCTAAGATTGGTCCCGGGAAGAACACAGACGGCTCCTCCTCTAACTCCACCTCTAAGTACGATAGCAACGGTAACCAGGACCGCGTCAAACTGACAGACTTCAACTTCATTATGGTGTTGGGAAAGGGCAGCTTCGGGAAGGTGATGTTAGCAGAGCGTAAAGGAGCAGACGAGCTGTACGCCGTAAAGATCCTGAAGAAGGACGTGGTCATTCAGGATGATGATGTGGAGTGCACCATGGTGGAGAAGAGGGTCCTGGCCCTGTCAGGGAAACCTCCCTTCCTCACACAGCTCCACTCCTGCTTCCAGACCAtggacagGTTATATTTTGTGATGGAGTATATCAACGGAGGAGACCTCATGTATCAGATCCAGCAGGTCGGCAAGTTCAAGGAACCCCACGCTGTtttctATGCTGCAGAGATCTCCAtcggcctcctcttcctccattccaAAGGCATCGTTTACCGGGATCTGAAGCTGGACAACGTGATGCTGGATGCAGAAGGCCACATTAAGATCGCTGACTTTGGGATGTGCAAAGAGAACATGTTAGACGGTGTCACCACCAAGACCTTCTGTGGGACCCCAGACTACATCGCTCCTGAGatCATAGCGTACCAGCCCTATGGGAAGTCCGTGGACTGGTGGGCCTTTGGAGTTCTGCTCTACGAGATGCTGGCTGgacagCCTCCGTTCGATGGTGAGGACGAGGATGAGTTGTTCCAGTCCATCATGGAGCATCACGTCTCCTACCCCAAGTCCATGTCCAAGGAGGCTGTCGCCATCTGCAAAGGGTTGATGACCAAGCACCCAGGGAAGCGTCTGGGCTGTGGTccggagggggagagggatataAAGGAACACGCTTTCTTCCGTTACATGGACTGGGACAAACTGGAGAACAAGGAAGTCCAGCCGCCCTTCAAACCCAAAGCTAAGAACCGTCGGGACACGGGGAACTTTGATAAAGAGTTCACTAAGATGGCAGTGGAACTGACTCCTACAGACAAACTGTTCATAATGAACCTCGATCAGAACGAATTCCAGGGATTCTCCTACACCAACCCAGAGTACATCATACAGGTTTAACCCTGTAGACGATATAACACACCAACCCAGAGTACATCATACAGGTTTAACCCTGTAGATTATATAACATGATACACTCAACCCAGAGTACATCACACAGGTTTAACCCTATagattatacagtaccagtcaaaagttgggccacacctgc
>XM_036942243.1
gtgtgtgtgtgtatttctctctaGATTGTATGATGAACATCCACAACCGGTGTGTGGCCAACGTTCCCAGTCTGTGTGGAACGGACcacactgagaggagaggacgCATCCAGATCACAGCAGATATCAAGGACAACAAACTCACCGTCTacaTCCAGGAGGCTTGTAACCTGGTCCCCATGGACCCTAACGGTCTGTCCGACCCCTACGTGAAGCTCAAACTCATCCCCGACCCCAAGAGTGACACCAAGCAGAAGACCAAGACCATCAAGTGTAACCTGAACCCCACCTGGAATGAGAGCTTCACATTtcctCTGAAGGACTCTGATAAGGACCGGCGTCTGTCGGTGGAGATCTGGGACTGGGATCTGACCAGCAGGAACGACTTCATGGGAGCGCTCTCATTCGGCGTCTCAGAGCTCCAGAAACAAGGAGTGGATGGATGGTTTAAATTGTTGTCCCAGGAGGAGGGAGAATACTTTAATGTTCCTGTCCAACCAGACGGAGAAGACGGCAACGAGGAACTACGACAAAAGTTTGAGAGGGCTAAGATTGGTCCCGGGAAGAACACAGACGGCTCCTCCTCTAACTCCACCTCTAAGTACGATAGCAACGGTAACCAGGACCGCGTCAAACTGACAGACTTCAACTTCATTATGGTGTTGGGAAAGGGCAGCTTCGGGAAGGTGATGTTAGCAGAGCGTAAAGGAGCAGACGAGCTGTACGCCGTAAAGATCCTGAAGAAGGACGTGGTCATTCAGGATGATGATGTGGAGTGCACCATGGTGGAGAAGAGGGTCCTGGCCCTGTCAGGGAAACCTCCCTTCCTCACACAGCTCCACTCCTGCTTCCAGACCAtggacagGTTATATTTTGTGATGGAGTATATCAACGGAGGAGACCTCATGTATCAGATCCAGCAGGTCGGCAAGTTCAAGGAACCCCACGCTGTtttctATGCTGCAGAGATCTCCAtcggcctcctcttcctccattccaAAGGCATCGTTTACCGGGATCTGAAGCTGGACAACGTGATGCTGGATGCAGAAGGCCACATTAAGATCGCTGACTTTGGGATGTGCAAAGAGAACATGTTAGACGGTGTCACCACCAAGACCTTCTGTGGGACCCCAGACTACATCGCTCCTGAGatCATAGCGTACCAGCCCTATGGGAAGTCCGTGGACTGGTGGGCCTTTGGAGTTCTGCTCTACGAGATGCTGGCTGgacagCCTCCGTTCGATGGTGAGGACGAGGATGAGTTGTTCCAGTCCATCATGGAGCATCACGTCTCCTACCCCAAGTCCATGTCCAAGGAGGCTGTCGCCATCTGCAAAGGGTTGATGACCAAGCACCCAGGGAAGCGTCTGGGCTGTGGTccggagggggagagggatataAAGGAACACGCTTTCTTCCGTTACATGGACTGGGACAAACTGGAGAACAAGGAAGTCCAGCCGCCCTTCAAACCCAAAGCTTGCGGTCGCGACGCAGAGAACTTTGATCGTTTCTTTACACGCCACCCCCCCATCCTGACCCCCCCCGACCAGGAGGTCATCATGAACCTGGACCAGGAAGAGTTCCAGGGATTCTCATTCGTTAACCCAGAGTACCCCGACATGGACTGACCTATCACAGCTCTGCATTAGCTCTGTGATCCTGCCCCTCTTCCAGATCTCATATCATTCCATCACCAGGATATAGTTTAGGACCAAAAGGGTGTATCCCagttgtctctcctccctcttgaGCGTGCACTTGTTCACTACTCCTGAGTGGCGCGGCCGTCTGGTGGCATCTCAGTGCACGAAGCGTCACTACAGTGCCTGGTTcgaatcccaggctgtgtcacatccggccgtgattgggagtcctaagagggcggcgcacgattggcccagcgtcgtccgggttttggcctgtggggggggggggggggggtaaggtcgtcattgtaaataataatgtgttcttaactgacttgcctagttaaataaagattaaatacattttttttttatatataaacacAAATATAAAAACATGATTGGCGTTAACCTGGAGTAGAGTCTCCATTTACCACTCATTTCCTTTCAAGTGAGGAAGTGTGTACtttgggaggaaggggagagaattGGGACATAGCCGAGGCCCTACCCATATCTACTGTTCTAACCtaaacacagatctaggatcagattccccATGCCGCTAGTCTTAACTACCCATATCTACTGTTCTAACCtaaacacagatctaggatcagattccccATGCCGCTAGTCTTAACTACCCATATCTACTGTTCTAACCtaaacacagatctaggatcagattccccATGCCGCTAGTCTTAACTACCCATATCTACTGTTCTAACCtaaacacagatctaggatcagattccccATGCCGCTAGTCTTAACTACCCATATCTACTGTTCTAACCtaaacacagatctaggatcagattccccATGCCCCTAGTCTTAACTACCCATATCTACTGTTCTAACCtaaacacagatctaggatcagattccccATGCCGCTAGTCTTAACTACCCATATCTACTGTTCTAACCtaaacacagatctaggatcagattccccATGCCCCTAGTCTTAACTACCCATATCTACTGTTCTAACCtaaacacagatctaggatcagattccccATGCCCCTAGTCTTAACCTGAACCATTACGGAGATCTGACCTCTGATCAGCGGTTAAAGACAACTTCTACTGAAAACAGAACAGAAGGGGAAAAAAATGCTGAATCGATCGATTTTTCAACTAATCGATAATCAAATTGATGAGTTACATTCCCACCATCAACCCATCAAATGACCTCCCAACTGTTACTGGGATCAATATTTGACCGACTGATCGAACTGATCGACTTTCTTACTGTTTAATGATCAATCAGggtattgttgttttgtttgtattGATTTAGGGATCTCCCGTTAGGGATTTAGAACTGTTGTGAAATGTTAGCATCGTGCTATTACAACGAGGGAGGCTGAAAACACGTATCCTCCTTGGGTaccgtcaccaccaccacctcacacACCACGTTACGTTACTGTAAAACTGTGCCAAAGCAGGGTCAGAGTTCAGGGTCCAGTGTCCTCCGTTACGGGGGAGACacacggcagccattttgtgccacAGAGCCCCAAACAACCCCACACCTCGGGAATAGCATTCACTGCAACTGGAAACGCACGGACACACCAGGGCTCATCTCCAATAGTCTTGTCAACCCGGTCCAACCACACATCCTCTAGATATCGCTCTGAGACCAGGGCCCGTTCCCCATAGTGACCTGCTATTGACCAGGGAGGGCCCATTCCCTCTATAGTGACCTGCTATTGACCAGGGAGGGCCCGTTCCCCATAGTGACCTGCTATTGACCAGGGAGGGCCCATTCCCTCTATAGTGACCTGCTATTGACCAGGGAGGGCCCATTCCCTCTATAGTGACCTGCTATTGACCAGGGAGGGCCCATTCCCTCTATAGTGAcctgctattgaccagggcccattcccCATAGTGAcctgctattgaccagggcccattccctctatagtgacctgttattgaccagggcccgttcCCCATAGTGACCTGCTATTGACCAGGGAGGGCCCATTCCCTCTATAGTGACCTGCTATTGACCAGGGAGGGCCCATTCCCTCTATAGTGACCTGCTATTGACCAGGGATGGCCCATTCCCTCTATAGTGACCTGCTATAGGGCCCATTCCCTCTATAGTGACCTGCTAATAGGGCCCATTCCCTCTATAGTGACCTGCTATAGGGCCCATTCCCTCTATAGTGACCTGCTATAGGGCCCATTCCCTCTATAGTGACCTGCTATAGGGCCCATTCCCTCTATAGTGACCTGCTACAGGGCCCATTCCCTCTATAGTGACCTGCTAATAGGGCCCATTCCCTCTATAGTGACCTGCTACAGGGCCCATTCCCTCTATAGTGACCTGCTAATAGGGCCCATTCCCTCTATAGTGACCTGCTATAGGGCCCATTCCCTCTATAGTGACCTGCTATAGGGCCCATTCCCTCTATAGTGACCTGCTATAGGGCCCTGGCTcagtagaaagtagtgcacttcatagggaatagggtgtgatttcaGACGCTGTCTAGGAATTATCTGACCACTGCCAAACAGAGATGTTGTTGTTTATACTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTCGTACTGGTTTAGTTAACCAGGGTGGTTAGTTAGTAATTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTCATACTTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTAGGTTAGTTAACCAGGGTGGTTAGTTCATACTTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACTGGTTATTAGTACCGGGGGGTTGGGAAGTGTTCTGTAACTGTTTAAAGAGAGTTCTGATTATATTACCATGCAGTTAAATGTGTCAAACTGTAAAATAATGGAAATGTATTGTTTCTTTCTTGTGTCAAGAGTGactgaggatgatgaggaggaggaggatgacaatgaggataatgatgatgatgatgatgatgatagctGAATCTTGTTTTGTGTGTCCGCTGAGCTAAAGGCCTTATCTGAACTTGGGGAGTTAACTCTActgaatgatgatgatgatgatgatgatgatgatgatgatgatgatgatagctGAATCTTGTTTTGTGTGTCCGCTGAGCTAAAGGCCTTATCTGAACTTGGGGAGTTAACTCAAGCGTCTGCTGTCTTACAGTAAACGTACAGAGGTTTGTAACGATGTAGGGAGAGGGGGTGTGTCTTGTACGTGTAAATCTGTCTTCTGATTGGAAAATATAATATAACTCAACTCA
>TU1294549
ACCATCAACCCATCAAATGACCTCCCAACTGTTACTGGGATCAATATTTGACCGACTGATCGAACTGATCGACTTTCTTACTGTTTAATGATCAATCAGggtattgttgttttgtttgtattGATTTAGGGATCTCCCGTTAGGGATTTAGAACTGTTGTGAAATGTTAGCATCGTGCTATTACAACGAGGGAGGCTGAAAACACGTATCCTCCTTGGGTaccgtcaccaccaccacctcacacACCACGTTACGTTACTGTAAAACTGTGCCAAAGCAGGGTCAGAGTTCAGGGTCCAGTGTCCTCCGTTACGGGGGAGACacacggcagccattttgtgccacAGAGCCCCAAACAACCCCACACCTCGGGAATAGCATTCACTGCAACTGGAAACGCACGGACACACCAGGGCTCATCTCCAATAGTCTTGTCAACCCGGTCCAACCACACATCCTCTAGATATCGCTCTGAGACCAGGGCCCGTTCCCCATAGTGACCTGCTATTGACCAGGGAGGGCCCATTCCCTCTATAGTGACCTGCTATTGACCAGGGAGGGCCCGTTCCCCATAGTGACCTGCTATTGACCAGGGAGGGCCCATTCCCTCTATAGTGACCTGCTATTGACCAGGGAGGGCCCATTCCCTCTATAGTGACCTGCTATTGACCAGGGAGGGCCCATTCCCTCTATAGTGAcctgctattgaccagggcccattcccCATAGTGAcctgctattgaccagggcccattccctctatagtgacctgttattgaccagggcccgttcCCCATAGTGACCTGCTATTGACCAGGGAGGGCCCATTCCCTCTATAGTGACCTGCTATTGACCAGGGAGGGCCCATTCCCTCTATAGTGACCTGCTATTGACCAGGGATGGCCCATTCCCTCTATAGTGACCTGCTATAGGGCCCATTCCCTCTATAGTGACCTGCTAATAGGGCCCATTCCCTCTATAGTGACCTGCTATAGGGCCCATTCCCTCTATAGTGACCTGCTATAGGGCCCATTCCCTCTATAGTGACCTGCTATAGGGCCCATTCCCTCTATAGTGACCTGCTACAGGGCCCATTCCCTCTATAGTGACCTGCTAATAGGGCCCATTCCCTCTATAGTGACCTGCTATAGGGCCCTGGCTcagtagaaagtagtgcacttcatagggaatagggtgtgatttcaGACGCTGTCTAGGAATTATCTGACCACTGCCAAACAGAGATGTTGTTGTTTATACTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTCGTACTGGTTTAGTTAACCAGGGTGGTTAGTTAGTAATTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTCATACTTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTTGGTTAGTTAACCAGGGTGGTTAGTTAGTACTAGGTTAGTTAACTGGTTATTAGTACCGGGGGGTTGGGAAGTGTTCTGTAACTGTTTAAAGAGAGTTCTGATTATATTACCATGCAGTTAAATGTGTCAAACTGTAAAATAATGGAAATGTATTGTTTCTTTCTTGTGTCAAGAGTGactgaggatgatgaggaggaggaggatgacaatgaggataatgatgatgatgatgatgatgatagctGAATCTTGTTTTGTGTGTCCGCTGAGCTAAAGGCCTTATCTGAACTTGGGGAGTTAACTCTActgaatgatgatgatgatgatgatgatgatgatgatgatgatgatgatagctGAATCTTGTTTTGTGTGTCCGCTGAGCTAAAGGCCTTATCTGAACTTGGGGAGTTAACTCAAGCGTCTGCTGTCTTACAGTAAACGTACAGAGGTTTGTAACGATGTAGGGAGAGGGGGTGTGTCTTGTACGTGTAAATCTGTCTTCTGATTGGAAAATATAATATAACTCAACTCACCTCA
>TU1294545
TGAACATCCACAACCGGTGTGTGGCCAACGTTCCCAGTCTGTGTGGAACGGACcacactgagaggagaggacgCATCCAGATCACAGCAGATATCAAGGACAACAAACTCACCGTCTacaTCCAGGAGGCTTGTAACCTGGTCCCCATGGACCCTAACGGTCTGTCCGACCCCTACGTGAAGCTCAAACTCATCCCCGACCCCAAGAGTGACACCAAGCAGAAGACCAAGACCATCAAGTGTAACCTGAACCCCACCTGGAATGAGAGCTTCACATTtcctCTGAAGGACTCTGATAAGGACCGGCGTCTGTCGGTGGAGATCTGGGACTGGGATCTGACCAGCAGGAACGACTTCATGGGAGCGCTCTCATTCGGCGTCTCAGAGCTCCAGAAACAAGGAGTGGATGGATGGTTTAAATTGTTGTCCCAGGAGGAGGGAGAATACTTTAATGTTCCTGTCCAACCAGACGGAGAAGACGGCAACGAGGAACTACGACAAAAGTTTGAGAGGGCTAAGATTGGTCCCGGGAAGAACACAGACGGCTCCTCCTCTAACTCCACCTCTAAGTACGATAGCAACGGTAACCAGGACCGCGTCAAACTGACAGACTTCAACTTCATTATGGTGTTGGGAAAGGGCAGCTTCGGGAAGGTACGTGGTGGAGAGACTGTatggggggggacagagagactgtat
>TU1294544
TGAACATCCACAACCGGTGTGTGGCCAACGTTCCCAGTCTGTGTGGAACGGACcacactgagaggagaggacgCATCCAGATCACAGCAGATATCAAGGACAACAAACTCACCGTCTacaTCCAGGAGGCTTGTAACCTGGTCCCCATGGACCCTAACGGTCTGTCCGACCCCTACGTGAAGCTCAAACTCATCCCCGACCCCAAGAGTGACACCAAGCAGAAGACCAAGACCATCAAGTGTAACCTGAACCCCACCTGGAATGAGAGCTTCACATTtcctCTGAAGGACTCTGATAAGGACCGGCGTCTGTCGGTGGAGATCTGGGACTGGGATCTGACCAGCAGGAACGACTTCATGGGAGCGCTCTCATTCGGCGTCTCAGAGCTCCAGAAACAAGGAGTGGATGGATGGTTTAAATTGTTGTCCCAGGAGGAGGGAGAATACTTTAATGTTCCTGTCCAACCAGACGGAGAAGACGGCAACGAGGAACTACGACAAAAGTTTGAGAGGGCTAAGATTGGTCCCGGGAAGAACACAGACGGCTCCTCCTCTAACTCCACCTCTAAGTACGATAGCAACGGTAACCAGGACCGCGTCAAACTGACAGACTTCAACTTCATTATGGTGTTGGG

Function

NR:

description
PREDICTED: protein kinase C beta type-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942242.1 False 1788 mRNA 0.51 13 2030808 2096917
XM_036942243.1 False 5171 mRNA 0.48 13 2034542 2096917
TU1294549 False 2050 lncRNA 0.47 3 2034537 2036871
TU1294545 False 698 TUCP 0.53 5 2080146 2096884
TU1294544 True 634 TUCP 0.52 5 2080210 2096884

Neighbor

gene id symbol gene type direction distance location
LOC118938506 LOC106594488 coding downstream 20080 2002549 ~ 2010728 (-)
LOC110487301 LOC106595892 coding downstream 34776 1938873 ~ 1996032 (-)
LOC118938418 NA coding downstream 288696 1740498 ~ 1742112 (-)
LOC110487338 NA coding downstream 296702 1719750 ~ 1734106 (-)
trnai-uau-3 NA coding downstream 320804 1709911 ~ 1710004 (-)
LOC118938422 LOC106594299 coding upstream 6317 2103128 ~ 2104021 (-)
LOC118938405 NA coding upstream 32015 2128932 ~ 2141322 (-)
LOC118938409 NA coding upstream 68080 2164997 ~ 2170791 (-)
LOC110513814 LOC106564064 coding upstream 97205 2194122 ~ 2243480 (-)
LOC118938412 LOC106564064 coding upstream 154735 2251652 ~ 2259183 (-)
G1136398 NA non-coding downstream 28344 2000877 ~ 2002464 (-)
G1136396 NA non-coding downstream 31436 1998885 ~ 1999372 (-)
G1136395 NA non-coding downstream 33544 1996925 ~ 1997264 (-)
G1136368 NA non-coding downstream 129246 1901122 ~ 1901562 (-)
G1136419 NA non-coding upstream 2608 2099525 ~ 2100002 (-)
G1136444 NA non-coding upstream 59411 2156328 ~ 2214265 (-)
G1136446 NA non-coding upstream 67765 2164682 ~ 2180431 (-)
G1136447 NA non-coding upstream 74733 2171650 ~ 2187711 (-)
LOC110487328 NA other downstream 359769 1668582 ~ 1671456 (-)
LOC110506157 LOC106593263 other downstream 465399 1562605 ~ 1565409 (-)
LOC110500808 LOC106592918 other downstream 499300 1524636 ~ 1531929 (-)
LOC118938134 NA other downstream 575503 1454762 ~ 1458002 (-)
G1136432 LOC106595012 other upstream 32801 2129718 ~ 2170439 (-)
G1136455 NA other upstream 90523 2187440 ~ 2245318 (-)
LOC118938509 LOC106564044 other upstream 411346 2507219 ~ 2518648 (-)
G1136568 NA other upstream 424910 2521827 ~ 2522361 (-)
G1136416 NA non-coding upstream 53616 2090487 ~ 2091614 (-)
G1136417 NA non-coding upstream 56855 2093726 ~ 2095171 (-)
LOC110515515 LOC106563994 other upstream 43275 2030808 ~ 2096917 (-)

Expression


Co-expression Network