LOC118938420


Basic Information

Item Value
gene id LOC118938420
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3382292 ~ 3385041 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035701.1
ctatcagccaatcagcattcagggctcgaatcacccagtttataatgtctgatataccacggctatcaGCCAataagcattcagggctcgaatcacccagtttataaatatatataaaatgagGGTAATTCATATTGAAGGGAAGAGGTTGTTTGTCTGTTATGGGAGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTTTGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTATGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTGTAGAGAGGGTTGATATGATTATGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTGTAGAGAGGGTTGATATGATTATGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACGAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGTGTCAGTGGTAATAACTAGAGAGGGTTGATATGATTCTGTTATGGGGGTCAGTGGTAATAACTGTAAtaaacctgttcctggagagctaccctcctgtaggttttatctccaaccctgttcctggagagctaccctcctgtaagttttatctccaaccctgttcatggagagctaccctcctgtaggttttaatctccaaccctgttcctggagagctaccctcctgtaggttttaatctccaaccctgttcctggagagctaccctcctgtaggttttaactgcAAACCCAGTTGCAACTAACCCGATTCATCTTATCAGCCAGCTAATTTgtagaatcaggtgcgctagattagggaTGGATTGAAAACCTataggagggtatctctccaggaaggagggtagctctccaggaacagggttggagataaaaaacctacaggagggtaggggCCCAGGTTCTTGTTAGTTTTATTCTGACACCctgtcctattccctatatagtgcagtgtgCACTATATTTGACCAGAAcctctgtagggaatagggtgtcacaaCATTCTGTTTCCATGGTGACGTGGAGCTCAGCTTGTCTCGTTTGAAGGCAACACACATATTGCCTTTCTTCTCTTTTTACAAGGTTACTTTAAAAATAAATAGTTAAGCACTTGAGTTTCATATGGTAAtcgtaaataaaaactatttctACTTCCTGCATTCAGAAAGAGTTTATTAAATATGGCGATATCCAGCTGTTGTCATTTTCAATTTAAGGAAATCACCTGTTTGAgtgttcgtcccaaatggcacccgattccctatgtagtgcactacttttgaccaggacctagaGGGTAAGCCATAGGGCCTTGGTCAAAAATATAGTGCACTtacatagggaagagggtgccgtttgggatgaaTGCTGGGACAGGTGGGACTCCATTGTTTAACATAAAAGGGCTATCGCCTCATTGGTCCCTCTCATGTAACCAATGGCCTGAAGGATGTTTTATGTTTGTTTGTGACAAAATGTTGTTTTAAATTGTCAATTTGTTTAATTGTTCATGAATCGGTTCATTCTTTCCCACCTGTCCTGAGGTTGGTTGTTTATAATTGCGTAGATTGAATTATTAAATATcttgtctttttttattttttattctcatttattttttcatttagAGGAATTCCACCACCTTTCCGTAAGTTGTGGTCTatataggggcggcaggtagtctagtggttagtgttgggccagtaaccgaacggTTGCTAGAttagatcccccgagctgacaaggtaaaacatcgtccgttctgcccctaaacaaggcagtttaacccactgttcctcggtaggccgtcattgtaaataagaatgtgttcttaactgacttgcctggttaaatataaGGGATGCCATTGGGAACAAACTAAGTTGTATACTGGAGATGATGAATGAGGTTTAACAGTGGTGGAATGTCCCCTTTTAATTAAACTGGTAGTACTACTTCTGGTGCACTGTGATTCCCTCTGACGCGTTACCATGGTGAGAGTGCACAACCatttttgctacacctgcaataacatctgctaaacgtgtgtatgtgacaaacCAAATGTGATTTGACTGTGATTCCCTCTGATGCGTTACCTGGGTTGTTCTGGTTTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035701.1 True 2536 mRNA 0.42 2 3382292 3385041

Neighbor

gene id symbol gene type direction distance location
LOC118938390 LOC106585183 coding downstream 11565 3353166 ~ 3370727 (-)
LOC110519358 LOC106564100 coding downstream 40565 3337677 ~ 3341727 (-)
LOC110514041 LOC106585204 coding downstream 184310 3161191 ~ 3197982 (-)
LOC118938425 NA coding downstream 219977 3161646 ~ 3162575 (-)
LOC110493360 LOC106564102 coding downstream 223454 3133003 ~ 3158838 (-)
LOC110487344 LOC106594449 coding upstream 2760 3387801 ~ 3406583 (-)
LOC110487174 LOC106594426 coding upstream 28981 3414022 ~ 3420121 (-)
LOC110487303 LOC106593981 coding upstream 123241 3508282 ~ 3513160 (-)
LOC110487308 LOC106595461 coding upstream 136644 3521685 ~ 3532141 (-)
LOC110517154 LOC106594599 coding upstream 148467 3533508 ~ 3554061 (-)
G1137412 NA non-coding downstream 15384 3366423 ~ 3366908 (-)
G1137435 NA non-coding downstream 46621 3334109 ~ 3335671 (-)
G1137394 NA non-coding downstream 99984 3258727 ~ 3282308 (-)
G1137444 NA non-coding upstream 10335 3395376 ~ 3395622 (-)
G1137461 NA non-coding upstream 55398 3440439 ~ 3447354 (-)
G1137483 NA non-coding upstream 82435 3467476 ~ 3467907 (-)
G1137487 NA non-coding upstream 86438 3471479 ~ 3471809 (-)
G1137472 LOC106594097 non-coding upstream 92664 3477705 ~ 3484262 (-)
G1137174 NA other downstream 251739 3129613 ~ 3130553 (-)
G1136948 NA other downstream 522251 2859031 ~ 2860041 (-)
G1136568 NA other downstream 859931 2521827 ~ 2522361 (-)
LOC118938509 LOC106564044 other downstream 867374 2507219 ~ 2518648 (-)
G1137666 NA other upstream 346580 3731621 ~ 3733300 (-)
G1137672 LOC106595836 other upstream 380241 3765282 ~ 3765816 (-)
G1138151 LOC106606801 other upstream 1009704 4394745 ~ 4421260 (-)
G1138232 NA other upstream 1234454 4619495 ~ 4620179 (-)

Expression


Co-expression Network