LOC110514885 (LOC106593640)


Basic Information

Item Value
gene id LOC110514885
gene name LOC106593640
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4019218 ~ 4020526 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594035.2
GCCAAGAGAACCACACAGCACCACCGGGTGAGAGCGAAGGAGACaccgacagagacacacagagactcacCCAACCTTCACCAGACCACTGATCCACACCTGCAGCCGGGCTGTCACTTTCAAGGCTCTTTCTCTTggactcctctttcctctctctctccatctgtcgcTCCTGATCATGTGGAAGGCTGCAGTGTTGACGTTTGGCCTGTTGGTGGCGCTGGTGGGTATGGTGCAGGCTGCAGAGGGCCACGCTAACTCTATCTACGGTGTGAAGCTGTGCGGGAGAGAGTTTATACGGGCCGTCATCTTCACCTGCGGAGGATCGcgttggaggagaggagtgggcgACGCCGGTGACATCTCCATTGACGAGGAGACTGAGGCCTACAGCCCATGGAGCTCCAACGCCATCCCCGGCCTCGCCAGCAAGCAGCGTCCAGGATTGGAGGCTCAGGGCTGGGCAGGCGAGGTCAGGGAGGGGGGCTCTGCCGCTGCTGTGTTCAGTCGTTTGGCCCGCTCGCCCATCTCAGAGGAAGTGCTAGAGGCGCTGCGCAGTGCGGACAGGAAGGGGCGGGATGTCGTGGTGGGCCTCTCCAACGCCTGCTGCAAGTGGGGCTGCAGCAAGAGCGagatcagctccctctgttgagCACTACCAACACCTCTCCTTTTCATCCCTCTGTTGAGCACTACCAACACCTCTCATTTTCATCCCTCTGTTGAGCACTACCAACACCTCTCCTTTTCATCCCTCTGTTGAGCACTACCAACACCTCTCATTTTCATCCCTCTGTTGAGCACTACCAACACCTCTCCTTTTCATCCCTCTGTTGAGCACTACCAACACCTCTCCTTTTCATCCCTCTGTTgagcatccctccctccttccctctagcCCTCCATCCCTCTAGCCCTCCTTCCCTCTAgccccccccatccctccttccctccatccctccatccctccacttttctatccttccattcctcctgcttcttctccttctcctggaTCATTGTGTTGATCATTTAGGGTCATGTATTCTCCAACCTATGTCAGTATTATGAGCAGTTTTTGTGTGTTTAGTTACTGATATGACAGTCCAATAAAGTTGTGTTTTGAAAGTG
>XM_021594034.2
CCGCCAAGAGAACCACACAGCACCACCGGGTGAGAGCGAAGGAGACaccgacagagacacacagagactcacCCAACCTTCACCAGACCACTGATCCACACCTGCAGCCGGGCTGTCACTTTCAAGGCTCTTTCTCTTggactcctctttcctctctctctccatctgtcgcTCCTGATCATGTGGAAGGCTGCAGTGTTGACGTTTGGCCTGTTGGTGGCGCTGGTGGGTATGGTGCAGGCTGCAGAGGGCCACGCTAACTCTATCTACGGTGTGAAGCTGTGCGGGAGAGAGTTTATACGGGCCGTCATCTTCACCTGCGGAGGATCGcgttggaggagaggagtgggcgACGCCGGTGagatggGTGACATCTCCATTGACGAGGAGACTGAGGCCTACAGCCCATGGAGCTCCAACGCCATCCCCGGCCTCGCCAGCAAGCAGCGTCCAGGATTGGAGGCTCAGGGCTGGGCAGGCGAGGTCAGGGAGGGGGGCTCTGCCGCTGCTGTGTTCAGTCGTTTGGCCCGCTCGCCCATCTCAGAGGAAGTGCTAGAGGCGCTGCGCAGTGCGGACAGGAAGGGGCGGGATGTCGTGGTGGGCCTCTCCAACGCCTGCTGCAAGTGGGGCTGCAGCAAGAGCGagatcagctccctctgttgagCACTACCAACACCTCTCCTTTTCATCCCTCTGTTGAGCACTACCAACACCTCTCATTTTCATCCCTCTGTTGAGCACTACCAACACCTCTCCTTTTCATCCCTCTGTTGAGCACTACCAACACCTCTCATTTTCATCCCTCTGTTGAGCACTACCAACACCTCTCCTTTTCATCCCTCTGTTGAGCACTACCAACACCTCTCCTTTTCATCCCTCTGTTgagcatccctccctccttccctctagcCCTCCATCCCTCTAGCCCTCCTTCCCTCTAgccccccccatccctccttccctccatccctccatccctccacttttctatccttccattcctcctgcttcttctccttctcctggaTCATTGTGTTGATCATTTAGGGTCATGTATTCTCCAACCTATGTCAGTATTATGAGCAGTTTTTGTGTGTTTAGTTACTGATATGACAGTCCAATAAAGTTGTGTTTTGAAAGTG

Function

NR:

description
relaxin-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594035.2 False 1131 mRNA 0.56 2 4019218 4020524
XM_021594034.2 True 1142 mRNA 0.56 2 4019218 4020526

Neighbor

gene id symbol gene type direction distance location
LOC110512903 LOC106564302 coding downstream 609 3992371 ~ 4018609 (-)
LOC110493403 LOC106580921 coding downstream 98587 3906891 ~ 3920631 (-)
LOC118938513 LOC106595758 coding downstream 128164 3848692 ~ 3891054 (-)
LOC118938145 NA coding downstream 317157 3701546 ~ 3702061 (-)
LOC118938144 NA coding downstream 318892 3698309 ~ 3705039 (-)
LOC110487221 dcaf15 coding upstream 36507 4057033 ~ 4098713 (-)
LOC110485446 LOC106592110 coding upstream 78395 4098921 ~ 4114272 (-)
LOC110493393 LOC105012066 coding upstream 97238 4117764 ~ 4152718 (-)
LOC118938148 NA coding upstream 132709 4152927 ~ 4154217 (-)
LOC118938149 LOC106564249 coding upstream 142212 4162738 ~ 4165860 (-)
G1138032 NA non-coding downstream 40578 3977857 ~ 3978640 (-)
G1138031 NA non-coding downstream 43210 3975556 ~ 3976008 (-)
G1137994 NA non-coding downstream 53803 3964329 ~ 3965415 (-)
G1137992 NA non-coding downstream 62198 3956684 ~ 3957020 (-)
G1138019 NA non-coding upstream 32716 4053242 ~ 4053893 (-)
G1138005 NA non-coding upstream 34036 4054562 ~ 4055397 (-)
G1138041 NA non-coding upstream 38855 4059381 ~ 4060081 (-)
G1138059 NA non-coding upstream 39999 4060525 ~ 4064639 (-)
G1138060 NA non-coding upstream 48339 4068865 ~ 4069299 (-)
G1137672 LOC106595836 other downstream 253402 3765282 ~ 3765816 (-)
G1137666 NA other downstream 285918 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 487094 3521685 ~ 3532141 (-)
LOC110514041 LOC106585204 other downstream 831034 3161191 ~ 3197982 (-)
G1137174 NA other downstream 888665 3129613 ~ 3130553 (-)
G1138151 LOC106606801 other upstream 374219 4394745 ~ 4421260 (-)
G1138232 NA other upstream 598969 4619495 ~ 4620179 (-)
G1138568 NA other upstream 1137639 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 1180529 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 1197165 5216411 ~ 5244441 (-)

Expression


Co-expression Network