LOC118938394 (LOC106564036)


Basic Information

Item Value
gene id LOC118938394
gene name LOC106564036
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 2744240 ~ 2752006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942197.1
AACCTGCTGGGTAAAGTCGTTGCTGTATTGAAGTGGCGTGTTTTAGGGAGTCCCACAAAAAACACACAGCGAATGTGATGTCTCTGATCTGACGATACTCGATTGGTCTGGCCTGTGACTGAGCGCAACAAAACCAGACAAACCGGAAGTTGCTGCTCTGCTACTAAAGATGGTAGCCAGTTAAGAATCGCGCTAATTAGTAGCTTTCAAGCAAGATATTAATCTCAATATAAATCATACAGCGCCATAGAAAATGACCATTAGTCGAAACTGACGAGATATAGCCTACCTGCCTTTCCACGTGGAAGAATACGGAGGACAGAGACGTGCTAACTACGGAGTTGGCTTTTCTACAAAGAATCTGCAGGACAACATGAGTGGAGAGAAGGAAGCATTGATGGAAGAAATCGAACAGAGTTTACACCCTCTAACGGAGGATAATTTACGACACCTGTGTGAACGCTGTGGAATAGATGGCTCCCAAGTTAAAGGAAAGAACCATCGCTCGTTGGGACGTAAAATCATGGAGGAAATGTGGCTAAATGCAAATTTGGTCAAATCCGAGGAGCATGTAATGTCTTGGTTACGCCAACTGAAAGATGACATCAGGAGGTTACAGGAAGAATCTACTGTGGCACCCATGAGGCCCAGCCAGTCTGATGATGATGCTACAGACTGTGATGAAGAATGGGACATGGAAAACAAGGATTGGTGTCTTAGCAACGGGCTGGAGGCGGAGTCAGCTCCAGAGAACCACACCCCAGAGCAGAGGCAGAGGGGTGACATGTCTCTCCCACCCGCCTCCCCTCTCCCCGAGTCCCCAGGTCCTGCCTCTCCCGCTGGCACATTACTACTGGGTTTGAAGAGGGTGTCTCTGCGGCTGGTTGACTGTAGGAAAACACTGGGGCTGAGTGGAACTacgagaggaggagaagagaaggaataTGGAGATTCAGATTCGATGTCATTAAGTAGGAACAATGGGGACAACCCTAACGGTCGCTCGCTCAGTGGGAGGGTCTTATCATCTGGGAAGGCTCCAGGGTTGAAAGTGATCCAGCGACCTTATAGCTGTGATGTATGTGATAAGAGTTTCACTCAATCAGGAAACCTAAGAAGACACCAAAGAGTACACACAGGAGAGCGGCCATATGTCTGTCCTATATGTGGAAAGAGTTTCCTTATGTCAGGAACACTGTCTAGAcacgagagaacacacacaggggagaaaccatacGGCTGTCCTATATGTGGAAAGCGTTTCCGTACGTCAGGACAATTGACTATACACaagcgaacacacactggagagaaaccttatcaCTGCGATCAATGTGGGAAGCGTTTTACTCAAGCTTGTTCCCTGACTGAACACAAGCGAACACACACTGGCGTGATGTTCCACTGCTCAGACTGTGAGAAGAGCTTCCCTACATCGGTGAAGTTGAAACGGCACCGGCAAacgcacacaggagagaaaccttatcgctgtgatcaatgtgggaagggTTTTGCGAGAGCTTATTCCCTGACTGAACACaagcgaacacacacaggagagaaaccatatgTCTgcgatcagtgtgggaagagatttACTAACTCGGGAACACTGACTTTACACCAGCcgacacacactggagagaaacctcgTAGCTGTGCTATATACAGCTGTAAGCACTGTGAGTGGAGTTTTGCTCATTCAGAAGACCTAGCAAGACACCACCAGAGAAAACACATGTGGGAGGGTATTCAtgtctgtgatcaatgtgggaagagttttgctagTTCTGGAGACCTGAATATACACAAGCGAATACACACTGGGGAGAAACCATAtgtctgtgatcaatgtgggaagagttttgctagTTCGGGAAACCTGAATATACACAAGcgtatacacacaggggagaaaccatatgtctgtgatcaatgtgggaagagctttgcctCATCTGGATTCCTGACTAAACACAAGCATATCCACACCGGAGAGAAACCTTACAGTTGTGAACGGTGTGAGAAGAGATGTGTTTCCAAAGGAGAGTTGAGAACGCACCAGCTTGTACACCCCAGAGAGAACTCTCTCTTCCTGTGTGATCgatgtgggaagagcttcacaCACATGGGATCCCTGAATGTGCACATGCGTaggcacacaggagagaaaccgtacCGCTgcgatcaatgtgggaagagctttATTCAGCCAGTAGAATTGAAAATGCACCAACGagtgcacactggagagaaaccctacagctgcgATCTATGCAGGAAGAGATTCGCTCAGTCAGGACTGCTGACTGTAcacaagagaacacacactggagagaaacgtTATAAATGTGATATATGTGGGAAAAGATTCGCTCAGTCAGGAAACCTGAAGAGTCATCAGAAAACCCACACAGGCAGAAAGAGAACCCACACAGGCAGAAAGAGAACCCACACAGGCAGAAAGAGAACCCGCGCAGAGAAAATCCCCACAGGCGAAGAGAGAAGTCAAACAGACAGAGGACTGAATCACCACCACACCTCCATCCTCCCAGGCATCAGTTCTCATGATCCCTCTGTAGACTCTGGGTAAACATCACAGGATCCCCTCTGTAGACTCTGGGTAAACATCACAGGATCCCCTCTGTATTGACTCTGGGTAAACATCACAGGATCCCCTCTGTAGACTCTGGGTAAACATCACAGAATCCCCTCTGTAGACTCTGGGTAAACATCACAGAATCCCCTCTGTAGACTCTGGGTAAACATCACAGGATCCCCTCTGTATTGACTCTGGATAAACATCACAGGATCCCCTCTGTAGACTCTGGGTAAACATCACAGAATCCCCTCTGTATTGACTCTGTGTAAACATCACAGGATCCCCTCTGTATTGACTCTGGATAAACATCACAGAATCCCCTCTGTATTGACTCTGTGTAAACATCACAGAATCCCCTCTGTATTGACTCTGGGTAAACATCACAGGATCCCTGTATTGACTCTGGATAAACATCACAGGATCTTTGTATTGACTCTGGGTAAACATCACAGGATCTCTGTATTGACTCTGGGTAAACATCACAGGATCCCCTCTGTCGACTCTGGGTAAAATAGCCCACTctgtatttcatatacagtgtACATTGGAGGTGGCAGAGTATGAAGTGCTGTTGGATATGTAAGACACACCAAGTCATACTGGTTAGTATTTTGTTACAATACGAATAACCGCAAGTGATTTTAATGTGCGTTTGTGTCTGACCACGTCCACCGGGAATTCTGATTGGTCAATAGTGGCCATGGTTTTTAAATTTACTAGCCTAGAATATATTGCCTTACGAGACTTTTGTCCATAGAGGGACACCATTATCAAGTTTCCTGCAGATCAGGTCATTCGGTTGCAGAGGAGTAACGGTTTTTAAGTGTTTTGGCAGAAAATCCATCATGGAGGCACTTCTGGTTCTGAGGCAAATGTGTTCCTTGTGAGGagaaggatatatatatatatatatatatatatatatactgcattTCATGACTTTAGGTCAAAACGGGGGTGAAGAGAGCGCAACCTTTTCAAAGTTTGCATTTTCAATCTCTTGTTATAGCGCCACCATCTGGtcaaatcagtgtgtgtgtgatctctaaAAAGGGCAGGATGCATCATTCAGCCAAGTTTTGTCAAAATCGGGCCAGTAGTGTCAGATAATCGCGTGTGACAAACCTAAAAATGTACAAACGGGATAAACATGGTGCTTTCATgataactgggaactctgggaag

Function

NR:

description
zinc finger protein 345-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942197.1 True 3787 mRNA 0.46 4 2744240 2752006

Neighbor

gene id symbol gene type direction distance location
LOC118938509 LOC106564044 coding downstream 225592 2507219 ~ 2518648 (-)
LOC110487163 LOC106564056 coding downstream 240489 2497294 ~ 2503751 (-)
LOC110493356 LOC106592333 coding downstream 252220 2481608 ~ 2492020 (-)
LOC118938508 NA coding downstream 275378 2444443 ~ 2468862 (-)
LOC110518365 NA coding downstream 313121 2380096 ~ 2431119 (-)
LOC118938393 NA coding upstream 4215 2756221 ~ 2768561 (-)
LOC118938421 NA coding upstream 19779 2771785 ~ 2773249 (-)
LOC110493346 LOC106564071 coding upstream 21974 2773980 ~ 2781319 (-)
LOC110493340 LOC106564070 coding upstream 30308 2782314 ~ 2787529 (-)
LOC110493365 LOC106564074 coding upstream 37760 2789766 ~ 2796302 (-)
LOC110495017 LOC106564069 non-coding downstream 14389 2728631 ~ 2748424 (-)
G1136874 NA non-coding downstream 32014 2708532 ~ 2712226 (-)
G1136875 NA non-coding downstream 32897 2709410 ~ 2711343 (-)
G1136790 NA non-coding downstream 83750 2659511 ~ 2660490 (-)
G1136831 NA non-coding downstream 115112 2628625 ~ 2629128 (-)
G1136900 NA non-coding upstream 102577 2854583 ~ 2881323 (-)
G1136956 LOC106594864 non-coding upstream 126039 2878045 ~ 2889026 (-)
G1136903 NA non-coding upstream 151744 2903750 ~ 2904062 (-)
G1136964 NA non-coding upstream 156528 2908534 ~ 2909344 (-)
G1136568 NA other downstream 221879 2521827 ~ 2522361 (-)
G1136455 NA other downstream 498922 2187440 ~ 2245318 (-)
G1136447 NA other downstream 556529 2171650 ~ 2187711 (-)
G1136432 LOC106595012 other downstream 573801 2129718 ~ 2170439 (-)
G1136948 NA other upstream 107025 2859031 ~ 2860041 (-)
G1137174 NA other upstream 377607 3129613 ~ 3130553 (-)
LOC110514041 LOC106585204 other upstream 409273 3161191 ~ 3197982 (-)
LOC110487308 LOC106595461 other upstream 776433 3521685 ~ 3532141 (-)
G1137666 NA other upstream 979615 3731621 ~ 3733300 (-)

Expression


Co-expression Network