LOC118938513 (LOC106595758)


Basic Information

Item Value
gene id LOC118938513
gene name LOC106595758
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3848692 ~ 3891054 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118938513
ATGTCGCGAGGGaGCCCAGTAGAGTGTAAGCTGCCCGGTCCCTCCCCACAGAACCCCTCCTGGACCCCCAGCCATGAACAAGCAGCCAGTAAAGAGAGTCTGAAGGACAAGGTAAAGGGATATTTGGTTTGGGATCCCCTCGACCCCCCAGCAAGCAGACAGAGAGCAAGCCCTCAGAGTTCATCATCACACTGGATATACTCAAGGAGCTGCACCCTGACTGTGGCCTTAGCAACAGAATCCGGGTTGCTAACCATGTCTCCGACCTGGCCAAGGCCAAGAAGTTTGAGGAGcaTGCAGTGGAAGCCGTATGGAAGGCGGTGGAGGACATGCTGACTCCAGAACAGCCACCTGAAGCTAGACATGCTGTCCTGCTGCTCCTCAGAGCTGTCATACagggacaggGTGAGCGTCTGGGTCCTATGCGGGCCTTCTTCTTCAAGGTGATCAGAGACTACCAGCCGTCCAATGAGGACCTGTCTGACAGGCTGGAGGTGTTCAAGGCCCTGACGGAGAACGGGAAGGACATCACGTACCTGGAGGAGGACATAGCTGGGTTTGTCCTGCTGTGGATGGACATTGGTCTGACCGCGGACTTCCTCCACGTCCTGGTCAACCTGGTCAAGTTCAACAGCTGCTACCTCGACCAGAACGTATCCGTCATGGtccaGAAGATCTGTCTGCTGTGTAACCGGACAACAGCCTCGACAGACATTGAGatggCTCTACAGGTGCTGGATGCGGTGGTGTGTTATAACTGCCTCCCCTCTGACTCCTCACCGTCTTCATCATCACTCTCTGTCGCACCGTCAACGTCAAGGAGTTCTGTgagtcctgctggaagttGATGAGGAAGGTGTTGGGGACTCATCTGGGCCATAGTGCCATATACACCATGTGCCGTATCATGGAGGAGAGggcgtATATGGAGGATTCTCCATTGCTGAGAGGAGCAGTGTTCTCGTAGGATGGCTCTATGGGGGGCGCACCGTCTCCCAGCCTTAAAGAACACCCCTACCCTGGTCCTCCCATCATTCTATAAGGCGATGTGGTGTGCCAACGAGATGGTGTCGTATGAGATCGTTCTGTCCATCACAGACTGATAAAGAAGTATGGCAAGGAACTCCAGGTGGTCACATGGGACATACTGCTGGGGATCATAGAGAGGTTACTACAGCAgattcaGTTTCTCTGTGTTTTCTGTGTTTCTCTGTGTTTTCTGTGTTTCTCTATGTTCTTCTGTGTTTCTCTGTGTTCTTCTGTGTAG
>TU1296496
GTAATCTGACTATTCCTTACCATTGATTTATTTAAGCAATTGTAGGTTTCTCTGTGTAGCTTTCTCTGTGTAGGTTTCTCTGTGTAGGTTTCTCTGTGTAGGTTTCTCTGTGTAGGTTTCTCTGTGTAGGTTTTTCTGTATAGGTTTCTCTGTGTAGGTTTCTCTGTGTAGGTTTTTCTGTGTAGGTTTTCTGTGTAGGTTTCTCTGTGTAGGTTTCTCTGTGTAGGTTTTACTGTGTAGGTTTTCTGTGTAGGTTTCTCTGTGTAGGTTTCTCTGTGTAGGTTTCTCTATGTAGGTTTTTCTGTGTAGGTTTTCTGTGTAGGTTTCTCTGTGTAGGTTTTTCTGTATAGGTTTTTCTGTGTAGGTTTCTCTTTGTAGGTTTTT

Function

NR:

description
PREDICTED: CD276 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118938513 False 1267 mRNA 0.38 19 3848692 3891054
TU1296496 True 384 lncRNA 0.38 2 3848909 3849499

Neighbor

gene id symbol gene type direction distance location
LOC118938145 NA coding downstream 146631 3701546 ~ 3702061 (-)
LOC118938144 NA coding downstream 148366 3698309 ~ 3705039 (-)
LOC110524887 LOC106564116 coding downstream 264312 3572962 ~ 3584380 (-)
LOC110517154 LOC106594599 coding downstream 294631 3533508 ~ 3554061 (-)
LOC110487308 LOC106595461 coding downstream 316551 3521685 ~ 3532141 (-)
LOC110493403 LOC106580921 coding upstream 15837 3906891 ~ 3920631 (-)
LOC110512903 LOC106564302 coding upstream 101317 3992371 ~ 4018609 (-)
LOC110514885 LOC106593640 coding upstream 128164 4019218 ~ 4020526 (-)
LOC110487221 dcaf15 coding upstream 165979 4057033 ~ 4098713 (-)
LOC110485446 LOC106592110 coding upstream 207867 4098921 ~ 4114272 (-)
G1137659 NA non-coding downstream 22496 3718652 ~ 3826196 (-)
G1137687 NA non-coding downstream 58045 3789476 ~ 3790647 (-)
G1137669 NA non-coding downstream 101649 3744834 ~ 3747043 (-)
G1137671 NA non-coding downstream 102893 3744585 ~ 3745799 (-)
G1137670 NA non-coding downstream 104292 3744004 ~ 3744400 (-)
G1137992 NA non-coding upstream 65630 3956684 ~ 3957020 (-)
G1137994 NA non-coding upstream 73275 3964329 ~ 3965415 (-)
G1138031 NA non-coding upstream 84502 3975556 ~ 3976008 (-)
G1138032 NA non-coding upstream 86803 3977857 ~ 3978640 (-)
G1138021 NA non-coding upstream 122722 4013776 ~ 4020694 (-)
G1137672 LOC106595836 other downstream 82876 3765282 ~ 3765816 (-)
G1137666 NA other downstream 115392 3731621 ~ 3733300 (-)
LOC110514041 LOC106585204 other downstream 660508 3161191 ~ 3197982 (-)
G1137174 NA other downstream 718139 3129613 ~ 3130553 (-)
G1138151 LOC106606801 other upstream 503691 4394745 ~ 4421260 (-)
G1138232 NA other upstream 728441 4619495 ~ 4620179 (-)
G1138568 NA other upstream 1267111 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 1310001 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 1326637 5216411 ~ 5244441 (-)

Expression


Co-expression Network