LOC110487221 (dcaf15)


Basic Information

Item Value
gene id LOC110487221
gene name dcaf15
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4057033 ~ 4098713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939886.1
GAGAACCAATGGGAAGACCATGGGTCGGAAGGTAGGCGGGGCCTAGTCAACACTACGGCGGAAAATGGCGCCCAGCTCGAAATCAGAAAAGGACGGTAACAAACAAACGCAGAGAAAACACAAAGAACATGTCGTTAAGCTTCTGAACCGTGGAAAGTTGTCTGGCCAGTATTCTCAGCGCTTGTTCAGGAAACTACCCCCGCGCGTCTGTGTTCCCCTGAAGAACATAGTCAGCGAGGAGTTCCTCAGAGCAGGACACATCTTCCTGGGGTTCACTAAGTGTGGTCGTTACGTGTTGTCCTACACCAGTGACTGTGGAGAGGACGATGACTTCTCCTTCTACACCTATCACCTCTACTGGTGGGAGTTCAACCTACACAGCAGACTCAAACAGGTGCACCATGTGCGTCTGTTTACAGGTGAGGACATCTACAGTGATCTCTACCTGACAGTGTGTGAGTGGCCCAACGACCACTCCAAGATCGTCATCTTTGGCTTCAATACTCGTAGCTCCAGCTCAGTGTTGATGAATCTGATGATGAGTGATGAGAACAACAGAGATATCTACATCACCATCGCCTCCATGCCTCCTCTCAGACCCTGCTCTCAGTGCTGCCCTCCAAATACCTCTACCATACGCACAGgtagtggagagtgtctggaacatggctatatgttgaacagtcGGTACCAGGTGGTCTATCCCTTCCCCACCTTCCAGCCTGCCTTCCAGCTGAAGAAAGACCAGGTGATCTTCCTCAACACCTCCTATTCCCTGGTGGCCtgctctgtgtccctctgtccagGTGAGCAGGGTCATTCCTCTCAGATCCTGTTCAGAAAGAGAGCCACAGCCCCCACCTTAGAACATCAAACCCCTCCATCgccctcttcatcctcttcctctcacgGGTCTCCCGACAGCCGCCTGCTAACTGCCAAACCAAGCCCCGCCCCTCTTTCCCCTAGCCAATCACACGCTGCCGCCCGGGCGCGAGAGTTCGCCGCCGACCTCTTCAGACGTgcccagggaggagggagagaaaacgagggaggggagaggagagggaatccGGAGGGGAGCGAAGTAGGAGAGGAGGCTGTCGTGactgagagagaaggggtgagcgtggagagggacagagaacagagggaagACACACAAACGGATCAACTGACTAGCGCACCACAGACTTCCACTTCAGCTGGGAACCAAAGTTTGTTGCGACCTTTGCCGGAGGACTCTATTCAGTGTAGTGCGATGACgtctcctgcctcctcctcctcgtcccccCCCACTCCTCATTCTTCTCAGGAAGCAGGCTGCAGCGAGCCGGGATATGTCAACTACACCCGCTTGCAGTACCGCATGCCACAGCCGGGGGCGCCAGAACAGGATGCAGGAGGTTATGAGGATGATAAGGTCCAGCTGCCCTTCACTGTGACTGACCTGAAGGGACGCAACCTACAGCTGGTCACTGGGCCCCACAacggacagagtgtgtgtgtggagcagttGACTCTGGACTTTGAGTACCTGATCAACGAGGTGATCCGGAGCGACGCCCGCTGGGCTGCTCAGTTCTGTTCCTTCAACGACTACGACGTTGTTATACTGGAGGTGTGTCCAGAGACTAACACAGTGGTGATAAACATTGGGCTGCTGCTTCTGGCGTTCTCCAACCCTGAAGAGGAACACTGCAGGCCCAACACCTACCACTCCAGTCTGCAGGTGAGCTGGGACCTCAACACAGGAGTGTGTCACACCGTCGGGGTCGGTGACCTCACTGAGGTCAAGGGTCAGACCAGTGGCAGTGTATGGAGTTCGTACAGGAAGTCTTGTGTGAACACAGTGATGAAGTGGCTGGTTCCGGAGAGCAGCTCTCGTTACATCAACCGCATGACCAACGAGGCCCTGCACAAAGGTTCCTCTCTACAGGTGTTGGCTGACAGCGACCGGAGTACCTGGATCATACTATGAGGGACAACAGAGGGGTGTCCTGACACCAGAGGCTcggactgtcacacacacacacccaccgacacacacccatccacacaccgacacacacccaTCCACATACCGacacacacccatccacacaccgacacacactcaTCCACACACCCATCCACACATACAGCAAGCCTGTTTAGCTGCTACAGTAACAGTCATAGGAtccctctcaaatggcaccctattccctcctattccaccctattccctccTATTCCCTCCTATTCCATCCTATTCCAtcctattccaccctattccccCCTATTCCCTCCTATTCCCTCCTATTCCAtcc
>XM_036939885.1
ATCGAGAACCAATGGGAAGACCATGGGTCGGAAGGTAGGCGGGGCCTAGTCAACACTACGGCGGAAAATGGCGCCCAGCTCGAAATCAGAAAAGGACGGTAACAAACAAACGCAGAGAAAACACAAAGAACATGTCGTTAAGCTTCTGAACCGTGGAAAGTTGTCTGGCCAGTATTCTCAGCGCTTGTTCAGGAAACTACCCCCGCGCGTCTGTGTTCCCCTGAAGAACATAGTCAGCGAGGAGTTCCTCAGAGCAGGACACATCTTCCTGGGGTTCACTAAGTGTGGTCGTTACGTGTTGTCCTACACCAGTGACTGTGGAGAGGACGATGACTTCTCCTTCTACACCTATCACCTCTACTGGTGGGAGTTCAACCTACACAGCAGACTCAAACAGGTGCACCATGTGCGTCTGTTTACAGGTGAGGACATCTACAGTGATCTCTACCTGACAGTGTGTGAGTGGCCCAACGACCACTCCAAGATCGTCATCTTTGGCTTCAATACTCGTAGCTCCAGCTCAGTGTTGATGAATCTGATGATGAGTGATGAGAACAACAGAGATATCTACATCACCATCGCCTCCATGCCTCCTCTCAGACCCTGCTCTCAGTGCTGCCCTCCAAATACCTCTACCATACGCACAGgtagtggagagtgtctggaacatggctatatgttgaacagtcGGTACCAGGTGGTCTATCCCTTCCCCACCTTCCAGCCTGCCTTCCAGCTGAAGAAAGACCAGGTGATCTTCCTCAACACCTCCTATTCCCTGGTGGCCtgctctgtgtccctctgtccagCAGGTGAGCAGGGTCATTCCTCTCAGATCCTGTTCAGAAAGAGAGCCACAGCCCCCACCTTAGAACATCAAACCCCTCCATCgccctcttcatcctcttcctctcacgGGTCTCCCGACAGCCGCCTGCTAACTGCCAAACCAAGCCCCGCCCCTCTTTCCCCTAGCCAATCACACGCTGCCGCCCGGGCGCGAGAGTTCGCCGCCGACCTCTTCAGACGTgcccagggaggagggagagaaaacgagggaggggagaggagagggaatccGGAGGGGAGCGAAGTAGGAGAGGAGGCTGTCGTGactgagagagaaggggtgagcgtggagagggacagagaacagagggaagACACACAAACGGATCAACTGACTAGCGCACCACAGACTTCCACTTCAGCTGGGAACCAAAGTTTGTTGCGACCTTTGCCGGAGGACTCTATTCAGTGTAGTGCGATGACgtctcctgcctcctcctcctcgtcccccCCCACTCCTCATTCTTCTCAGGAAGCAGGCTGCAGCGAGCCGGGATATGTCAACTACACCCGCTTGCAGTACCGCATGCCACAGCCGGGGGCGCCAGAACAGGATGCAGGAGGTTATGAGGATGATAAGGTCCAGCTGCCCTTCACTGTGACTGACCTGAAGGGACGCAACCTACAGCTGGTCACTGGGCCCCACAacggacagagtgtgtgtgtggagcagttGACTCTGGACTTTGAGTACCTGATCAACGAGGTGATCCGGAGCGACGCCCGCTGGGCTGCTCAGTTCTGTTCCTTCAACGACTACGACGTTGTTATACTGGAGGTGTGTCCAGAGACTAACACAGTGGTGATAAACATTGGGCTGCTGCTTCTGGCGTTCTCCAACCCTGAAGAGGAACACTGCAGGCCCAACACCTACCACTCCAGTCTGCAGGTGAGCTGGGACCTCAACACAGGAGTGTGTCACACCGTCGGGGTCGGTGACCTCACTGAGGTCAAGGGTCAGACCAGTGGCAGTGTATGGAGTTCGTACAGGAAGTCTTGTGTGAACACAGTGATGAAGTGGCTGGTTCCGGAGAGCAGCTCTCGTTACATCAACCGCATGACCAACGAGGCCCTGCACAAAGGTTCCTCTCTACAGGTGTTGGCTGACAGCGACCGGAGTACCTGGATCATACTATGAGGGACAACAGAGGGGTGTCCTGACACCAGAGGCTcggactgtcacacacacacacccaccgacacacacccatccacacaccgacacacacccaTCCACATACCGacacacacccatccacacaccgacacacactcaTCCACACACCCATCCACACATACAGCAAGCCTGTTTAGCTGCTACAGTAACAGTCATAGGAtccctctcaaatggcaccctattccctcctattccaccctattccctccTATTCCCTCCTATTCCATCCTATTCCAtcctattccaccctattccccCCTATTCCCTCCTATTCCCTCCTATTCCAtcc
>XM_036939887.1
CATGATCGAGAACCAATGGGAAGACCATGGGTCGGAAGGTAGGCGGGGCCTAGTCAACACTACGGCGGAAAATGGCGCCCAGCTCGAAATCAGAAAAGGACGGTAACAAACAAACGCAGAGAAAACACAAAGAACATGTCGTTAAGCTTCTGAACCGTGGAAAGTTGTCTGGCCAGTATTCTCAGCGCTTGTTCAGGAAACTACCCCCGCGCGTCTGTGTTCCCCTGAAGAACATAGTCAGCGAGGAGTTCCTCAGAGCAGGACACATCTTCCTGGGGTTCACTAAGTGTGGTCGTTACGTGTTGTCCTACACCAGTGACTGTGGAGAGGACGATGACTTCTCCTTCTACACCTATCACCTCTACTGGTGGGAGTTCAACCTACACAGCAGACTCAAACAGGTGCACCATGTGCGTCTGTTTACAGGTGAGGACATCTACAGTGATCTCTACCTGACAGTGTGTGAGTGGCCCAACGACCACTCCAAGATCGTCATCTTTGGCTTCAATACTCGTAGCTCCAGCTCAGTGTTGATGAATCTGATGATGAGTGATGAGAACAACAGAGATATCTACATCACCATCGCCTCCATGCCTCCTCTCAGACCCTGCTCTCAGTGCTGCCCTCCAAATACCTCTACCATACGCACAGgtagtggagagtgtctggaacatggctatatgttgaacagtcGGTACCAGGTGGTCTATCCCTTCCCCACCTTCCAGCCTGCCTTCCAGCTGAAGAAAGACCAGGTGATCTTCCTCAACACCTCCTATTCCCTGGTGGCCtgctctgtgtccctctgtccagCAGGTGAGCAGGGTCATTCCTCTCAGATCCTGTTCAGAAAGAGAGCCACAGCCCCCACCTTAGAACATCAAACCCCTCCATCgccctcttcatcctcttcctctcacgGGTCTCCCGACAGCCGCCTGCTAACTGCCAAACCAAGCCCCGCCCCTCTTTCCCCTAGCCAATCACACGCTGCCGCCCGGGCGCGAGAGTTCGCCGCCGACCTCTTCAGACGTgcccagggaggagggagagaaaacgagggaggggagaggagagggaatccGGAGGGGAGCGAAGTAGGAGAGGAGGCTGTCGTGactgagagagaaggggtgagcgtggagagggacagagaacagagggaagACACACAAACGGATCAACTGACTAGCGCACCACAGACTTCCACTTCAGCTGGGAACCAAAGTTTGTTGCGACCTTTGCCGGAGGACTCTATTCAGTGTAGTGCGATGACgtctcctgcctcctcctcctcgtcccccCCCACTCCTCATTCTTCTCAGGAAGCAGGCTGCAGCGAGCCGGGATATGTCAACTACACCCGCTTGCAGTACCGCATGCCACAGCCGGGGGCGCCAGAACAGGATGCAGGAGGTTATGAGGATGATAAGGTCCAGCTGCCCTTCACTGTGACTGACCTGAAGGGACGCAACCTACAGCTGGTCACTGGGCCCCACAacggacagGTGTGTCCAGAGACTAACACAGTGGTGATAAACATTGGGCTGCTGCTTCTGGCGTTCTCCAACCCTGAAGAGGAACACTGCAGGCCCAACACCTACCACTCCAGTCTGCAGGTGAGCTGGGACCTCAACACAGGAGTGTGTCACACCGTCGGGGTCGGTGACCTCACTGAGGTCAAGGGTCAGACCAGTGGCAGTGTATGGAGTTCGTACAGGAAGTCTTGTGTGAACACAGTGATGAAGTGGCTGGTTCCGGAGAGCAGCTCTCGTTACATCAACCGCATGACCAACGAGGCCCTGCACAAAGGTTCCTCTCTACAGGTGTTGGCTGACAGCGACCGGAGTACCTGGATCATACTATGAGGGACAACAGAGGGGTGTCCTGACACCAGAGGCTcggactgtcacacacacacacccaccgacacacacccatccacacaccgacacacacccaTCCACATACCGacacacacccatccacacaccgacacacactcaTCCACACACCCATCCACACATACAGCAAGCCTGTTTAGCTGCTACAGTAACAGTCATAGGAtccctctcaaatggcaccctattccctcctattccaccctattccctccTATTCCCTCCTATTCCATCCTATTCCAtcctattccaccctattccccCCTATTCCCTCCTATTCCCTCCTATTCCAtcc

Function

symbol description
dcaf15 Predicted to be involved in protein ubiquitination. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DCAF15 (DDB1 and CUL4 associated factor 15).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 15

GO: NA

KEGG:

id description
K11791 DCAF15; DDB1- and CUL4-associated factor 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939886.1 False 2309 mRNA 0.55 13 4057033 4098706
XM_036939885.1 False 2315 mRNA 0.55 13 4057033 4098709
XM_036939887.1 True 2196 mRNA 0.55 12 4057033 4098713

Neighbor

gene id symbol gene type direction distance location
LOC110514885 LOC106593640 coding downstream 36507 4019218 ~ 4020526 (-)
LOC110512903 LOC106564302 coding downstream 38424 3992371 ~ 4018609 (-)
LOC110493403 LOC106580921 coding downstream 136402 3906891 ~ 3920631 (-)
LOC118938513 LOC106595758 coding downstream 165979 3848692 ~ 3891054 (-)
LOC118938145 NA coding downstream 354972 3701546 ~ 3702061 (-)
LOC110485446 LOC106592110 coding upstream 208 4098921 ~ 4114272 (-)
LOC110493393 LOC105012066 coding upstream 19051 4117764 ~ 4152718 (-)
LOC118938148 NA coding upstream 54522 4152927 ~ 4154217 (-)
LOC118938149 LOC106564249 coding upstream 64025 4162738 ~ 4165860 (-)
LOC118938150 LOC106595636 coding upstream 72115 4170828 ~ 4185204 (-)
G1138005 NA non-coding downstream 1636 4054562 ~ 4055397 (-)
G1138019 NA non-coding downstream 3140 4053242 ~ 4053893 (-)
G1138021 NA non-coding downstream 36339 4013776 ~ 4020694 (-)
G1138032 NA non-coding downstream 78393 3977857 ~ 3978640 (-)
G1138031 NA non-coding downstream 81025 3975556 ~ 3976008 (-)
G1138070 NA non-coding upstream 30497 4129210 ~ 4129587 (-)
G1138001 NA non-coding upstream 89579 4188292 ~ 4189370 (-)
G1138085 NA non-coding upstream 122073 4220786 ~ 4221203 (-)
G1138088 LOC106592176 non-coding upstream 127973 4226686 ~ 4227530 (-)
G1137672 LOC106595836 other downstream 291217 3765282 ~ 3765816 (-)
G1137666 NA other downstream 323733 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 524909 3521685 ~ 3532141 (-)
LOC110514041 LOC106585204 other downstream 868849 3161191 ~ 3197982 (-)
G1137174 NA other downstream 926480 3129613 ~ 3130553 (-)
G1138151 LOC106606801 other upstream 296032 4394745 ~ 4421260 (-)
G1138232 NA other upstream 520782 4619495 ~ 4620179 (-)
G1138568 NA other upstream 1059452 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 1102342 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 1118978 5216411 ~ 5244441 (-)

Expression


Co-expression Network