LOC118938144


Basic Information

Item Value
gene id LOC118938144
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3698309 ~ 3705039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035407.1
GTGTTGGGTCAGTATTTAAGGTGTTGGGTCAGTATTTAAGGTGTTGGGTCCTTACTCGTGATGGGTGCAGAGTGATGAGCTACCAGGAAGTAGAGTTAGGTCAGTATTTAAGGTGTTGGGTCAGTATTTAAGGTGTTGGGTACTTACTCGTGATGGGTGCAGAGTGATGAGCTACCAGGAAGTAGAGTTAGGTCAGTATTTAAGGTGTTGGGTCAGTATTTAAGGTGTTGGGTCAGTATTTAGGGTG
>TU1296404
TTTAAGGTGATGGGTCAGTATTTAAGGTGTTGGGTCGGTATTTAAGGTGTTGGGTCAGTATTTAAGGTGTTGGGTCAGTATTTAAGGTGTTGGGTCAGTATTTAAGGTGTTGGGTCAGTATTTAAGGTGTTGGGTCAGTATTTAGGGTGTTGGATCCTTACTCGTGATAGGTGCAGAGTGATGAGCTACCAGGAAGTTGAGTTTGGACTGCTTCAGGAGAGACATCTTGCCCACTTTCTTTTTTTCTGCATTTTTCTTCTTCGCTCCCTTCTTCTTCACTTTCTTCTCGACTTCCCAGTCTTCGTCatcctcgtccctctctctctcctcctctccctcagtgttTCCCAGAGGTTCCAGAGGCGATGTTGTTTTACGGGTAGGCCGAGTCTTTGTGGTAGCTGGTGTTTTTAGGGTGGCCTGCGCTGGGGTTTGGGGggccccctctccttcccctcctccccctacaGTGCGAAGCCGGTCTGATCGCTCCTGCTCTTTCACGAGATGTCGAAGCAGATCAGACTCGTCAACGTGCAGATGGCCGAGGTACTTAGTGGTCCTCTGACGACCCTCGTCTTCCA
>TU1296406
CCTCTATGATCTTGAGGCTCTGAACAGCTTCCACAATCACGTTCTTCCTCTTCAGCAGGCGGTAAGTCTGGCGGTGGTGCTCCTGACCCAACAGAGACCGGGGGGGACAGGGATTCAGACAGGGAATTCATGCACTAGATTTAAAGACATCTCTACATCATAATGTTTGAGAGACACACAGCCTCACCTTCTGACTGGGGATCTCCTCGATGACCGTGACGCTGTCCTCTGCTTGGCTGTTGCCTGCGAACATACTCCCCGTCTTGTCCAATGAAACGTCAGGACCGAATTTTGACTCCTCCTCCGCAACTGGGCTGAGCCAAGATTCCAGCTCTGGCTCCTGATTGGCTCCACTCGTGATGGGTGCAGAGTGATGAGCTACCAGGAAGTTGAGTTTGGACTGCTTCAGGAGAGACATCTTGCCCACTTTCTTTTTTTCTGCATTTTTCTTCTTCGCTCCCTTCTTCTTCACTTTCTTCTCGACTTCCCAGTCTTCGTCatcctcgtccctctctctctcctcctctccctcagtgttTCCCAGAGGTTCCAGAGGCGATGTTGTTTTACGGGTAGGCCGAGTCTTTGTGGTAGCTGGTGTTTTTAGGGTGGCCTGCGCTGGGGTTTGGGGggccccctctccttcccctcctccccctacaGTGCGAAGCCGGTCTGATCGCTCCTGCTCTTTCACGAGATGTCGAAGCAGATCAGACTCGTCAACGTGCAGATGGCCGAGGTACTTAGTGGTCCTCTGACGACCCTCGTCTTCCA

Function

NR:

description
general transcription factor 3C polypeptide 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035407.1 False 247 mRNA 0.45 4 3698744 3700326
TU1296404 False 584 lncRNA 0.50 2 3698309 3700372
TU1296406 True 777 lncRNA 0.54 3 3698309 3705039

Neighbor

gene id symbol gene type direction distance location
LOC110524887 LOC106564116 coding downstream 114364 3572962 ~ 3584380 (-)
LOC110517154 LOC106594599 coding downstream 144683 3533508 ~ 3554061 (-)
LOC110487308 LOC106595461 coding downstream 166603 3521685 ~ 3532141 (-)
LOC110487303 LOC106593981 coding downstream 185584 3508282 ~ 3513160 (-)
LOC110487174 LOC106594426 coding downstream 278623 3414022 ~ 3420121 (-)
LOC118938145 NA coding upstream 1220 3701546 ~ 3702061 (-)
LOC118938513 LOC106595758 coding upstream 148366 3848692 ~ 3891054 (-)
LOC110493403 LOC106580921 coding upstream 206565 3906891 ~ 3920631 (-)
LOC110512903 LOC106564302 coding upstream 292045 3992371 ~ 4018609 (-)
LOC110514885 LOC106593640 coding upstream 318892 4019218 ~ 4020526 (-)
G1137648 NA non-coding downstream 17117 3680745 ~ 3681627 (-)
G1137584 NA non-coding downstream 22293 3675687 ~ 3676451 (-)
G1137583 NA non-coding downstream 23320 3670904 ~ 3675424 (-)
G1137577 NA non-coding downstream 36913 3658358 ~ 3661831 (-)
G1137557 NA non-coding downstream 79834 3617298 ~ 3618910 (-)
G1137655 NA non-coding upstream 8667 3708993 ~ 3711132 (-)
G1137656 NA non-coding upstream 11869 3712195 ~ 3712934 (-)
G1137659 NA non-coding upstream 18326 3718652 ~ 3826196 (-)
G1137663 NA non-coding upstream 27971 3728297 ~ 3728704 (-)
G1137664 NA non-coding upstream 28752 3729078 ~ 3729765 (-)
LOC110514041 LOC106585204 other downstream 510560 3161191 ~ 3197982 (-)
G1137174 NA other downstream 568191 3129613 ~ 3130553 (-)
G1136948 NA other downstream 838703 2859031 ~ 2860041 (-)
G1136568 NA other downstream 1176383 2521827 ~ 2522361 (-)
G1137666 NA other upstream 31295 3731621 ~ 3733300 (-)
G1137672 LOC106595836 other upstream 64956 3765282 ~ 3765816 (-)
G1138151 LOC106606801 other upstream 694419 4394745 ~ 4421260 (-)
G1138232 NA other upstream 919169 4619495 ~ 4620179 (-)
G1138568 NA other upstream 1457839 5158165 ~ 5162954 (-)
LOC110487221 dcaf15 coding upstream 351994 4057033 ~ 4098713 (-)

Expression


Co-expression Network