LOC110513814 (LOC106564064)


Basic Information

Item Value
gene id LOC110513814
gene name LOC106564064
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 2194122 ~ 2243480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942547.1
aagaacaacaaggcgccaactctttcaaccacctccgtagcctgctagacaacataaaactgaaagattgaTTCTTTAGACCATGTTATTGTACATTAGCTAATCTCAGTGTTTTAGACAAATTTCGGTTGACGTATCTACTGGTGAACTTTAACCTAATGTGCTTGTTCAATTTGCAAACTTGTTAAAGATTGATACTGAGGTtagcactaggctagtcgctaatgctagctagctagctagctagctaacatccctgaccatgagctcactGAACTACTCCTCCCTTGCTAATGAAGAGGTCTGTTTTACGGAGAAAGAatctttcagaatgaaaaaggaggaagaggaggctgttatagtgaaagaagagaaagaacctttcagagaggaagaggatgctatCTTAATAAACGTGAAGGATGAAGACGTTTTGAGAGTGAAAAAGGAGGAGACAGAAGATCCGATtgacaccagagagagacatgactgtGGTGGATCCTCTGCGGatcctcaacaacatcctgatgctgacgaggcagagaagagtctctccagatcagaacaccagatggacaacgctagcccttccaCCCTCCCGGAGTCCATGTGTCGTgcctctcctggtagcaccttaccgctgggtatgaagaggttgtctgtgctgctggtggactgcaggaaaacaacggggctgagtggaactgtgagaggaggagaagagatgaaaggatcagatttgactcatcaaagagaaagaccagactcagaggaaccagagccagggacgtccaaaccagcaagacgacaccagtgctcccagtgtggaaatagTTTCAATGGGTCAGGGGATCTGAAAAAAcgcgagagaatacacacaggggagaagccttaccactgctcacaATGTGGAAAGATGTTTAACCGGAAAGGAcacctgaaagctcatgagaaaatacacacaggggagaagacttaccactgctcccagtgtgggaagagtttcaaccggtcaggggatctgaaaaaacatgagagaatacacacaggggacaagccgtaccactgctcccagtgtggaaagtgtttctaCCAGTCAGGGGAGCTGAAACAGCATGAGAgaattcacacaggggagaagccttaccactgctcacaatgtgggaagagtttcaactggtcaggggatctgaaaaaacacgagagaatacacacaggggagaagccttaccactgctcccagtgtggaaagagtttcaaccAGTCAGGGGATCTGAAAAAACACGAGAAAATTCACAccggggagaagccttaccactgctcacaATGTGAAAAGATGTTTAACCAGAAAGGAcacctgaaagctcatgagaaaattcacacaggggagaagccttaccactgctcacaATGTGGAAAGATGTTTAACCAGAAAGGACACCTGAAAGCCCATGAGAaaattcacacaggggagaagccttaccactgctcccagtgtggcaagtgttttagccagttagggagcctgaaacaacacgagagaattcacacaggagagaagccttaccactgctcccagtgtggcaagtgttttaGCCAGTTAGGGACCCTGAACCAgcacaagagaatacacacaggggagatgcATTACCACTCCTCCCAGGGTGCAAACTTTTGCCAAATTAGGAAGCCTAAAAGAacatccctgaccatgagctcactGAACTACTCCTCCCTTGCTAATGAAGCGGAGGTCTGCTTTACGGAGAAAGAatctttcagaatgaaaaaggaggaagaggaggctgttatagtgaaagaaccttttagagaggaagaggatgctatCTTAATAAAcgtgaaggaggaagacgttttgaGAGTGAAAAAGGAGGAGACAGAAGATCCGATtgacaccagagagagacatgactatggtggatcctctgcggagcctcaacaacatcctgatgctgacgaggcagagaagagtctttccagatcagaacaccagatggacaacgctagcccttccaCCCTGTGTCGTGCCTCTCTgggtagcaccttactgctgggtatgaagaggttgtctgtgctgctggtggactgcaggaaaacaacagggctgagtggaactgtgagaggaggagaagagatgaaaggatcagatttgactcatcaaaGAGAAAAACCAGACTCAGAGGAACCAAAGCCATGGACTTCCAAACCAGCAAGAAGACACCAgtgttcccactgtggaaagggttgGAACAAGTTAAGTGAGCTtaaacgacatgagagaatacacacaggggagaagccttaccactgttcccagtgtggaaagggtgTTAACGATTTGGGGAAGCTGAAacgacacgagagaatacacacaggggagaagccttaccactgctcccagtgtggaaagggttttaatgATTTGGGGAatctgaaacgacatgagagaatacacaaagggcagaagccttaccactgctcccagtgtggaaagggttgtaAAGATTTGGGGAAGCTGAAACGACACGTGAgcatacacacaggggagaagccttaccactgctcccagtgtggaaagggttttaatgATTTGGGGAATCTGAAAAGACACGAGAGaatgcacacaggggagaagccttaccactgctcccagtgtggaaagtgtttcacctGGGCATGGAATCTGAAAcagcacgagagaatacacacaggggaaaagccttaccaatgctcccagtgtggaaagtttTTCGTCTCGGCAAGGTATCTGAAAcagcacgagagaatacacacaggggagaagccttaccactgctcccagtgtggcaagtgtttcaACGGGGCAGGGGATCTTAAAAAACACGAAagaatacatacaggagagaagccttaccactgctcccactgtggcAAGTGTTTTAACCAGTTAGGGGCTGTGAAAcagcacgagagaatacacacaggggagaagcctgctcccagtgtggcaagtgttttaaCCATTTACAATCGGTTTCATGTTCTcgtccacacaggagagagacatgactatcctggatcctctggggagcctcaacaatatcctgatgctgacgaggcagagaagagtctctccagatcagaacaccagatggacaacgctagcccctcctccctcccggagtcccaGTGTCGAGCCTCTCCCGGTAGCaacttactgctgggtatgaagaggttgtctgtgctgctggtggactgcaggaaaacaacggggctgagtggaactgtgagaggaggagaagagaagaaaggatcagatttgactcaccgaagaggaaAACCAAACTTGGACGAACCAAAgacgtccaaaccagcaagacaacacctctgctcccagattggaaagagttttaccaagTCAGTAAGCCTGAAAATACATGAGGGAATACACACAGGGCAGGAGCCCTTCCTTTGCtcccagtgtgggaagagttttaagcGGTTAGACACCCTCAAAGCTCATGAGcgtatacacacaggggagaagccttacaaaTGCTCAGACTGTGGGATGGCATTTTACTCATCACACTCACTTAAAAGTCACGTGAgaattcacacaggggagaagcctttccattGCTCTCAGTGTGAGAAGAGTTTTAAGCGGTTAGACACCCTCAAAGCTCATGAGCGTATACACACAGTGGAGAAGCCTTTCCATTGCTCCCAATGTGGGAAAAGTTTTAAGCGGTTCCTCACCCTCAAAGCTCATGAGcgtatacacacaggggagaagcctttccattgctcccagtgtgggaagagttttaagcGGTTAGACACCCTCAAAGCTCATGAGcgtatacacacaggggagaagccttacaaaTGCTCAGACTGTGGGAAGATATATTACTCATCACACTCACTTAAAAGTCATATGAgaattcacacaggggagaagccttacctcTGCTCCctatgtggaaagagttttagtcACTTTGGAAACATGAAAGctcatgagcgaatacacacaggggagaagccttaccactgctcccagtgtggaaagagttttaactaTTCAGGAAACCTAAAAGAGCACATGAGactgcacacaggggagaagccttacaaaTGCTCAGACTGTGGGAAGACCTATTACTCTTCACAGTCACTTAAAATTCATGTGAGAATCCACactggggagaagccttacctctgctcccagtgtggaaatagTTTTAGTCACTTAGGAACCCTGAAAGTTCACCAGCGactacacacaggggagaagccttaccactgctcccagtgtggaaagagttttggcCAAGTAGGAACcctgaaagctcatgagcgaatacacacaggagagaagccttaccactgctcccagtgtggaaagcgttTTAACCATTCTGGAAAGCTGAAAAAGCACGTgagaattcacacaggagagaataaTTACTTCTCCTTGACTTCTTAAAATgcatcagagaacatacacagtgctcccaGTGTCTTTAATTGTTGACTGAGAATGTGTTTGCTTGTTTATACCATATGAATTTAAATTGTACAATGTATACTCAAAAAtatatttgtgtgtttttattagaAAACATGAATTGAATATGGAGTACAGTGGttcgtcctttaaaagttgcagcgtactgcagcacagcttgcatGGTGCCACAGAATTCTATGGCATGTTATTTACGTGTCGACCACTGTCACCAATAATGCTAGtaagtgctagtttgaccaccagagggcatctttgagaagcatttgattgccttcaatagtggctgtactagagaatttacaacttgtttttgtaagaacaATGTAAATGGGACTGATATCAAGAAATGTTTCTTTATTAATTTGATTAACCTGAACCCAGtttcgctagcggaacccctcgccaacagccaatgaaatttcagccaaataaaaatcaacagaaatctcataaatcaaatttctcaaacatacaagtgtaagatataattctc

Function

NR:

description
PREDICTED: zinc finger protein 721-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942547.1 True 5033 mRNA 0.46 11 2194122 2243480

Neighbor

gene id symbol gene type direction distance location
LOC118938409 NA coding downstream 23331 2164997 ~ 2170791 (-)
LOC118938405 NA coding downstream 52800 2128932 ~ 2141322 (-)
LOC118938422 LOC106594299 coding downstream 90101 2103128 ~ 2104021 (-)
LOC110515515 LOC106563994 coding downstream 97205 2030808 ~ 2096917 (-)
LOC118938506 LOC106594488 coding downstream 183394 2002549 ~ 2010728 (-)
LOC118938412 LOC106564064 coding upstream 8172 2251652 ~ 2259183 (-)
LOC118936483 NA coding upstream 41175 2284655 ~ 2292145 (-)
LOC118938507 NA coding upstream 92803 2336283 ~ 2375402 (-)
LOC118938413 NA coding upstream 108255 2351735 ~ 2360192 (-)
LOC110518365 NA coding upstream 136616 2380096 ~ 2431119 (-)
G1136447 NA non-coding downstream 6411 2171650 ~ 2187711 (-)
G1136446 NA non-coding downstream 13691 2164682 ~ 2180431 (-)
G1136448 NA non-coding downstream 19959 2173124 ~ 2174163 (-)
G1136419 NA non-coding downstream 94120 2099525 ~ 2100002 (-)
G1136475 NA non-coding upstream 13603 2257083 ~ 2257797 (-)
G1136489 NA non-coding upstream 24787 2268267 ~ 2296934 (-)
G1136494 NA non-coding upstream 35603 2279083 ~ 2307332 (-)
G1136506 NA non-coding upstream 80200 2323680 ~ 2418197 (-)
LOC118938509 LOC106564044 non-coding upstream 264011 2507219 ~ 2518648 (-)
G1136432 LOC106595012 other downstream 23683 2129718 ~ 2170439 (-)
LOC110487301 LOC106595892 other downstream 208719 1938873 ~ 1996032 (-)
LOC110487328 NA other downstream 523083 1668582 ~ 1671456 (-)
G1136568 NA other upstream 278347 2521827 ~ 2522361 (-)
G1136948 NA other upstream 615551 2859031 ~ 2860041 (-)
G1137174 NA other upstream 886133 3129613 ~ 3130553 (-)
LOC110514041 LOC106585204 other upstream 917799 3161191 ~ 3197982 (-)

Expression


Co-expression Network