LOC118938150 (LOC106595636)


Basic Information

Item Value
gene id LOC118938150
gene name LOC106595636
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4170828 ~ 4185204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939892.1
CAGAGGTTTTCtgagctccctctctcttttccccccccAGGCAGTTAATATTCATTTTCCAGCGCTTTTATCCTCTACCAACCCACGACGATTCGAAACGACAAccgggaggagtgtgtgtgttgtgccatCCGATCCATCTCGTTCGCGGGTCATGACGCTCGAGGCGATCCGTTACCGGGCCGGGTCTCTGCAGATTCTTAACCAGCTACTCCTACCGCAGGAGACTGTGTTCGACGAGGTCCGCACAGTGCAGGACGGCTATGAAGCGATCAAGTCCATGAAGgtaCGAGGGGCTCCTGCCATCGCCATCGTAGGCTGTCTGAGCCTGGCAGTGGAGCTGCGCGCAGGTGCCGGGGGCAACGACCCCGTGACCTTCATCCGGGAGTCTCTGTGTCACCTGACTTCTGCAAGACCCACGGCCGTCAATATGGGCCGGGCCGCCCGAGAACTGATGGAGTTTGCCGAGAACGAGAGCATGGAGAAAAACCCAGAACAACTCacagagagTGTGATTGGCTGGATCGAGGAGATGCTGGAGCGGGATGTCAATGACAACAAGAAGATCGGTAACTACGGAGCTCAGCACATCCTGTCTGGTGTTCCCCGAGACTCTGTCACTATCTTAACTCACTGCAACACCGGGTCACTGGCCACGGCAGGATACGGCACCGCACTGGgtgtGGTGCGTTCCCTCCATGCTCTCGGCAGACTGAAGCGGATGTATTGTACAGAGACCAGACCCTATAACCAAGGGGCCAGACTGACAGCCTATGAGGCCGTGGCTGAAGGTTTCCCTGCTACTCTCATCACAGACAGCATGGCTGCACTCACCATGAGAGAGAAGAGCATCACAGCTGTTGTCGTAGGGGCGGACAGGGTGGTTGCTAACGGTGACACGGCCAACAAAATCGGCACGTACCAGCTGGCCATCGCCGCAAAGCACCATGGGATCCCGTTCTACGTGGCGGCGCCCAGCACGTCATGTGACCTGAGTCTGGAGAGCGGCCGACACATTGTCATCGAGGAGCGTCCCGCCGAGGAACTCACCAGCATCAACGGAGTACCAATCGCTGCCccaggtaTTGATGTATGGAACCCGGCGTTTGACGTGACCCCCCACCAGCTGATAACGGGGGGCATCATCACAGAGCTGGGGGTGTTTCTGCCCTCGGAGCTGCAGGCAGCACTCACCGGCCGTCTCACTGCCCTGTAGACGGCGCTATCACCACCCGCTGGCCGCCGTGCGCTACTGCACCTTAATATTcctgctctcactctctcatacGACTTCCAcgtcctcacacacacagctgatgtGGAAGTCTAGTTTtgttacatttacacacacacagtcagtgttCTACAAACTCACACGTTTtacggtctcacacacacacacacatcaacgcaggaactcagacacacacatccaACCCCCTCCCactcctgtccctccctctctctcctctctggtctctcctgtgttcatctcctgtctctcctctct

Function

NR:

description
PREDICTED: methylthioribose-1-phosphate isomerase

GO:

id name namespace
GO:0019509 L-methionine salvage from methylthioadenosine biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046523 S-methyl-5-thioribose-1-phosphate isomerase activity molecular_function

KEGG:

id description
K08963 mtnA; methylthioribose-1-phosphate isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939892.1 True 1510 mRNA 0.57 6 4170828 4185204

Neighbor

gene id symbol gene type direction distance location
LOC118938149 LOC106564249 coding downstream 4968 4162738 ~ 4165860 (-)
LOC118938148 NA coding downstream 16611 4152927 ~ 4154217 (-)
LOC110493393 LOC105012066 coding downstream 18110 4117764 ~ 4152718 (-)
LOC110485446 LOC106592110 coding downstream 56556 4098921 ~ 4114272 (-)
LOC110487221 dcaf15 coding downstream 72115 4057033 ~ 4098713 (-)
LOC110495043 LOC106564250 coding upstream 5033 4190237 ~ 4224638 (-)
LOC118938514 LOC106564252 coding upstream 51587 4236791 ~ 4237823 (-)
LOC118938533 LOC106564252 coding upstream 59113 4244317 ~ 4245773 (-)
LOC110495042 LOC106592322 coding upstream 68821 4254025 ~ 4254852 (-)
LOC110495140 LOC106592331 coding upstream 76198 4261402 ~ 4262576 (-)
G1138070 NA non-coding downstream 41241 4129210 ~ 4129587 (-)
G1138065 NA non-coding downstream 86232 4084295 ~ 4084596 (-)
G1138064 NA non-coding downstream 87883 4082580 ~ 4082945 (-)
G1138062 NA non-coding downstream 89794 4080814 ~ 4081034 (-)
G1138001 NA non-coding upstream 3088 4188292 ~ 4189370 (-)
G1138085 NA non-coding upstream 35582 4220786 ~ 4221203 (-)
G1138088 LOC106592176 non-coding upstream 41482 4226686 ~ 4227530 (-)
G1138101 NA non-coding upstream 68463 4253667 ~ 4253884 (-)
G1138104 NA non-coding upstream 79116 4264320 ~ 4264547 (-)
G1137672 LOC106595836 other downstream 405012 3765282 ~ 3765816 (-)
G1137666 NA other downstream 437528 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 638704 3521685 ~ 3532141 (-)
LOC110514041 LOC106585204 other downstream 982644 3161191 ~ 3197982 (-)
G1137174 NA other downstream 1040275 3129613 ~ 3130553 (-)
G1138151 LOC106606801 other upstream 209541 4394745 ~ 4421260 (-)
G1138232 NA other upstream 434291 4619495 ~ 4620179 (-)
G1138568 NA other upstream 972961 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 1015851 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 1032487 5216411 ~ 5244441 (-)

Expression


Co-expression Network