LOC118936483


Basic Information

Item Value
gene id LOC118936483
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 2284655 ~ 2292145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942275.1
ATGatgagagagtggaagagggtcTACCTGTAAGATATTCAGGTTGGTGAATTTAACAATGACTTGCAGGCAGTTGGTTTAGAATAACTGATGACCAAAAATGAATACagattataccaccacccaaaaggGCACTTCAGAGACTGGAAGGGCAAAGGGGCCTGTGCTCTACAAAGGTAGAGCCCTGTCTGTCCACGTCCTATCTGTCCTTAaacaaagtgggcactgcttcATGTGGCAACAGCAACCCTCACCTAAATAGCCCATATGTCACTGGGTGAGTTTTCATTATTTTTGGGCAGCATTATATGAGGTGTTATTATCTGTTGTTAGCGATGAGCTTTGGTCAATTTAGCTTGGAATATGCTACCATTGTCAATCTGTCACCTAATCCTACCTAATGAGCAGGCCAAACCTGGAGGAAAGTATTGGCTGTAAGAAGGAAGAGAAGACATAACATCTGTTTCTTTTTAAATGACTTCTTATGACATTGCTTGCCAGAATAAACATTAATTAATATTTTTCCAAACTGCGCTACCCACTCCAGATGGCGATATGAGTTTTTGAGGTGATGCTTCttgtgtgacgtataatctagtggacggaactgGAGGCTTCTTCAACAGCGACAAAAGGCTTTCTGATTCAACCAACGTGGTGGTTTGCTAGCGAACATTAAACCGAAACATTGAAGCGTTTAAGAAAAATCTTGTGTATATTATTGTTAGTGTTCTAAGCACAATTCTATTTACATATCTACTCGTTCATTGAAACGTAGATTGCTTGTTAAATTAGCTAATGTGGTAAATTGATACTGCACTAGGCTAATCGCCCGAAACATGAGCTCACTAATCTCGACGGAGAAAGAAGCTTTCAGGAtgaaaagggaggaagaggaggctatcacattgaaagaagaagaggatgatATTACGGTGAAAGAGGAATATGGAAAAGAGGTTGtcagagtggaagaggaggaggtagaagcttTCAGAATCAAAAAGGAGGAAGATGCCGTAAtattgaaagaagaggaagaaactTTTGGAGTAAAAGAGGAAGAGGCTATCtcaattaaagaggaggaggaagacatttTGGGAGTGAAAAGGGACGAGGCTGAAGATTCGATTAAGACCAgagagagacatgactttcgtggatcctctggggagcctcaacaacatcctgatgctgacgaagTAGAGAGTTgttccagatcagaacaccagatggacaacgctagcccttcctcTCTCCCGGAGTCCCCGTGTCGTGCCTCTCCCGGTATTGGCTTACTGTTGGGtaggaagaggttgtctgtgctgctggtggactgcaggaaaacaacggggctgagtggaactgtgagaggaggagaagagaagaaaggatcagatttgactcatcaaagagaaagaccagactcagaggaaccagagccagggacgtccaaaccagcaagaAGACACCAGTGCTCTTACTGTGGAAAGTGTTTTAACAAGTTAGGggtcctgaaacaacatgagacaatacacacaggggagaagccttaccactgctccaagTGTGGAAAGTGCTTCAACCGGTCAGGAcacctgaaagctcatgagctagtacacacaggggagaagccataccactgctcccagtgtggcaagtgtttcaaccagtcaggggatctgaaaaaacacgaaagaatacacacaggggagaagccgtaccgctgctcccagtgtggaaagtgtttcagcTGTCCAGGGAATCTAAAAAACCAcaaaagaatacacacaggggagaagccttaccactgctcccagtgtggaaagtgtttcggcTGGCCAGGGAATCTAAAAAAACACGaaaaaatacacacaggggagaagtcttaccactgctcccagtgtggcaagtgtttcTACAAGTCAGGgaacctgaaacaacatgagagaatacacgcAGGAGAGAAGCCACTGCTTACCACAATTCTCCCAGTGTGGAAGGAGTTTTAACCAGAAAAAACAGCCTGAACCAACATGAGAAAATACACAAAGGGGAGATGCATTACCATTCCTcccagggtgcaaagcttttgcccatttaggaagcctgaaaaaACATGACACAGAGGAGAAGGCTTTACAGAAGATTAGACTTTGAGAAAACATATTACTCATAACAATCACTTAAACGTCAttagagaatccacacaggagagagaaatgacTTCTCTTAGCGCgtaattccactacccaagacctataagcttgctgccagctcttagcaaactgttggaaaaaattgtgttttaccaaatacaatgc

Function

NR:

description
gastrula zinc finger protein XlCGF17.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942275.1 True 2327 mRNA 0.44 4 2284655 2292145

Neighbor

gene id symbol gene type direction distance location
LOC118938412 LOC106564064 coding downstream 25472 2251652 ~ 2259183 (-)
LOC110513814 LOC106564064 coding downstream 41175 2194122 ~ 2243480 (-)
LOC118938409 NA coding downstream 113864 2164997 ~ 2170791 (-)
LOC118938405 NA coding downstream 143333 2128932 ~ 2141322 (-)
LOC118938422 LOC106594299 coding downstream 180634 2103128 ~ 2104021 (-)
LOC118938507 NA coding upstream 44138 2336283 ~ 2375402 (-)
LOC118938413 NA coding upstream 59590 2351735 ~ 2360192 (-)
LOC110518365 NA coding upstream 87951 2380096 ~ 2431119 (-)
LOC118938508 NA coding upstream 152298 2444443 ~ 2468862 (-)
LOC110493356 LOC106592333 coding upstream 189463 2481608 ~ 2492020 (-)
G1136475 NA non-coding downstream 26858 2257083 ~ 2257797 (-)
G1136444 NA non-coding downstream 70390 2156328 ~ 2214265 (-)
G1136481 NA non-coding downstream 75938 2208050 ~ 2208717 (-)
G1136447 NA non-coding downstream 96944 2171650 ~ 2187711 (-)
G1136446 NA non-coding downstream 104224 2164682 ~ 2180431 (-)
G1136506 NA non-coding upstream 31535 2323680 ~ 2418197 (-)
LOC118938509 LOC106564044 non-coding upstream 215346 2507219 ~ 2518648 (-)
G1136565 NA non-coding upstream 228653 2520798 ~ 2521112 (-)
G1136783 NA non-coding upstream 231761 2523906 ~ 2536759 (-)
G1136788 LOC106564059 non-coding upstream 238330 2530475 ~ 2556166 (-)
G1136455 NA other downstream 39337 2187440 ~ 2245318 (-)
G1136432 LOC106595012 other downstream 114216 2129718 ~ 2170439 (-)
LOC110515515 LOC106563994 other downstream 187771 2030808 ~ 2096917 (-)
LOC110487301 LOC106595892 other downstream 299252 1938873 ~ 1996032 (-)
G1136568 NA other upstream 229682 2521827 ~ 2522361 (-)
G1136948 NA other upstream 566886 2859031 ~ 2860041 (-)
G1137174 NA other upstream 837468 3129613 ~ 3130553 (-)
LOC110514041 LOC106585204 other upstream 869134 3161191 ~ 3197982 (-)

Expression


Co-expression Network