LOC110487163 (LOC106564056)


Basic Information

Item Value
gene id LOC110487163
gene name LOC106564056
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 2497294 ~ 2503751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942270.1
caacaacACGACAACTCTTTCAatcacctcggtagcttgctagccaacgTTAAACTGAACGATTGAGGCTTTAGACCATGTTTGTGTACATTAgctaatctcagtgttttaaacaCTTTTCAGGTGACGTTTCAACTGGTTAACTTTAACCTAATTTGCTTATTCATTTTGCAAAGGTGTTAAATATAACGTGACTGAGGTtagcactaggctagtcgctaatgctaccTAGCTAGATAACATCCCAGACCATGAGCTCACTAAACTACTCCTCCCCTggtaaagaagaggagaaagaatctttcagaatgaaaaaggaggaagaggaggttgttatagtgaaagaagaagaggatgtTATTGGGAAAGAAGAAGATGTTATAGTGAAAAAAGAGAAAGCAccttttagagaggaagaggatgctatCTCAATAAAGGTGAAGAAGGAAGACGTTtggggagtgaaagaggaggagacagaatatcagattaacaccagagagagacatgactatcctggatcctctggggagcctcaacaacatcctgatgctgacgaggcagagaagagtctctccagatcagatcaccagatggacaacgcaAGCCCTTCCGCCCTCCCGGAGTCCCCGTGtcgtgcctctcccggtagcaccttactgctgggtatgaagaggttgtctgtgctgctggtggactgcaggaaaacaatggGGCTGAGTGTAACtgttagaggaggagaagagaagaaaggatcagattttacacatcaaaGAGGAAAACCAAACTTGGAGGAACCAGAGATGTCCAATCCAGCAAGACGACACctctgctctcagtgtggaaagagttttatcaagttaggaagcctgaaagctcatgagcgaatacacacaggggagaagccttaccattgctcccattgtggaaagagttttagccagttaggaagcctgaaagctCATGgccgaatacacacaggggagaagccttaccactgctcacattgtggaaagagttttaaccgcTTAGGAAGCCTAATTGCTCATgggcgaatacacacaggggagaagccataccattgcgaacagtgtggaaagagttttaacaagTTAGATAACATGAAATCTCATGaacaaatacacacaggggataagccttaccactgctcccagtgtggaactAAGTTTACCAAGTTAGGAagcctgaaaagacatgagaggacacacaccgAAGCAAAGCCTTTCCATTGCGCCTTGTGTGGAACGAGTTTTAACCATTTAGGAAacctgaaaagacatgagagaatacacacaggggagaagcctttccattGCGCaaagtgtggaaagagttttagctTGTTAGGAAACCTACAATCTCATGAGCgaattcacacaggggagaagccataccattgcacccattgtggaaagagttttaaccagtTAGGAAACATGAAATATCATGAGcgaaatacacacaggggagaagccataccatcgcgctcagtgtggaaagagttttacggAGTTAGGAAAGCTGAAAGctcatgagcgaatacacacCTTACAAATGTCACTTAAAAGGCATGTGAGAATCCACAGAAAAATAACTTCTCCTAGTATGTAAACTGATATTTCACATCACCTttaagttcatcagagaacatacacagtgctcccatTGTCTTCTATTGTTGACTGAGAATGTGTTTACTTGTTTATACCATATAAAATGAaattaaattgtaaaaaatatactctaaaatatatttgtatgtcTTTGTTAGAAAATATTAATTGAATATGGACTATGTCAGTTTGAATACAGAGTAAATCAGATTCCATGTGTCCAATGGTCCTTTTTTAAACTCCATGTGTGTTTATCTGGgtgtcattcctccagcactacagataatcaagtgatatttggatgtgATGCATTTGCTCCATTTTTTCACGTTTGCATCGTCTGATGATTTAATGACATGAAAATGTACACTGACTCGCCCACGGATTaaataaagaatcttggtttga

Function

NR:

description
PREDICTED: zinc finger protein 345-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942270.1 True 2042 mRNA 0.42 4 2497294 2503751

Neighbor

gene id symbol gene type direction distance location
LOC110493356 LOC106592333 coding downstream 5274 2481608 ~ 2492020 (-)
LOC118938508 NA coding downstream 28432 2444443 ~ 2468862 (-)
LOC110518365 NA coding downstream 66175 2380096 ~ 2431119 (-)
LOC118938507 NA coding downstream 121892 2336283 ~ 2375402 (-)
LOC118938413 NA coding downstream 137102 2351735 ~ 2360192 (-)
LOC118938509 LOC106564044 coding upstream 3468 2507219 ~ 2518648 (-)
LOC110495017 LOC106564069 coding upstream 226048 2728631 ~ 2748424 (-)
LOC118938394 LOC106564036 coding upstream 240489 2744240 ~ 2752006 (-)
LOC118938393 NA coding upstream 252470 2756221 ~ 2768561 (-)
LOC118938421 NA coding upstream 268034 2771785 ~ 2773249 (-)
G1136506 NA non-coding downstream 79097 2323680 ~ 2418197 (-)
G1136494 NA non-coding downstream 189962 2279083 ~ 2307332 (-)
G1136489 NA non-coding downstream 200360 2268267 ~ 2296934 (-)
G1136475 NA non-coding downstream 239497 2257083 ~ 2257797 (-)
G1136481 NA non-coding downstream 288577 2208050 ~ 2208717 (-)
G1136565 NA non-coding upstream 17047 2520798 ~ 2521112 (-)
G1136783 NA non-coding upstream 20155 2523906 ~ 2536759 (-)
G1136788 LOC106564059 non-coding upstream 26724 2530475 ~ 2556166 (-)
G1136789 NA non-coding upstream 52705 2556456 ~ 2556728 (-)
G1136455 NA other downstream 251976 2187440 ~ 2245318 (-)
G1136447 NA other downstream 309583 2171650 ~ 2187711 (-)
G1136432 LOC106595012 other downstream 326855 2129718 ~ 2170439 (-)
LOC110515515 LOC106563994 other downstream 400410 2030808 ~ 2096917 (-)
LOC110487301 LOC106595892 other downstream 511891 1938873 ~ 1996032 (-)
G1136568 NA other upstream 18076 2521827 ~ 2522361 (-)
G1136948 NA other upstream 355280 2859031 ~ 2860041 (-)
G1137174 NA other upstream 625862 3129613 ~ 3130553 (-)
LOC110514041 LOC106585204 other upstream 657528 3161191 ~ 3197982 (-)

Expression


Co-expression Network