LOC110487178 (LOC106564112)


Basic Information

Item Value
gene id LOC110487178
gene name LOC106564112
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3487288 ~ 3492630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942248.1
CAGACCGCATGTCGGCGCTAAACCGGAAGTAGGAAGCCAACGAGAGTTTGACAGTTTATTTAAATGTACAACATTGTAACGTTAGCATTGCTATTTGTAAAAAAGAATACAGTAACTTTCGATTAAATATTCTCAGGTGTTGGTATTTCCCATCCTACATCCAACGATACGCGAGGTTACGACCTACAGCATTGGCAGTCATCATAAGTTAAAACTAAACTAGATTTATATCTTAATTtatcagttagctagctagctcagggATTGATTTACAATGGAAGAGGTAGTAATCTGAACATGTGCTAGCCACATCACTTTTCTGCTCTGCAAACTGCTCGTTTGTTGCTATACCAAATGGTGCGGCTAGCTTGCAAGTCGAGTTGCTCAACGCATGCTAGTAACAGCAGtactagctagctacgtttgtgTTGCTTGATGATGCGACTTTGTTTTCTAAACTCTGAAGACCCGTCCAGCCCGTCTCCATCTTGCTCCACCAAAACCCAACCCACGGTGTCCCCGGGTCCTGACAGGAACCATGGTGACCAGGAGGACAGTAACCATGGTGATCAGAAAGACACACCGCAGGGTCAGGAGAGGGTTACTGTGAGTCTGGACATCAACAGTGAAACACCAACATTTAATATCGTagtcaaagaagaagaagactggGAACTAGATAATACAGGAGAGAGTCCCAGCCATCACTCTGCAGCCGGGGAGAGTCCCTCTACATCAGGAGAACCTGAACAACACCAGATGAAACGCAGAACGAGGCAGAAAAAGACCCACCCATGCCCAGATTGTGGGAAACACTGCCAGACATTATCGGCACTACAAATACACATGAGaacccacacaggagagaagccttacaccTGCTCTGAGTGTGGGAAGGGCTTCACTCATCAGTGTAGTTTGAGATGCCACCACCTGAAGAAACACTCTGAACAGATTAAAACTGACCCGGATGACACGATTGGCTGCTGCTGTGGACAAGAGTTCTCTTCCAAGAATGTTCTGGAGGTTCACTTGAAGACAAACACTGGAGACAAGCCTTACACCTGCTGTGTGTGTAAGAAGACCTTTACTCATAAAGCATTACTGAAAGTACACCAGCGAtcccacacaggagagaagcctttctcttgctctctgtgtGAGAAGAGTTTTACTCAGAAAGGAAACTTGACAACACACGAGAAGTCGCACGCCGGAGAGAAACACCCTTGCTCagtctgtggaaagagtttcactCAGAAAGGCTATCTGAAGATTCATCAGCGGCTTCACTGTTCCGAAGGGGAGTTGAGTTCCTCTGTATCAAGAGCACTTGAACACCGACAGAGGAGAGCGAAGGCGACTCACAGATGCCCAGACTGTGGGAAGGAGTTCCCTCAAACATATTACCTGGACAGACAcatgagaacacacacaggagagaggcctTACCAGTGCTCTGTGTGTGGGATGAGTTTCACGCAGAAAGGAAATTTAAAAACGCATCAGAAAGTGCACACGGGAGATTATCCCAGCTCCTGGTCCACTGGTGAAGGGAGTCCCTGTACATCGGGAGAAGCGGAACAACACCAGGAGAACCACGCGGACGTCACATCTCACGGCTGCCTCGTGTGCGGCGAGGAACACTCTAACCTCCCAGAACTACACAAACACATGAGATCTCACACGGGAGAAAAGTGCCTCGCCTGCCCTGTGTGTGGCAAGACTTACCCCAGAGAATTTGACCTCAAAGTCCAcctcagaacacacacaggagagaaaccccaCGAGTGCATTGAATGCGGCAAGAGCTTCGTTCGTAAACAAGGGCTCCGGCAGCACCAGAGGACACATGACGCCAAGCCCATCGGACCGACCCGCCAGTTAGGCAGGCCAAAGCAGTTAACCAGGGCTCAAATGTCCAAGAAAGTGCCAAAGATGGAGAGTGACGCAGGACTGCCAGTACTATGACAATTAGCTGCAACTTTGTCTCTTAGTAGGTAGGGTTCTTCTCCCTGAAGCTGTGTCTGTGTTGTCGCCATCTCTGATCAGTTAGATAATCATGCTAACTCTCACTCATCTCATCAATCAACATATTATGATCaacaaaaagggggggggggggtcccttttttgggggggggggtcaattttTCATCAATGCTGTGATGGTGCTAAGAAATCAACAGTGACTTGTAGCCCACTTGTGAAATGTTCCTCACTGAGAATAACCATGTCATGATTAATAAAGTAGCATTCTGGTTATGGTTCCTGTTGTCTTTCCCTCCAGCTCAGATGGTGGCAGTAATGTCCAGGCAGGAGAGGACCTGAAGGACACAAGGAAATAGTcatgtagctagctaagctaACGTTGGATAAGCGGTTGTTTACGTTCTCACTTCACTGACTAACGTTAGCTTGCAACTAGCTAGCGTAACCTTTCTTTGAGCTGAACGCAACAAGGAAAGAACAACATTTTTGTTCTTCGTAGCAAAGCCAGCAACGGTGGATTAATGCAGGCACAGCGTCCTTCTCGAGATAATTTCGAGTTCATTCACAATGCAGGAGGTTAGCTAACGTCAGCTAAGTAGCTAACTGGTTGGAGCCATAGATATCCTATTAAATTACAAGAGGGGCTACGCcataaaccctcaaagttccaTAGTGGAGccaaaatggcagccatcttggtcagggagaaataCAAAACCAGTCTTAATTGGTATGAACGGCAGTAGGTGATGCATTTCCTGCTTTTACTgatgcaggaaaataaaagtaaggcaTGTGATGTATCAGAAATGGTGTCATAAATTACATTCAACCTAAAATGATTGGTTATAATTATAAATACCTGTTATACAGGTTTTATACAAATGTTCTGTATAAATTGTCTCTAAAATATTTGCAAACAGACCATAAAtgtctccatttttttttttattgggaaGCTGTGACTGCTATTATATCATACAATATtagtacttgttgcatttacaagTTGTCTAGTTAATTTAAACAATTGATGTAATCATTCCTGTAAAACTGCCTGGCTAGCGAGCTAACACATATACAGTGCAGATACATTCTTCACATTAGGTGAGATTCTACATGTTATTCTATGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTACATGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTGCATGTTATTCTATGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGAATCTACAAGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAGTTAGATTAGGTGAGATTCTACAAGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTGCATGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTGCACGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTGCACGTTATTCTGGGTGTAAGAACCTGTGACGGAAACCATGACTGCTAGACTGTAAGTCAGGTTTAGGGTCAATTtgaattgaaggcagtcaattcaggaagtgatttgaatGTAAAATGGAAAaactttatttaatttttttattcatCTTTTATTTTTCAACTTATTGAGAAGTCATTGAAAATAGATGCTTTTTCTTTCAATTATTGAATTGAAATGTCAGTTTACATCCTGAAAGGATTGACTTAAActcaaattgaccccaacccagGTGTAAGTGGTTATGAGTGACTGAAAGTCTGGTTTATCACACATAGTTTAGCACAGCTCAACATTAGTAACGCTACATCATGGAACACTTCGC
>XM_036942249.1
CAGACCGCATGTCGGCGCTAAACCGGAAGTAGGAAGCCAACGAGAGTTTGACAGTTTATTTAAATGTACAACATTGTAACGTTAGCATTGCTATTTGTAAAAAAGAATACAGTAACTTTCGATTAAATATTCTCAGGTGTTGGTATTTCCCATCCTACATCCAACGATACGCGAGGTTACGACCTACAGCATTGGCAGTCATCATAAGTTAAAACTAAACTAGATTTATATCTTAATTtatcagttagctagctagctcagggATTGATTTACAATGGAAGAGAACTCTGAAGACCCGTCCAGCCCGTCTCCATCTTGCTCCACCAAAACCCAACCCACGGTGTCCCCGGGTCCTGACAGGAACCATGGTGACCAGGAGGACAGTAACCATGGTGATCAGAAAGACACACCGCAGGGTCAGGAGAGGGTTACTGTGAGTCTGGACATCAACAGTGAAACACCAACATTTAATATCGTagtcaaagaagaagaagactggGAACTAGATAATACAGGAGAGAGTCCCAGCCATCACTCTGCAGCCGGGGAGAGTCCCTCTACATCAGGAGAACCTGAACAACACCAGATGAAACGCAGAACGAGGCAGAAAAAGACCCACCCATGCCCAGATTGTGGGAAACACTGCCAGACATTATCGGCACTACAAATACACATGAGaacccacacaggagagaagccttacaccTGCTCTGAGTGTGGGAAGGGCTTCACTCATCAGTGTAGTTTGAGATGCCACCACCTGAAGAAACACTCTGAACAGATTAAAACTGACCCGGATGACACGATTGGCTGCTGCTGTGGACAAGAGTTCTCTTCCAAGAATGTTCTGGAGGTTCACTTGAAGACAAACACTGGAGACAAGCCTTACACCTGCTGTGTGTGTAAGAAGACCTTTACTCATAAAGCATTACTGAAAGTACACCAGCGAtcccacacaggagagaagcctttctcttgctctctgtgtGAGAAGAGTTTTACTCAGAAAGGAAACTTGACAACACACGAGAAGTCGCACGCCGGAGAGAAACACCCTTGCTCagtctgtggaaagagtttcactCAGAAAGGCTATCTGAAGATTCATCAGCGGCTTCACTGTTCCGAAGGGGAGTTGAGTTCCTCTGTATCAAGAGCACTTGAACACCGACAGAGGAGAGCGAAGGCGACTCACAGATGCCCAGACTGTGGGAAGGAGTTCCCTCAAACATATTACCTGGACAGACAcatgagaacacacacaggagagaggcctTACCAGTGCTCTGTGTGTGGGATGAGTTTCACGCAGAAAGGAAATTTAAAAACGCATCAGAAAGTGCACACGGGAGATTATCCCAGCTCCTGGTCCACTGGTGAAGGGAGTCCCTGTACATCGGGAGAAGCGGAACAACACCAGGAGAACCACGCGGACGTCACATCTCACGGCTGCCTCGTGTGCGGCGAGGAACACTCTAACCTCCCAGAACTACACAAACACATGAGATCTCACACGGGAGAAAAGTGCCTCGCCTGCCCTGTGTGTGGCAAGACTTACCCCAGAGAATTTGACCTCAAAGTCCAcctcagaacacacacaggagagaaaccccaCGAGTGCATTGAATGCGGCAAGAGCTTCGTTCGTAAACAAGGGCTCCGGCAGCACCAGAGGACACATGACGCCAAGCCCATCGGACCGACCCGCCAGTTAGGCAGGCCAAAGCAGTTAACCAGGGCTCAAATGTCCAAGAAAGTGCCAAAGATGGAGAGTGACGCAGGACTGCCAGTACTATGACAATTAGCTGCAACTTTGTCTCTTAGTAGGTAGGGTTCTTCTCCCTGAAGCTGTGTCTGTGTTGTCGCCATCTCTGATCAGTTAGATAATCATGCTAACTCTCACTCATCTCATCAATCAACATATTATGATCaacaaaaagggggggggggggtcccttttttgggggggggggtcaattttTCATCAATGCTGTGATGGTGCTAAGAAATCAACAGTGACTTGTAGCCCACTTGTGAAATGTTCCTCACTGAGAATAACCATGTCATGATTAATAAAGTAGCATTCTGGTTATGGTTCCTGTTGTCTTTCCCTCCAGCTCAGATGGTGGCAGTAATGTCCAGGCAGGAGAGGACCTGAAGGACACAAGGAAATAGTcatgtagctagctaagctaACGTTGGATAAGCGGTTGTTTACGTTCTCACTTCACTGACTAACGTTAGCTTGCAACTAGCTAGCGTAACCTTTCTTTGAGCTGAACGCAACAAGGAAAGAACAACATTTTTGTTCTTCGTAGCAAAGCCAGCAACGGTGGATTAATGCAGGCACAGCGTCCTTCTCGAGATAATTTCGAGTTCATTCACAATGCAGGAGGTTAGCTAACGTCAGCTAAGTAGCTAACTGGTTGGAGCCATAGATATCCTATTAAATTACAAGAGGGGCTACGCcataaaccctcaaagttccaTAGTGGAGccaaaatggcagccatcttggtcagggagaaataCAAAACCAGTCTTAATTGGTATGAACGGCAGTAGGTGATGCATTTCCTGCTTTTACTgatgcaggaaaataaaagtaaggcaTGTGATGTATCAGAAATGGTGTCATAAATTACATTCAACCTAAAATGATTGGTTATAATTATAAATACCTGTTATACAGGTTTTATACAAATGTTCTGTATAAATTGTCTCTAAAATATTTGCAAACAGACCATAAAtgtctccatttttttttttattgggaaGCTGTGACTGCTATTATATCATACAATATtagtacttgttgcatttacaagTTGTCTAGTTAATTTAAACAATTGATGTAATCATTCCTGTAAAACTGCCTGGCTAGCGAGCTAACACATATACAGTGCAGATACATTCTTCACATTAGGTGAGATTCTACATGTTATTCTATGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTACATGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTGCATGTTATTCTATGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGAATCTACAAGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAGTTAGATTAGGTGAGATTCTACAAGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTGCATGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTGCACGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTGCACGTTATTCTGGGTGTAAGAACCTGTGACGGAAACCATGACTGCTAGACTGTAAGTCAGGTTTAGGGTCAATTtgaattgaaggcagtcaattcaggaagtgatttgaatGTAAAATGGAAAaactttatttaatttttttattcatCTTTTATTTTTCAACTTATTGAGAAGTCATTGAAAATAGATGCTTTTTCTTTCAATTATTGAATTGAAATGTCAGTTTACATCCTGAAAGGATTGACTTAAActcaaattgaccccaacccagGTGTAAGTGGTTATGAGTGACTGAAAGTCTGGTTTATCACACATAGTTTAGCACAGCTCAACATTAGTAACGCTACATCATGGAACACTTCGC
>TU1295836
gggaaGCTGTGACTGCTATTATATCATACAATATtagtacttgttgcatttacaagTTGTCTAGTTAATTTAAACAATTGATGTAATCATTCCTGTAAAACTGCCTGGCTAGCGAGCTAACACATATACAGTGCAGATACATTCTTCACATTAGGTGAGATTCTACATGTTATTCTATGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTACATGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTGCATGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTGCACGTTATTCTGGGTGTAACTCACAGAGATCCTATTCAATTAGATTAGGTGAGATTCTGCACGTTATTCTGGGTGTAAGAACCTGTGACGGAAACCATGACTGCTAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942248.1 False 3887 mRNA 0.43 4 3487288 3492630
XM_036942249.1 False 3714 mRNA 0.43 4 3487288 3492630
TU1295836 True 451 lncRNA 0.37 2 3491689 3492316

Neighbor

gene id symbol gene type direction distance location
LOC110487325 LOC106594105 coding upstream 1161 3480723 ~ 3486127 (+)
LOC110487172 LOC106594097 coding upstream 6784 3476389 ~ 3480504 (+)
LOC110487312 LOC106564095 coding upstream 18217 3462510 ~ 3469071 (+)
LOC110487170 LOC106595548 coding upstream 25911 3445961 ~ 3461377 (+)
LOC110487307 LOC106564094 coding upstream 42861 3420134 ~ 3444427 (+)
LOC110487323 LOC106596349 coding downstream 2395 3495025 ~ 3504014 (+)
LOC110511518 LOC106594655 coding downstream 61515 3554145 ~ 3564093 (+)
LOC118938406 LOC106564118 coding downstream 92827 3585457 ~ 3597076 (+)
LOC118938142 NA coding downstream 118432 3611062 ~ 3631920 (+)
LOC110485340 LOC106595544 coding downstream 140070 3632700 ~ 3671159 (+)
G1137279 NA non-coding upstream 13736 3473170 ~ 3473552 (+)
G1137277 NA non-coding upstream 19375 3467182 ~ 3467913 (+)
G1137221 NA non-coding upstream 46304 3382264 ~ 3440984 (+)
G1137263 NA non-coding upstream 54853 3431527 ~ 3432435 (+)
G1137230 LOC106564091 non-coding upstream 80822 3404073 ~ 3406466 (+)
G1137287 LOC106595000 non-coding downstream 17121 3509751 ~ 3523300 (+)
G1137308 NA non-coding downstream 50613 3543243 ~ 3545232 (+)
G1137320 NA non-coding downstream 74800 3567430 ~ 3567891 (+)
G1137322 LOC106564116 non-coding downstream 80907 3573537 ~ 3577467 (+)
G1137326 NA non-coding downstream 88072 3580702 ~ 3581095 (+)
G1137280 LOC106594097 other upstream 2611 3477294 ~ 3484677 (+)
LOC118938403 LOC106594722 other upstream 498544 2967768 ~ 2990229 (+)
G1136973 NA other upstream 553280 2933674 ~ 2934008 (+)
G1136726 LOC106564030 other upstream 595014 2879219 ~ 2892274 (+)
G1136713 LOC106594712 other upstream 676789 2795877 ~ 2835865 (+)
LOC110485341 gtf3c1 other downstream 186193 3677684 ~ 3770907 (+)
G1137718 NA other downstream 445870 3938500 ~ 3941881 (+)
LOC110514884 LOC106564142 other downstream 532088 4024672 ~ 4054476 (+)
G1137801 NA other downstream 670630 4163260 ~ 4166268 (+)
LOC118936517 LOC106564285 other downstream 732021 4224650 ~ 4232279 (+)

Expression

LOC110487178(LOC106564112) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110487178(LOC106564112) Expression in each Bioproject

Bar chart with 21 bars.
LOC110487178(LOC106564112) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network