LOC110487308 (LOC106595461)


Basic Information

Item Value
gene id LOC110487308
gene name LOC106595461
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3521685 ~ 3532141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942179.1
TCAAACTGCTGCCATCAAAACAGACTGGGTTGAAAGCAAGACTTATCTAAACCATCTTTGGTCAAAAAGTAAACAAGAGAACACGTCGGAGGGAAACGTCACACAGACGATATGATTAAAAGCATCCAGGTTCTCTAAAGTCCTGCCATTGACTGCATTGTCGTTGTTGCCACACGAGCAGAACAATATGAATCCACTCAGTTCAGAGAAGGAAACATTGATGGATGACATTGAACAGAGTTTATTCACTTTAACCGTGGACAATTTACGCTACCTGTGTGAACGTCATGGCAAAGATGGCTCTGAAATTAAAGGGATGAATCATCGCTTATTAAGGCGTAGAATCATGGAGGAAATGTGGGACAATACGGAGTCAATGAAATCAGAGGAGCAGGGAATGTCTTGGTTAGTCCAACTGAAAGAGGACATCAGGAGGATGCTGGAGGATGCTAGTGGGGCACCAATGAGTCCCAGCcagtctgatgatgatgatgatgctgtagACTGTGATGAAGAATGCGACAAGGAGGACAGCGATTGGTTGCCTAGCAATGGACTGAAGGCGGAACACTTGAGTTCCAGCCGATCCGATGATGACGCTGCAGACTGCGACAAAGACTCGGACGTGGAGGAAAAGGATTGGTTGGCTAGCGATGGGCTGGAGGCAGAGTCAGATCCAGAGAGGCACACTCCAGAGCAGAGAGTAAGAGAGAACAAGCTTCCCACGTCACCCTCCGCCCTCCTGAAGTCCCCAGGTCGTGCCTCTCCCAGTAGCGTATTACTGCTGGGTCTGAAGAGGGTGTCTGTGAGGCTGGTCGACTGCAGGAAGACACCGGGGCAGAGTACCCATATAATACACAAGACAACACAGACGGGAGAGAAACCCCACAGCTGGTCTAATGCTGAACAACACAAAACCCTCTCAGGAGACAGGCCTGGCTCCCATATCTGTGATCACTGTGGGAAGAATTTTACCACAGCAAGAAGTCtacaactacacatacagtatctgAAGAGATACAGAGATAATTTGACTGGAGAGAAACCACACGTGTGCTCTACATGCGGAAAGGGATTCAGTGAGGCTGGCAGTCTTAAGAGACACCTGAGAACTCATACGGGGGAGAAACCGTACGTTTGCCATCATTGTGGGAAGGCTTGGAGTGATTCTGGAAACTTAAGGAGACACATGAGAAAAACTCACCCAGGAGAGAAGGTCGTTGTGAAGAGCGTCcttacaggagagaaaccttaccatTGCTCCTCTGACGACTGTGGGATGAGCTTCGTTACCTCACGCAAACGCAGAGTacaccagagaaaacacacaaGAGAGAAGCTTCGCAGCACACCTAATGCTAAGCAACGTAAGGAACCCCTCTCAGGAGATGGCTTCCATATCTGTGATCACTGTGGGAAGAATTTTATCACAGCACGAAGTCTAAAACGACACTTACAGTACCTGAAGAGATACAGAGATAACTTGACTGGAGAGAAACCACACGTGTGCTCTACATGCGGAAAGGGATTCAGTGAGGCTGGCAGTCTTAAGAGACACCTGAGAACTCATACTGGGGAGAAACCGTACGTCTGCCATCATTGTGGGAAGAACTACAATGATTCTGGAAACTTGCAGAGACACATCAGGACTcacacaggtgagaaaccttaccactgctcGGAATGTGGTAGGAATTTTCGTGAAAAAATAAGCCTTGTACATCACCGGGAAGTTGTTCACACAGACCACCCTCACCGCTGTGCTCACTGTATAAAGAGCTTCGTAAGTGAATCTAAACTGGAATCGCACATGCAAACCCGGCATCCACCAAATGATCCTCTGAAAAAGCCACACGTGTGCTCTGAATGTGGAAGGGGTTTCAGTGAGGCCGGTAGTCTTAAAAGACACGTGAGAATCCATACCGGGGAGAAACCATACGTCTGCCCTCGTTGCGGTAAGGATTTTACTCAATCTGGACTCTTACAGAGACACATGagaactcacacaggagagacgCCTTACCACTGCTTGATGTGCGGGATGAAGTTTCGCCATACAATCTCGCTAAAGCAGCACCACCTGAAGAACCACAAGGGGGAGACACTGGGTCCAGTCCGTATGCACCAAGGCCCTCTTCCATGCCCCCACTGTGGGGAGAAGTTCTCTACCAAGGCTCTTCTGAAGGATCACCTGCAGAAGACCCACAACAGCCGTGTCCACTGTCCACAGTGCGACAAGACCTTCTCCACTAAAGGTAGTTTACTAGTCCACCAGAGGAAGCACACTGGAGAGAGGCCTTACCTTTGccctcagtgtgggaagagtttctcccTGACAGGGAGTTTAAAACTTCATCTCCGGATTCATGCGGGTGAGAAACCTTACTGCTGTACTTACTGTGACAAGAGCTTCACAAGTAAGAGCCACTGCATTCTACACCTGCGAatccacactggagagaaaccgtaCCAATGCCTTGACTGCGGGAGGAGGTTTCGTGATGGGAATGTCTTGAAAAACCACCGGCGgacccacacaggagagaaaccgttcCAGTGCCACGTGTGTGATAAAGCCTTCGCCCAGTGGAGCAGTCTGAAGAAACATCAGGACACACACAGGCTAACACAGCCTGTCTCTATCCCAAGACTCCCTAATCCCTACCTACCACCCAATCAGCATGTCCCTTATCCCTACCCATCACAGACTCAATGGTAACCTGGTTTATCACCTGTCCAATCCCTTATAGAGGGATTCCTTACGATACCCAGACAGAAAAATACCAAGATTTGGGGGAAATTCACAAAATATAATCCATAGAATAAAACattaacaccttcctaatattgagttgcaccccatttttccctcagaacatcctcagtttgttgggacatggactctacaaggtgtggaaagcgtttccacagggatgctggcccatgtcgactccaatgctttccacagttgtgtccagttggctggatgtcctttgggtggtggaccgttcttgatacacacaggaaactgtatGACAAACCCCGAAGCGTTGCAGTCCTTGACAATAGGTGTAGCCTGGCACCTATTACCTAccacaccccgttcaaaggcacttcaatcttttgtgcGACactgcactaagatgcagtgtcttagaccactgctccacttgGGAGCCCCTGAGCCCTGTTTCATAAAATGGGCTTAACTTTAAAACTAGGAGAGCTTCCACTCTGGAACCGTGATATGCTTATAGAGTATATTATGTTCAACTatataaatatacactgctccaaggagtggttctgcaggtgacaaccaaagaccacttctcagttcctatgcttatATTATGTACAACTggatacatatatatacactacgtttcaaaagtttggggtcacttagaaatgtcctttgtttaaaaaaaaaaaaaaaaagcacattgttcattaaaataacatcaaatggatTGTAATGGATTCTTTAGAcacgttgagtatctggagcatcagcatttgtgggtttgattacaggctcaaaatgggcagaaacaaataactttcttcttaaACTCATTCTTGTCTATTCTtgatctgagaaatgaaggctattccatgcgagaaattccCAAGaatctgaagatctcgtacaacactgtgtactactcccttcacagaacagcgcaaactggccctaaccagaatagaaa
>XM_036942181.1
TCAAACTGCTGCCATCAAAACAGACTGGGTTGAAAGCAAGACTTATCTAAACCATCTTTGGTCAAAAAGTAAACAAGAGAACACGTCGGAGGGAAACGTCACACAGACGATATGATTAAAAGCATCCAGGTTCTCTAAAGTCCTGCCATTGACTGCATTGTCGTTGTTGCCACACGAGCAGAACAATATGAATCCACTCAGTTCAGAGAAGGAAACATTGATGGATGACATTGAACAGAGTTTATTCACTTTAACCGTGGACAATTTACGCTACCTGTGTGAACGTCATGGCAAAGATGGCTCTGAAATTAAAGGGATGAATCATCGCTTATTAAGGCGTAGAATCATGGAGGAAATGTGGGACAATACGGAGTCAATGAAATCAGAGGAGCAGGGAATGTCTTGGTTAGTCCAACTGAAAGAGGACATCAGGAGGATGCTGGAGGATGCTAGTGGGGCACCAATGAGTCCCAGCcagtctgatgatgatgatgatgctgtagACTGTGATGAAGAATGCGACAAGGAGGACAGCGATTGGTTGCCTAGCAATGGACTGAAGGCGGAACACTTGAGTTCCAGCCGATCCGATGATGACGCTGCAGACTGCGACAAAGACTCGGACGTGGAGGAAAAGGATTGGTTGGCTAGCGATGGGCTGGAGGCAGAGTCAGATCCAGAGAGGCACACTCCAGAGCAGAGAAACAAGCTTCCCACGTCACCCTCCGCCCTCCTGAAGTCCCCAGGTCGTGCCTCTCCCAGTAGCGTATTACTGCTGGGTCTGAAGAGGGTGTCTGTGAGGCTGGTCGACTGCAGGAAGACACCGGGGCAGAGTACCCATATAATACACAAGACAACACAGACGGGAGAGAAACCCCACAGCTGGTCTAATGCTGAACAACACAAAACCCTCTCAGGAGACAGGCCTGGCTCCCATATCTGTGATCACTGTGGGAAGAATTTTACCACAGCAAGAAGTCtacaactacacatacagtatctgAAGAGATACAGAGATAATTTGACTGGAGAGAAACCACACGTGTGCTCTACATGCGGAAAGGGATTCAGTGAGGCTGGCAGTCTTAAGAGACACCTGAGAACTCATACGGGGGAGAAACCGTACGTTTGCCATCATTGTGGGAAGGCTTGGAGTGATTCTGGAAACTTAAGGAGACACATGAGAAAAACTCACCCAGGAGAGAAGGTCGTTGTGAAGAGCGTCcttacaggagagaaaccttaccatTGCTCCTCTGACGACTGTGGGATGAGCTTCGTTACCTCACGCAAACGCAGAGTacaccagagaaaacacacaaGAGAGAAGCTTCGCAGCACACCTAATGCTAAGCAACGTAAGGAACCCCTCTCAGGAGATGGCTTCCATATCTGTGATCACTGTGGGAAGAATTTTATCACAGCACGAAGTCTAAAACGACACTTACAGTACCTGAAGAGATACAGAGATAACTTGACTGGAGAGAAACCACACGTGTGCTCTACATGCGGAAAGGGATTCAGTGAGGCTGGCAGTCTTAAGAGACACCTGAGAACTCATACTGGGGAGAAACCGTACGTCTGCCATCATTGTGGGAAGAACTACAATGATTCTGGAAACTTGCAGAGACACATCAGGACTcacacaggtgagaaaccttaccactgctcGGAATGTGGTAGGAATTTTCGTGAAAAAATAAGCCTTGTACATCACCGGGAAGTTGTTCACACAGACCACCCTCACCGCTGTGCTCACTGTATAAAGAGCTTCGTAAGTGAATCTAAACTGGAATCGCACATGCAAACCCGGCATCCACCAAATGATCCTCTGAAAAAGCCACACGTGTGCTCTGAATGTGGAAGGGGTTTCAGTGAGGCCGGTAGTCTTAAAAGACACGTGAGAATCCATACCGGGGAGAAACCATACGTCTGCCCTCGTTGCGGTAAGGATTTTACTCAATCTGGACTCTTACAGAGACACATGagaactcacacaggagagacgCCTTACCACTGCTTGATGTGCGGGATGAAGTTTCGCCATACAATCTCGCTAAAGCAGCACCACCTGAAGAACCACAAGGGGGAGACACTGGGTCCAGTCCGTATGCACCAAGGCCCTCTTCCATGCCCCCACTGTGGGGAGAAGTTCTCTACCAAGGCTCTTCTGAAGGATCACCTGCAGAAGACCCACAACAGCCGTGTCCACTGTCCACAGTGCGACAAGACCTTCTCCACTAAAGGTAGTTTACTAGTCCACCAGAGGAAGCACACTGGAGAGAGGCCTTACCTTTGccctcagtgtgggaagagtttctcccTGACAGGGAGTTTAAAACTTCATCTCCGGATTCATGCGGGTGAGAAACCTTACTGCTGTACTTACTGTGACAAGAGCTTCACAAGTAAGAGCCACTGCATTCTACACCTGCGAatccacactggagagaaaccgtaCCAATGCCTTGACTGCGGGAGGAGGTTTCGTGATGGGAATGTCTTGAAAAACCACCGGCGgacccacacaggagagaaaccgttcCAGTGCCACGTGTGTGATAAAGCCTTCGCCCAGTGGAGCAGTCTGAAGAAACATCAGGACACACACAGGCTAACACAGCCTGTCTCTATCCCAAGACTCCCTAATCCCTACCTACCACCCAATCAGCATGTCCCTTATCCCTACCCATCACAGACTCAATGGTAACCTGGTTTATCACCTGTCCAATCCCTTATAGAGGGATTCCTTACGATACCCAGACAGAAAAATACCAAGATTTGGGGGAAATTCACAAAATATAATCCATAGAATAAAACattaacaccttcctaatattgagttgcaccccatttttccctcagaacatcctcagtttgttgggacatggactctacaaggtgtggaaagcgtttccacagggatgctggcccatgtcgactccaatgctttccacagttgtgtccagttggctggatgtcctttgggtggtggaccgttcttgatacacacaggaaactgtatGACAAACCCCGAAGCGTTGCAGTCCTTGACAATAGGTGTAGCCTGGCACCTATTACCTAccacaccccgttcaaaggcacttcaatcttttgtgcGACactgcactaagatgcagtgtcttagaccactgctccacttgGGAGCCCCTGAGCCCTGTTTCATAAAATGGGCTTAACTTTAAAACTAGGAGAGCTTCCACTCTGGAACCGTGATATGCTTATAGAGTATATTATGTTCAACTatataaatatacactgctccaaggagtggttctgcaggtgacaaccaaagaccacttctcagttcctatgcttatATTATGTACAACTggatacatatatatacactacgtttcaaaagtttggggtcacttagaaatgtcctttgtttaaaaaaaaaaaaaaaaagcacattgttcattaaaataacatcaaatggatTGTAATGGATTCTTTAGAcacgttgagtatctggagcatcagcatttgtgggtttgattacaggctcaaaatgggcagaaacaaataactttcttcttaaACTCATTCTTGTCTATTCTtgatctgagaaatgaaggctattccatgcgagaaattccCAAGaatctgaagatctcgtacaacactgtgtactactcccttcacagaacagcgcaaactggccctaaccagaatagaaa
>TU1296158
AAACAGACTGGGTTGAAAGCAAGACTTATCTAAACCATCTTTGGTCAAAAAGTAAACAAGAGAACACGTCGGAGGGAAACGTCACACAGACGATATGATTAAAAGCATCCAGGTTCTCTAAAGTCCTGCCATTGACTGCATTGTCGTTGTTGCCACACGAGCAGAACAATATGAATCCACTCAGTTCAGAGAAGGAAACATTGATGGATGACATTGAACAGAGTTTATTCACTTTAACCGTGGACAATTTACGCTACCTGTGTGAACGTCATGGCAAAGATGGCTCTGAAATTAAAGGGATGAATCATCGCTTATTAAGGCGTAGAATCATGGAGGAAATGTGGGACAATACGGAGTCAATGAAATCAGAGGAGCAGGGAATGTCTTGGTTAGTCCAACTGAAAGAGGACATCAGGAGGATGCTGGAGGATGCTAGTGGGGCACCAATGAGTCCCAGCcagtctgatgatgatgatgatgctgtagACTGTGATGAAGAATGCGACAAGGAG

Function

NR:

description
uncharacterized protein LOC109880412

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942179.1 False 3713 mRNA 0.47 3 3521685 3532141
XM_036942181.1 False 3704 mRNA 0.47 3 3521685 3532141
TU1296158 True 512 TUCP 0.44 2 3528439 3532124

Neighbor

gene id symbol gene type direction distance location
LOC110487303 LOC106593981 coding downstream 8525 3508282 ~ 3513160 (-)
LOC110487174 LOC106594426 coding downstream 101564 3414022 ~ 3420121 (-)
LOC110487344 LOC106594449 coding downstream 115102 3387801 ~ 3406583 (-)
LOC118938420 NA coding downstream 136644 3382292 ~ 3385041 (-)
LOC118938390 LOC106585183 coding downstream 150958 3353166 ~ 3370727 (-)
LOC110517154 LOC106594599 coding upstream 1367 3533508 ~ 3554061 (-)
LOC110524887 LOC106564116 coding upstream 40821 3572962 ~ 3584380 (-)
LOC118938144 NA coding upstream 166603 3698309 ~ 3705039 (-)
LOC118938145 NA coding upstream 169405 3701546 ~ 3702061 (-)
LOC118938513 LOC106595758 coding upstream 316551 3848692 ~ 3891054 (-)
G1137506 NA non-coding downstream 15332 3505633 ~ 3506353 (-)
G1137472 LOC106594097 non-coding downstream 37423 3477705 ~ 3484262 (-)
G1137470 LOC106564092 non-coding downstream 41301 3479067 ~ 3480384 (-)
G1137487 NA non-coding downstream 49876 3471479 ~ 3471809 (-)
G1137483 NA non-coding downstream 53778 3467476 ~ 3467907 (-)
G1137527 NA non-coding upstream 18412 3550553 ~ 3551804 (-)
G1137528 NA non-coding upstream 24809 3556950 ~ 3557949 (-)
G1137542 NA non-coding upstream 65220 3597361 ~ 3598381 (-)
G1137543 NA non-coding upstream 66636 3598777 ~ 3600123 (-)
LOC110514041 LOC106585204 other downstream 333501 3161191 ~ 3197982 (-)
G1137174 NA other downstream 391132 3129613 ~ 3130553 (-)
G1136948 NA other downstream 661644 2859031 ~ 2860041 (-)
G1136568 NA other downstream 999324 2521827 ~ 2522361 (-)
LOC118938509 LOC106564044 other downstream 1006767 2507219 ~ 2518648 (-)
G1137666 NA other upstream 199480 3731621 ~ 3733300 (-)
G1137672 LOC106595836 other upstream 233141 3765282 ~ 3765816 (-)
G1138151 LOC106606801 other upstream 862604 4394745 ~ 4421260 (-)
G1138232 NA other upstream 1087354 4619495 ~ 4620179 (-)
G1138568 NA other upstream 1626024 5158165 ~ 5162954 (-)

Expression


Co-expression Network