LOC110517154 (LOC106594599)


Basic Information

Item Value
gene id LOC110517154
gene name LOC106594599
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3533508 ~ 3554061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942177.1
CGCTCGACTGGTTTGGGCTGAAAGGGAAAACCAATCGAGCAGGAAGCGATGATCGATCAGCAGCATGGAAACCTTGAAACGTGTGAGGCGAAGCAGGAAATCTTCACAAAACAGATTGACCCACTACGAGTTTGAGTCACAACAACGAGCCAACCAACACAGCTGCTGACGttcatgagaacttgttctcagagCTACAACCTTCCTACATCCAACCTGGTTCTCCCCGTAAGCACATGGAGCCACAAGTCTGTCTCAAGAGAAAGAGGGAACCTTCCCCAACACCAGAGAGCAGTaaaacagtgaaagagacaggtgGTAACAGAGTTCCAGAGTCTGAGCACCGTTCCGGTTCCCGACCCCCGCGGCTCTCTCTGCCGTTTGACCGTCTCCAGGAACCGGTCACGTTGAAAGATCTGACGGAACTGCTTCAGTTTGCTGCTCTGGGGAACACCGGGGGGCTGAAACAACCcagTTGGTGTCGCCTCCACCACCAGAAGAATGTGTCAGGGGTGAGCGTGATCCTTCTAGAAGGACTGAGCCAGGCTCACTTCTACAGACACTACCTGCACTTTAAACACCTCCGCACCAAGTACACCTCTAGACACAGTTATACTCCATCGCCTGGCAACATGATTTCTGAGATATTTAGCAGTGAAGTTGTCAACAACAGTCCTGCCGATGCGCTAGGAGACCAGAAGAGCGCTCAGCCAGAGGGAGgtctgcaGTGGCACCCAGTGATCAGGAAGTTTGGTCTGGAGACCAGAGGGCTGACTGGATACCTCCTCACCCAGGAGGAGATGATCAAGAAACACTTCCCTGTCCGCGGTATGCCTGGCAGTGAGGGCTTTGTGTGTACAGACAGTGACGACTGTGTGACTGACAGTAGTCCTCTCTATGGGCTGGACTGTGAGATGtgtctgACAGAATGTGGCAACGAGCTGACACGCATCTCTCTAgtagacagcagagggagctgtGTTCTGGACGAGCTGGTCAAACCTCCCAACCGCATCCTACACTACCTTACACAGTTCTCTGGTATCACCCGTGCAATGCTGCAGCCAATCACCACCACCCTGAGAGAAGTCCAATCAAAGCTCAAGAAAGTGTTGCCCCGGGACGCGGTCCTGGTTGGCCACTCCCTTGAGAACGACCTCGTGGCCCTGAACCTGATCCACCCCCATGTGATTGACACCTCCCTGCTGTACAGGAGAGAGTTTGGACGGAGGTTTAAACTCAAGGTGCTGGCTGAGACTGTGCTCAAGAAGCAGATCCagacggaggagaggaaaggtCATGACCCCACAGAGGACGCCCAGGCTGCCCTGGAACTGGCCCAGTACTTCATACACACTGGACCACGacagGTAGTAGAGCTGTATTGTGAAGAGCTGTGGGGTGGGAGTCCTACCATGTACCAGCCTCCTGTCAACAGAGCAacatctacacacaacaacaacaacagCTCTCTCAGGTTCGCCGAGGCCCTGAAGAGTTCTGGCCAATCAGCCGTGTTTATAGGGAAGCGTGCTGACAACACCCTGGATCTGGCCAATCAGCAGTGGCACAGCTCAGACAGAGAGGTCTTGTCTTCCTTTAAAAGAGGACTAGACTCTCACTCGTTCAGCGTTGTCCAGTTGTCTTCCTTCTCTGACCATCTGAAGGCTATGATCTCTACTGACCAGCACTACCACACGATGTCTCAGCGtctgagagagatgtgtgtggtGTTTGCAGGGCCGTTGCCTAGCGACTACACAGAGAGGGCTGTGAGGAGGCTGTTCAGCAGCTGTGGAACCGTACGAGCTGTCAGGCTGTTGAACACTACTCAGAGGGTGCATGCAGAGGTAGAGTTTGAGCTGCTGGAGGGAGCTGTGCTGGCTGTCGAGATGCTCAACGGAACACTGCTACACAGCGGACACATCGTCAAGGTCCAGAGACCTGTAAAGGAGTCCATGTTGGATCTGGACGTCTTTCTGAGTTCCCTGCAGGATGACCCGCTAAATGCTAACGTCATCTACGCCGCAGGGCTAAAGGCTAATGCTAAAACAGCACAGTTTGCAGCCAAAGTCAATGGGACTGGGCTAAATGCTAATGCAGCAGCTGAAGTCAATGAGACTGGGCTAAATGCTAACATAGCAGCACTCCCAGCTAAGGTCAATAGAGCTAGGCTACATGCTAAAGCGAACCATTCGGGGCTCTTAGAGAAAGTCAATGGAACTTTTCTAAATGCTAAAGCTAAGCTAGCTGAAGCGAATGGACCTGGGCTACATGCTAAAGCTAAATTTGCTAAGCTAGCAGAGCTCTCAGTTGAAGTCAATGGCACTCTGCTCCAAGTGAAAACTATGCTAGCAGAGATAGCAGCCGAAGCCAATGTTGGAGCGAGGCTCCATGCTAAGACTGCCGGACTCTGTGAAGAGGACCTCCGCGAGGCCTTCGGACAGTACGGAACGGTTCAGGGCGTAATTCTACCTGCAAAGCACTCTGGAAAACAGAAACGTAGGAGACATGCTTTCTTAAAGTATGATAGTCCTGACACTGTGGACGCGGTCCTCAGCTCACCTGTGGAACTCTGGGACAGGAAGGTGAGCACTCGCAGAGCCCTAACTCCGCCCCACCTGTGCTCCTGGGTTACTATGACGACGACGACTGGGTCCGACAGAGAAACACTGGACGAGTCGTCGCAGGAAAccggaagagaggaacaggaagtggCGTGCGTGATGAGGAAGTTGGACCGGCGCGTGGGGAAGCTGTTCAGATCTCTACCTGACAACACCCTCAGCATCGTACTGCTGCCTGGTCACAACAGTTCCCATGGCGATGGTCTGTGTTTCCTGGAGGTCAAACAGGGGTCAGCAGCACTCAGTGACCACGCCCCCGACCTGATGCTACCTGCATAGGGTACCTTCCCAAGATTCCCAGGAATCCAGTTCCTTCCCAAGATTCCCAGAAATTCCGGTTGGAAGATTCTGGATTTCTTGCTTACTCCCTCCTGATTTCGTGAATCTTCCAAACGGGACATTTTGAGAAAGTTAACAGATGTTGGCAACACTTCGCCTGCGATACTGTGTTTTACCATCTTGGTGTGCTGTAGCCCAGCAGTGCTACAACTTGACTAACAAAGACAGCTCTAGGCTACGAGAGTATTAAGTCATGTTTTAAATAAAGAGGTGAGTCTACCTACGAGTGCTTGATATGTTTCGTTCAGTACAGGCTGGACAGGGTTTTGGACACAGGCAATGTGTCTgatatgacaccctattccctatgtagtgtgcaCTAtggccaccctattccctatgtagtgtgcagcctattccctatgtagtgtgcaCTATGGGCAggctattccctatgtagtgtgcaCTATGGGCACACCATGGGTCCTGGCAAAACTCTCTACAGGGAttattagggtgccattttggacgtaaACTCACTGTTTGACCTGTATTGCTGCTTCTGATCCGAATCACATGATGCCTTGTGTCGTCTTTATCATGTCCatctaataaacaggtgattgttGTTAA
>XM_036942178.1
CGCTCGACTGGTTTGGGCTGAAAGGGAAAACCAATCGAGCAGGAAGCGATGATCGATCAGCAGCATGGAAACCTTGAAACGTGTGAGGCGAAGCAGGAAATCTTCACAAAACAGATTGACCCACTACGAGTTTGAGTCACAACAACGAGCCAACCAACACAGCTGCTGACGttcatgagaacttgttctcagagCTACAACCTTCCTACATCCAACCTGGTTCTCCCCGTAAGCACATGGAGCCACAAGTCTGTCTCAAGAGAAAGAGGGAACCTTCCCCAACACCAGAGAGCAGTaaaacagtgaaagagacaggtgGTAACAGAGTTCCAGAGTCTGAGCACCGTTCCGGTTCCCGACCCCCGCGGCTCTCTCTGCCGTTTGACCGTCTCCAGGAACCGGTCACGTTGAAAGATCTGACGGAACTGCTTCAGTTTGCTGCTCTGGGGAACACCGGGGGGCTGAAACAACCcagTTGGTGTCGCCTCCACCACCAGAAGAATGTGTCAGGGGTGAGCGTGATCCTTCTAGAAGGACTGAGCCAGGCTCACTTCTACAGACACTACCTGCACTTTAAACACCTCCGCACCAAGTACACCTCTAGACACAGTTATACTCCATCGCCTGGCAACATGATTTCTGAGATATTTAGCAGTGAAGTTGTCAACAACAGTCCTGCCGATGCGCTAGGAGACCAGAAGAGCGCTCAGCCAGAGGGAGgtctgcaGTGGCACCCAGTGATCAGGAAGTTTGGTCTGGAGACCAGAGGGCTGACTGGATACCTCCTCACCCAGGAGGAGATGATCAAGAAACACTTCCCTGTCCGCGGTATGCCTGGCAGTGAGGGCTTTGTGTGTACAGACAGTGACGACTGTGTGACTGACAGTAGTCCTCTCTATGGGCTGGACTGTGAGATGtgtctgACAGAATGTGGCAACGAGCTGACACGCATCTCTCTAgtagacagcagagggagctgtGTTCTGGACGAGCTGGTCAAACCTCCCAACCGCATCCTACACTACCTTACACAGTTCTCTGGTATCACCCGTGCAATGCTGCAGCCAATCACCACCACCCTGAGAGAAGTCCAATCAAAGCTCAAGAAAGTGTTGCCCCGGGACGCGGTCCTGGTTGGCCACTCCCTTGAGAACGACCTCGTGGCCCTGAACCTGATCCACCCCCATGTGATTGACACCTCCCTGCTGTACAGGAGAGAGTTTGGACGGAGGTTTAAACTCAAGGTGCTGGCTGAGACTGTGCTCAAGAAGCAGATCCagacggaggagaggaaaggtCATGACCCCACAGAGGACGCCCAGGCTGCCCTGGAACTGGCCCAGTACTTCATACACACTGGACCACGacagGTAGTAGAGCTGTATTGTGAAGAGCTGTGGGGTGGGAGTCCTACCATGTACCAGCCTCCTGTCAACAGAGCAacatctacacacaacaacaacaacagGTTCGCCGAGGCCCTGAAGAGTTCTGGCCAATCAGCCGTGTTTATAGGGAAGCGTGCTGACAACACCCTGGATCTGGCCAATCAGCAGTGGCACAGCTCAGACAGAGAGGTCTTGTCTTCCTTTAAAAGAGGACTAGACTCTCACTCGTTCAGCGTTGTCCAGTTGTCTTCCTTCTCTGACCATCTGAAGGCTATGATCTCTACTGACCAGCACTACCACACGATGTCTCAGCGtctgagagagatgtgtgtggtGTTTGCAGGGCCGTTGCCTAGCGACTACACAGAGAGGGCTGTGAGGAGGCTGTTCAGCAGCTGTGGAACCGTACGAGCTGTCAGGCTGTTGAACACTACTCAGAGGGTGCATGCAGAGGTAGAGTTTGAGCTGCTGGAGGGAGCTGTGCTGGCTGTCGAGATGCTCAACGGAACACTGCTACACAGCGGACACATCGTCAAGGTCCAGAGACCTGTAAAGGAGTCCATGTTGGATCTGGACGTCTTTCTGAGTTCCCTGCAGGATGACCCGCTAAATGCTAACGTCATCTACGCCGCAGGGCTAAAGGCTAATGCTAAAACAGCACAGTTTGCAGCCAAAGTCAATGGGACTGGGCTAAATGCTAATGCAGCAGCTGAAGTCAATGAGACTGGGCTAAATGCTAACATAGCAGCACTCCCAGCTAAGGTCAATAGAGCTAGGCTACATGCTAAAGCGAACCATTCGGGGCTCTTAGAGAAAGTCAATGGAACTTTTCTAAATGCTAAAGCTAAGCTAGCTGAAGCGAATGGACCTGGGCTACATGCTAAAGCTAAATTTGCTAAGCTAGCAGAGCTCTCAGTTGAAGTCAATGGCACTCTGCTCCAAGTGAAAACTATGCTAGCAGAGATAGCAGCCGAAGCCAATGTTGGAGCGAGGCTCCATGCTAAGACTGCCGGACTCTGTGAAGAGGACCTCCGCGAGGCCTTCGGACAGTACGGAACGGTTCAGGGCGTAATTCTACCTGCAAAGCACTCTGGAAAACAGAAACGTAGGAGACATGCTTTCTTAAAGTATGATAGTCCTGACACTGTGGACGCGGTCCTCAGCTCACCTGTGGAACTCTGGGACAGGAAGGTGAGCACTCGCAGAGCCCTAACTCCGCCCCACCTGTGCTCCTGGGTTACTATGACGACGACGACTGGGTCCGACAGAGAAACACTGGACGAGTCGTCGCAGGAAAccggaagagaggaacaggaagtggCGTGCGTGATGAGGAAGTTGGACCGGCGCGTGGGGAAGCTGTTCAGATCTCTACCTGACAACACCCTCAGCATCGTACTGCTGCCTGGTCACAACAGTTCCCATGGCGATGGTCTGTGTTTCCTGGAGGTCAAACAGGGGTCAGCAGCACTCAGTGACCACGCCCCCGACCTGATGCTACCTGCATAGGGTACCTTCCCAAGATTCCCAGGAATCCAGTTCCTTCCCAAGATTCCCAGAAATTCCGGTTGGAAGATTCTGGATTTCTTGCTTACTCCCTCCTGATTTCGTGAATCTTCCAAACGGGACATTTTGAGAAAGTTAACAGATGTTGGCAACACTTCGCCTGCGATACTGTGTTTTACCATCTTGGTGTGCTGTAGCCCAGCAGTGCTACAACTTGACTAACAAAGACAGCTCTAGGCTACGAGAGTATTAAGTCATGTTTTAAATAAAGAGGTGAGTCTACCTACGAGTGCTTGATATGTTTCGTTCAGTACAGGCTGGACAGGGTTTTGGACACAGGCAATGTGTCTgatatgacaccctattccctatgtagtgtgcaCTAtggccaccctattccctatgtagtgtgcagcctattccctatgtagtgtgcaCTATGGGCAggctattccctatgtagtgtgcaCTATGGGCACACCATGGGTCCTGGCAAAACTCTCTACAGGGAttattagggtgccattttggacgtaaACTCACTGTTTGACCTGTATTGCTGCTTCTGATCCGAATCACATGATGCCTTGTGTCGTCTTTATCATGTCCatctaataaacaggtgattgttGTTAA
>TU1296165
ACGACGACTGGGTCCGACAGAGAAACACTGGACGAGTCGTCGCAGGAAAccggaagagaggaacaggaagtggCGTGCGTGATGAGGAAGTTGGACCGGCGCGTGGGGAAGCTGTTCAGATCTCTACCTGACAACACCCTCAGCATCGTACTGCTGCCTGGTCACAACAGTTCCCATGGCGATGGTCTGTGTTTCCTGGAGGTCAAACAGGGGTCAGCAGCACTCAGTGACCACGCCCCCGACCTGATGCTACCTGCATAGGGTACCTTCCCAAGATTCCCAGGAATCCAGTTCCTTCCCAAGATTCCCAGAAATTCCGGTTGGAAGATTCTGGATTTCTTGCTTACTCCCTCCTGATTTCGTGAATCTTCCAAACGGGACATTTTGAGAAAGTTAACAGATGTTGGCAACACTTCGCCTGCGATACTGTGTTTTACCATCTTGGTGTGCTGTAGCCCAGCAGTGCTACAACTTGACTAACAAAGACAGCTCTAGGCTACGAGAGTATTAAGTCATGTTTTAAATAAAGAGGTGAGTCTACCTACGAGTGCTTGATATGTTTCGTTCAGTACAGGCTGGACAGGGTTTTGGACACAGGCAATGTGTCTgatatgacaccctattccctatgtagtgtgcaCTAtggccaccctattccctatgtagtgtgcagcctattccctatgtagtgtgcaCTATGGGCAggctattccctatgtagtgtgcaCTATGGGCACACCATGGGTCCTGGCAAAACTCTCTACAGGGAttattagggtgccattttggacgtaaACTCACTGTTTGACCTGTATTGCTGCTTCTGAT

Function

NR:

description
PREDICTED: putative RNA exonuclease NEF-sp

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942177.1 False 3539 mRNA 0.52 18 3533508 3554061
XM_036942178.1 False 3530 mRNA 0.52 18 3533508 3554061
TU1296165 True 828 lncRNA 0.50 2 3533574 3536492

Neighbor

gene id symbol gene type direction distance location
LOC110487308 LOC106595461 coding downstream 1367 3521685 ~ 3532141 (-)
LOC110487303 LOC106593981 coding downstream 20348 3508282 ~ 3513160 (-)
LOC110487174 LOC106594426 coding downstream 113387 3414022 ~ 3420121 (-)
LOC110487344 LOC106594449 coding downstream 126925 3387801 ~ 3406583 (-)
LOC118938420 NA coding downstream 148467 3382292 ~ 3385041 (-)
LOC110524887 LOC106564116 coding upstream 18901 3572962 ~ 3584380 (-)
LOC118938144 NA coding upstream 144683 3698309 ~ 3705039 (-)
LOC118938145 NA coding upstream 147485 3701546 ~ 3702061 (-)
LOC118938513 LOC106595758 coding upstream 294631 3848692 ~ 3891054 (-)
LOC110493403 LOC106580921 coding upstream 352830 3906891 ~ 3920631 (-)
G1137506 NA non-coding downstream 27155 3505633 ~ 3506353 (-)
G1137472 LOC106594097 non-coding downstream 49246 3477705 ~ 3484262 (-)
G1137470 LOC106564092 non-coding downstream 53124 3479067 ~ 3480384 (-)
G1137487 NA non-coding downstream 61699 3471479 ~ 3471809 (-)
G1137483 NA non-coding downstream 65601 3467476 ~ 3467907 (-)
G1137528 NA non-coding upstream 2889 3556950 ~ 3557949 (-)
G1137542 NA non-coding upstream 43300 3597361 ~ 3598381 (-)
G1137543 NA non-coding upstream 44716 3598777 ~ 3600123 (-)
G1137557 NA non-coding upstream 63237 3617298 ~ 3618910 (-)
G1137577 NA non-coding upstream 104297 3658358 ~ 3661831 (-)
LOC110514041 LOC106585204 other downstream 345324 3161191 ~ 3197982 (-)
G1137174 NA other downstream 402955 3129613 ~ 3130553 (-)
G1136948 NA other downstream 673467 2859031 ~ 2860041 (-)
G1136568 NA other downstream 1011147 2521827 ~ 2522361 (-)
G1137666 NA other upstream 177560 3731621 ~ 3733300 (-)
G1137672 LOC106595836 other upstream 211221 3765282 ~ 3765816 (-)
G1138151 LOC106606801 other upstream 840684 4394745 ~ 4421260 (-)
G1138232 NA other upstream 1065434 4619495 ~ 4620179 (-)
G1138568 NA other upstream 1604104 5158165 ~ 5162954 (-)
G1137527 NA non-coding upstream 14061 3550553 ~ 3551804 (-)

Expression


Co-expression Network