LOC118938398 (LOC106612417)


Basic Information

Item Value
gene id LOC118938398
gene name LOC106612417
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 2268647 ~ 2276355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942209.1
GCTTCTGATTTAACCACGCTGTGCCTTGCTAGCAAACCTAAAACCGAAACATTGGAGCTCTTTAGACCAATCTTGTGTATATTACTCTTAGTGATTTCAACATAATTCTGTTTACATATCTACTGGTTCATTTAAACGTAATTTGCTTGTTAAATTAGCAAATGTGTTACATTGATACTGCACTAGGCTAATCTCCCGGAGCATAAACTCACTAATCTAGACGGAGAAAGAAACTGGTGAAAGGAGGCAAAGAAGCTTGAAGAATGAATAAGGAGGCTATCACATTGAAACAAGAGgatgatattacagtgaaagaggaaTATGGGAACGAGGTTGTCAAAGTGGAAAAAGAGGTAGAAGCTTTCAGAATCAAAAAGGAGGAAGATGCCGTAAAAttgaaagaggaggaagacctTTTTGGAGTAAAAGAGGAGGATATCTCAATAAaagaggaagacgttttgggagtgaaaaATGAGACTGAAGATCCGATTACCACCAAAATTGACCAGGAGAGTGACACAGAAGGAATGGATGAGGACTCTGTGAGTGACCAGAGTTTTGATTCCAGCGCGGAAGAAATGTTTTTGGAAGGAGAAGATCCACTTTTTGATCATCCCTCCGATTCTGATTGGGAGCCCCCACTGCCAAGGTGCCCATCCCCGACAGGAGCTGGATCATCTAGCTGGACCCCTGCTGTCTCCGGCTCCACACCTACCCCCGCCCTGCCAGGTGGGAAGTCTGTGACAAAGAAGCGGAGGTGGGGAAGAGCTAAACCTGcaatcagagaggaggagggtcgTTGGCACTCTGTGCTGGAGGAGGATGTGTTGCCTACACCTCCAGTATTCAGACCGAAGAGGCCATCAGGACCTCAGCTGGACATGACCTCTAAGTACAGCCCCATGCAACTTTTTCAGCTGTTTTTCACCTCGGCCGTTGTTGATTCCCTGGTGTTGAACACTAATAAGTACGGAGCTAAGAAGCAGGAAGGCAAGAAAGAGACATGGAAGCCCATTTCCAGGTCAGATCTTTTTTGTTACTTTTCTATGGTCATTTACATGGGTGTTGTGAAGCTAAAAACCCTGAAGGACTACTGGAAATCTGCTCCCCTCTATCAACTGCCTTTCCCATCCACTGTCATATCATGCAAAAGGTTTCTGACAATCTCAGGGGCGCTTCATAtcagtgacccagaagttgaTGAGGACAATGAGAAGATGAGAGGCACAGCAAGGTTTGATAGGCTGTGCAAAATAAAACCTCTCTACACCAGCATCGTTGAGGCTTGCAAAGCCTATTTTCAGCCTGCCCAGAACCTTTCcatagatgagaggatggtagcctcaaaggccagAAATGGCCTAAAACTCTACATGCGTAACAAACCGACTAAATGGGGTTACAAACTGTTTGTTTTGGCCGATTCTGCGTGTGCATACACGTGCAATTTTTTTGTCTATGAGGGTAAGAATGCGACCGGTAAGAGACTAAGCTATGACTCCGTTATGCAGTTATTAGATTTTCAGCTGCTagggaagggctacaaactgtttgtggaTAACTTCTACACAAGCCGTACCCTCTTCACAGACCTGAGGAAGCTGGAGAtgtgggcttgtggcaccattcggACCAACAGAGTGGGTTTCCCGAAAACAAAGGTGAACGACATGCCTAAGCGGGCTGAGCGGGGTACCATGAGATGGATCCGTGAAGATGGCCTGCTGTTTGTGAAGTGGATGGACACCAGAGAGGTGGCGATGTGCTCCActatccacaagtccttcagtggtGATCACGTCGTCAGGCGTGTGAAGGACGCTACAGGGGCATGGACCaccaaaaatgtccccattcctgCAGCCAtcaaggactacaacaagagcatgggaggtgtggacctgtcagatgcgCTGATAGGATACTACAATGTTCTCCACAAGACAATGAAATGGTATAAGACATTTTTCTAtcatttcattgacattgctgtggtgaatgccttcatcctccagaaggaaatggctaagagctgtggacagccccccatctcacagctagcatTCAGGGAGCAgctcatccaggagcttgctagctacagcaagTCCACTGTAGCACCTTCTGTCCCCTCTACGTCTGTCCCCTCTGCTCCAACTAGTTgtgttcacctgcccagattcatCTCTGCAGACATGAATGTGCCTCGGGGCAAAAAGGGCACAGTAGGGAGacgtcgttgtgttctgtgtcacaggaaatgccccatcacctgcaccagcTGTTCAGtaaccctctgctttacagcagaaagagactgctattggGCATGGCATCAGAAgaacaatattgtgtagaggactgagggtcttcacaaTATTGTACATTATACATTGAATGTGCgtaaatagttacccttgttaTTTTAAAATTTTTTCAAATGttcatattttttttgggggggggggggggggggtggtatgtTAGAATGGCATTCAAGTGTTTTGTATATAGTAATTTActtcaaaatgtatcactgtaccaattcggccacttgggtacatttgggcaacttgtgtgggacacctagGTGACTATATactcaatgtcatgtagctcactcatTCCTGAAGATATCTTTCTGAAACTTTTTTCAAATACTGTTGCCATCTTATGTTCTCCATTCAAACCacccccagcatcctatctgtgtgTTTGGATGTTCTTGTTTCAGTTGAAAGATGAT
>XR_005035695.1
TTCAGAATCAAAAAGGAGGAAGATGCCGTAAAAttgaaagaggaggaagacctTTTTGGAGTAAAAGAGGAGGATATCTCAATAAaagaggaagacgttttgggagtgaaaaATGAGACTGAAGATCCGATTACCACCAgagacagacatgactattgtggatcctctggggagcctcaacaacatcctgatgctgatga

Function

NR:

description
zinc finger protein 239-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942209.1 False 2746 mRNA 0.46 3 2268647 2276355
XR_005035695.1 True 200 mRNA 0.42 2 2269009 2270151
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Neighbor

gene id symbol gene type direction distance location
LOC110512827 LOC106612417 coding upstream 54813 2205954 ~ 2213834 (+)
LOC118938397 LOC106612417 coding upstream 112372 2150063 ~ 2156275 (+)
LOC118938402 LOC106612417 coding upstream 148910 2114154 ~ 2119737 (+)
LOC118938423 NA coding upstream 267022 2000842 ~ 2002464 (+)
LOC118938395 LOC106594479 coding upstream 307028 1942017 ~ 1961619 (+)
LOC110513807 NA coding downstream 21469 2297824 ~ 2398152 (+)
LOC110487337 LOC106590947 coding downstream 247505 2523860 ~ 2531900 (+)
LOC110487320 LOC106564052 coding downstream 259819 2536174 ~ 2556723 (+)
LOC110487161 LOC106564041 coding downstream 288637 2564992 ~ 2570207 (+)
LOC110485339 NA coding downstream 297791 2574146 ~ 2574874 (+)
G1135689 NA non-coding upstream 87600 2164956 ~ 2181047 (+)
G1135658 NA non-coding upstream 164145 2103967 ~ 2104502 (+)
G1135625 NA non-coding upstream 229962 2000309 ~ 2068901 (+)
G1135637 NA non-coding upstream 237994 2029832 ~ 2030653 (+)
G1135672 NA non-coding downstream 6601 2282956 ~ 2429608 (+)
G1135767 NA non-coding downstream 128215 2404570 ~ 2427825 (+)
G1135770 NA non-coding downstream 134454 2410809 ~ 2411180 (+)
G1135785 NA non-coding downstream 230958 2507313 ~ 2508166 (+)
LOC118938404 LOC106594479 other upstream 344848 1914705 ~ 1935643 (+)
G1135455 LOC106607538 other upstream 445095 1804373 ~ 1823552 (+)
LOC118938396 LOC106595654 other upstream 643171 1623073 ~ 1627806 (+)
G1135355 NA other upstream 882844 1382438 ~ 1385803 (+)
G1136602 LOC106613263 other downstream 306942 2583297 ~ 2584334 (+)
G1136609 NA other downstream 323653 2600008 ~ 2602694 (+)
G1136633 NA other downstream 377006 2653361 ~ 2656653 (+)
G1136677 LOC106564039 other downstream 451926 2728281 ~ 2732015 (+)

Expression

LOC118938398(LOC106612417) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC118938398(LOC106612417) Expression in each Bioproject

Bar chart with 18 bars.
LOC118938398(LOC106612417) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network