XLOC_030171 (abcg4a)


Basic Information

Item Value
gene id XLOC_030171
gene name abcg4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 30624183 ~ 30672482 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058992
GCGCTGCAGCATCCGGAGGACCGGCAGGATGAGCACTAGACTACTCCTCTCCCTCTCCACACACACCGCTCCATACGCATTCCGGATGAGTGTAAATGCGCAATGATCGACTCACGGCTTGCCCTTCCGTCAGCTGTCCGAGATGAAACTCCCGGTTTAACGGGGATGCTGCATCTGCTCAATTATTGATAACTGTTATGTTTGTTTTGGATGTGAATTGTCTCGGGGTGTTTTCAGTGAACGAAATGACTGTGACGCGTAGCGGCTTTCTGAAGGAGAAGAGCATCCTCGCCGTCACCGGTGAGCGGGATCGGGCGTGTAACGGAGCATCTTTTCTCTCATTCGGAGTATAGTGCGGGGCCGCTCCTGTTGCTGAAGCCTATGTGTGTGGGGGTCTGCGTATGATGCTCAAAGGAATGATTTGGACATCTTTATAAAAGCAAAACACGCTGCCAAATAGACATTTGTTCAACTCAGCGCGTCAAAAAAGCTCTTGGTATGGCTGAGAAGACCTTAGAGCCGGGGTCTGTCTCCATTCCTATGGAGGAGACGAAGCGTGCTGGTGGAGATGCTGCCATGTTGACCCACCTGAAGAAGGTGGAGAACCACATCACTGAGGCTCAGAGGTTTTCACATCTGCCCCGCCGTTCAACAGTGGATCTGGAGTTTACAGAGCTCTCCTACACCATCCGTGAAGGCCCCTGTTGGAGGAGGCGAGGATTTAAGGCCCTTCTGAAGTGTCTGTCCGGAAAATTCTGCAGTCGGGAGCTGATCGGAATCATGGGGCCCTCAGGAGCCGGCAAATCCACCCTCATGAACATCCTTGCTGGATACAGAGAGACGGGTATGAAAGGTCAGATCCTGGTAAATGGGCGACCCCGTGACCTCCGCACCTTCAGAAAAATGTCATGTTACATCATGCAAGATGACATGCTACTGCCACACCTGACAACACGAGAGGCAATGATGgtgTCAGCCAACCTTAAACTTAACGAAAATATGGAGGTGAAAAAAGAACTGGTTAATGAGATTCTAACAGCATTAGGACTACAGGAGTGTGCCCAAACTCGCACCATCTCTCTGTCCGGTGGCCAGTGTAAACGCTTGGCGATTGCCTTGGAGCTGGTCAACAACCCTCCAGTCATGTTTTTTGATGAACCCACCAGTGGTCTAGACAGCGCATCCTGTTTCCAGGTGGTGTCCTTGATGAAATCTCTGGCTCAAGGAGGAAGAACCATCATCTGTACCATCCACCAGCCCAGCGCAAAACTGTTCGAAATGTTCGACAAGCTTTATATCCTGAGTCAGGGTCAGTGTATATATAAGGGGACGGTGCCGTATCTTATCCCTTACCTGAAAAACCTTGGACTCCACTGCCCCACCTACCACAATCCTGCTGACTTTATAATCGAGGTCGCCTCGGGAGAGTACGGTGACCTGAACCCTGTGCTCTTCGAAGCTGTTCAAGGAGGCCTGTGTTCAGATGACAGTAAGAAGAACTCCAGTGACAAGAATGACCCCACCACTTCCTGTCCATCCCAGTGTTATCCTgATTCTGGATACATTGAGAAACACACTTTTGCCACCAGTACCCTCACACAGTTCTGCATCCTCTTCAAGAGAACCTTCATTACTATATGCAGGGACGTGgtATTAACCCACCTGAGAGTGATGTCGCACCTGTGTATCGGCGTGTTGATTGGCCTGCTGTATCTGAACATTGGGAATGATGCCAGCAAAGTGTTCAACAACACTGGCTTCCTGTTCTTCTCTATGCTGTTTCTCATGTTTGCTGCTCTCATGCCCACCGTCCTAACATTTCCACTGGAGATGGGTGTGTTCATAAGAGAGCATCTTAATTACTGGTACAGTTTAAAGGCGTATTACTTGGCTAAGACCATGGCTGACATTCCATTCCAGGTCATTTGTCCGATTATGTACTGCAGTATAGTGTACTGGATGACAGAGCAACCCCCAGAGGCAGGCAGATATCTGCTGTTTATGGCTCTGTCCACCTCCACTGCCCTGGTGGCTCAGTCTCTGGGGCTTCTCATCGGAGCTGCATCCACTTCACTTCAGGTTGCCACATTTGTAGGACCGGTCTCCGCCATCCCAGTCCTTCTGTTCTCTGGCTTCTTTGTCAACTTTGACACCATCCCGAAATATCTTCAATGGAGCTCTTATGTGTCATATGTCAGATATGGCTTTGAGGGTGTGATCCTCTCCATCTACGGCATGAACCGCTCAGAGTTGGAGTGTCCCGGCATAGTGTGCAAGTTCCAGAAACCAGAGGAGGTCCTGCAGCTGTTGGATGTGGAGGACGCAAAGCTCTATGTGGACTTTATGGTGCTGGGGGTCTTCTTTTTAGTTCTCAGACTTGCCACTTACTTTGTCCTGCGTTACAAAGTCAAGTCAGAGCGTTAG
>TCONS_00058993
ATGGCTGAGAAGACCTTAGAGCCGGGGTCTGTCTCCATTCCTATGGAGGAGACGAAGCGTGCTGGTGGAGATGCTGCCATGTTGACCCACCTGAAGAAGGTGGAGAACCACATCACTGAGGCTCAGAGGTTTTCACATCTGCCCCGCCGTTCAACAGTGGATCTGGAGTTTACAGAGCTCTCCTACACCATCCGTGAAGGCCCCTGTTGGAGGAGGCGAGGATTTAAGGCCCTTCTGAAGTGTCTGTCCGGAAAATTCTGCAGTCGGGAGCTGATCGGAATCATGGGGCCCTCAGGAGCCGGCAAATCCACCCTCATGAACATCCTTGCTGGATACAGAGAGACGGGTATGAAAGGTCAGATCCTGGTAAATGGGCGACCCCGTGACCTCCGCACCTTCAGAAAAATGTCATGTTACATCATGCAAGATGACATGCTACTGCCACACCTGACAACACGAGAGGCAATGATGgtgTCAGCCAACCTTAAACTTAACGAAAATATGGAGGTGAAAAAAGAACTGGTTAATGAGATTCTAACAGCATTAGGACTACAGGAGTGTGCCCAAACTCGCACCATCTCTCTGTCCGGTGGCCAGTGTAAACGCTTGGCGATTGCCTTGGAGCTGGTCAACAACCCTCCAGTCATGTTTTTTGATGAACCCACCAGTGGTCTAGACAGCGCATCCTGTTTCCAGGTGGTGTCCTTGATGAAATCTCTGGCTCAAGGAGGAAGAACCATCATCTGTACCATCCACCAGCCCAGCGCAAAACTGTTCGAAATGTTCGACAAGCTTTATATCCTGAGTCAGGGTCAGTGTATATATAAGGGGACGGTGCCGTATCTTATCCCTTACCTGAAAAACCTTGGACTCCACTGCCCCACCTACCACAATCCTGCTGACTTTATAATCGAGGTCGCCTCGGGAGAGTACGGTGACCTGAACCCTGTGCTCTTCGAAGCTGTTCAAGGAGGCCTGTGTTCAGATGACAGTAAGAAGAACTCCAGTGACAAGAATGACCCCACCACTTCCTGTCCATCCCAGTGTTATCCTgATTCTGGATACATTGAGAAACACACTTTTGCCACCAGTACCCTCACACAGTTCTGCATCCTCTTCAAGAGAACCTTCATTACTATATGCAGGGACGTGgtATTAACCCACCTGAGAGTGATGTCGCACCTGTGTATCGGCGTGTTGATTGGCCTGCTGTATCTGAACATTGGGAATGATGCCAGCAAAGTGTTCAACAACACTGGCTTCCTGTTCTTCTCTATGCTGTTTCTCATGTTTGCTGCTCTCATGCCCACCGTCCTAACATTTCCACTGGAGATGGGTGTGTTCATAAGAGAGCATCTTAATTACTGGTACAGTTTAAAGGCGTATTACTTGGCTAAGACCATGGCTGACATTCCATTCCAGGTCATTTGTCCGATTATGTACTGCAGTATAGTGTACTGGATGACAGAGCAACCCCCAGAGGCAGGCAGATATCTGCTGTTTATGGCTCTGTCCACCTCCACTGCCCTGGTGGCTCAGTCTCTGGGGCTTCTCATCGGAGCTGCATCCACTTCACTTCAGGTTGCCACATTTGTAGGACCGGTCTCCGCCATCCCAGTCCTTCTGTTCTCTGGCTTCTTTGTCAACTTTGACACCATCCCGAAATATCTTCAATGGAGCTCTTATGTGTCATATGTCAGATATGGCTTTGAGGGTGTGATCCTCTCCATCTACGGCATGAACCGCTCAGAGTTGGAGTGTCCCGGCATAGTGTGCAAGTTCCAGAAACCAGAGGAGGTCCTGCAGCTGTTGGATGTGGAGGACGCAAAGCTCTATGTGGACTTTATGGTGCTGGGGGTCTTCTTTTTAGTTCTCAGACTTGCCACTTACTTTGTCCTGCGTTACAAAGTCAAGTCAGAGCGTTAG
>TCONS_00058994
GAATGATGTAAACACAACAGCTTTGTTAGCCTTTTTATGTCTTTTTAAGACATCTTTGAATATGCGTGTGAGGTGTTTCTAGTTATGTGTGCTGTATGCATCAGACATTCAGCCAATGGTCTgtATTAACCCACCTGAGAGTGATGTCGCACCTGTGTATCGGCGTGTTGATTGGCCTGCTGTATCTGAACATTGGGAATGATGCCAGCAAAGTGTTCAACAACACTGGCTTCCTGTTCTTCTCTATGCTGTTTCTCATGTTTGCTGCTCTCATGCCCACCGTCCTAACATTTCCACTGGAGATGGGTGTGTTCATAAGAGAGCATCTTAATTACTGGTACAGTTTAAAGGCGTATTACTTGGCTAAGACCATGGCTGACATTCCATTCCAGGTCATTTGTCCGATTATGTACTGCAGTATAGTGTACTGGATGACAGAGCAACCCCCAGAGGCAGGCAGATATCTGCTGTTTATGGCTCTGTCCACCTCCACTGCCCTG

Function

symbol description
abcg4a Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be involved in cholesterol efflux. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ABCG4 (ATP binding cassette subfamily G member 4).

GO:

id name namespace
GO:0033344 cholesterol efflux biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050517-39 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be involved in cholesterol efflux. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ABCG4 (ATP binding cassette subfamily G member 4).

Ensembl:

ensembl_id ENSDARG00000061047

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058992 False 2424 mRNA 0.50 15 30624183 30672482
TCONS_00058993 False 1926 mRNA 0.50 14 30635309 30672482
TCONS_00058994 True 500 processed_transcript 0.45 4 30669121 30670269

Neighbor

gene id symbol gene type direction distance location
XLOC_030170 hinfp coding upstream 11454 30596477 ~ 30612729 (+)
XLOC_030169 dpagt1 coding upstream 28811 30588856 ~ 30595372 (+)
XLOC_030168 hmbsa coding upstream 89757 30518036 ~ 30534426 (+)
XLOC_030167 stk36 coding upstream 213018 30392148 ~ 30411165 (+)
XLOC_030166 zgc:158412 coding upstream 232363 30384554 ~ 30391820 (+)
XLOC_030172 pdzd3b coding downstream 8322 30680804 ~ 30697908 (+)
XLOC_030173 atp5l coding downstream 26778 30699260 ~ 30701891 (+)
XLOC_030174 BX276103.2 coding downstream 50647 30723129 ~ 30727648 (+)
XLOC_030175 ftr83 coding downstream 69248 30741730 ~ 30753167 (+)
XLOC_030176 ruvbl2 coding downstream 86750 30759232 ~ 30770807 (+)
XLOC_030164 BX897688.1 non-coding upstream 457611 30166456 ~ 30166572 (+)
XLOC_030162 dre-mir-125b-2 non-coding upstream 625336 29998762 ~ 29998847 (+)
XLOC_030161 dre-let-7a-4 non-coding upstream 633639 29990452 ~ 29990544 (+)
XLOC_030160 mir100-2 non-coding upstream 633962 29990147 ~ 29990221 (+)
XLOC_030159 NA non-coding upstream 635752 29902153 ~ 29988431 (+)
XLOC_030177 NA non-coding downstream 107948 30780430 ~ 30974079 (+)
XLOC_030178 NA non-coding downstream 279741 30952223 ~ 30954521 (+)
XLOC_030185 CR759893.1 non-coding downstream 875830 31548312 ~ 31548787 (+)
XLOC_030191 NA non-coding downstream 1232365 31904847 ~ 31912078 (+)

Expression


Co-expression Network