LOC118938514 (LOC106564252)


Basic Information

Item Value
gene id LOC118938514
gene name LOC106564252
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4236791 ~ 4237823 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942557.1
GAACGCTATGATTTGTCAACTCCAAGACCTACCGCCTTACATGGAGTCCGAAAACAAGAGTTTCGAACCGTGGCGTGACTACATGAAGTTAGCTGACCTAGTGCGTGAGATGCAGTTAGGCAAGTTCACCCCAGAACCGTCAACCGTTGAGGGTCATGACTCCGGGATATGGTCGACCATGGTGGAATTTGAGGAGTTTCCGCCGCGAGCCTTGCTGTCACCGATAACACCCGTGGCGACACCACCCCTATGGCACGAAATGGAACCCCTGGATTCCGAAATCGTCCTCTTGCATGAAGACGCTCCTTTATCGCCGAGCAGCACCAAGGGTTCCGAGCCCCCTACAGCACCGTCCAGATCCCCCGCTGGCACCTGGGACCAGAGTGGGAGAAACACGCCGGAGGAGGTGCCATCACCCGAGCGCACCTGGGACCAGAGTGGGAGAAACACGCCGGAGGAGGTGCCATCACCCGAGCGCACCTGGGACCGGAGTGGGAGAAACACGCCGGAGGAGGTGCCATCACCCGAGCGCACCTGGTACCAGAGTGGGAGAAACACGCCGGAGGAGGTGCCATCACCCGAGCGCACCTGGTACCAGAGTGGGAGAAACACGCCGGAGGAGGTGCAATCACCCGAGCGCACCTGGGGCCAGAGTGGGAGAAACACGCCGGAGGAGGTGCCATCACCCGAGCGCACCTGGTACCAGAGTGGGAGAAACACGCCGGAGGAGGTGCCATCACCCGAGCGCACCTGCTACCAGAGTGGGAGAAACACGCCGGAGGAGGTGCCATCACCCGAGCGCACCTGGTACCAGGGTGGGAGAAACACACCGGAGGAGGTGCCATCACCCGAGCGCAAGTTCTGCAGCTTCTGCAAATACAACGGGCAGCCCGAGTCGGTGTTTCTGTCCCACAGCATCAAGAACCAAGATGGGGACATGATGTGCCGGTACCTGCAGCTAAGTCTTTGCCCTCTCTGCGGGGTCACCGGGGCCCAAGCCGCCACCATGCACCATTGTTCACcattggtgtaa

Function

NR:

description
PREDICTED: nanos homolog 3-like, partial

GO:

id name namespace
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942557.1 True 1033 mRNA 0.60 1 4236791 4237823

Neighbor

gene id symbol gene type direction distance location
LOC110495043 LOC106564250 coding downstream 12153 4190237 ~ 4224638 (-)
LOC118938150 LOC106595636 coding downstream 51587 4170828 ~ 4185204 (-)
LOC118938149 LOC106564249 coding downstream 70931 4162738 ~ 4165860 (-)
LOC118938148 NA coding downstream 82574 4152927 ~ 4154217 (-)
LOC110493393 LOC105012066 coding downstream 84073 4117764 ~ 4152718 (-)
LOC118938533 LOC106564252 coding upstream 6494 4244317 ~ 4245773 (-)
LOC110495042 LOC106592322 coding upstream 16202 4254025 ~ 4254852 (-)
LOC110495140 LOC106592331 coding upstream 23579 4261402 ~ 4262576 (-)
rtnanos3 rtnanos3 coding upstream 31876 4269699 ~ 4271427 (-)
LOC110493382 LOC106564272 coding upstream 34058 4271881 ~ 4283197 (-)
G1138088 LOC106592176 non-coding downstream 9261 4226686 ~ 4227530 (-)
G1138085 NA non-coding downstream 15588 4220786 ~ 4221203 (-)
G1138001 NA non-coding downstream 47421 4188292 ~ 4189370 (-)
G1138070 NA non-coding downstream 107204 4129210 ~ 4129587 (-)
G1138101 NA non-coding upstream 15844 4253667 ~ 4253884 (-)
G1138104 NA non-coding upstream 26497 4264320 ~ 4264547 (-)
G1138105 NA non-coding upstream 27229 4265052 ~ 4265335 (-)
G1138106 NA non-coding upstream 28651 4266474 ~ 4266676 (-)
G1137672 LOC106595836 other downstream 470975 3765282 ~ 3765816 (-)
G1137666 NA other downstream 503491 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 704667 3521685 ~ 3532141 (-)
LOC110514041 LOC106585204 other downstream 1048607 3161191 ~ 3197982 (-)
G1137174 NA other downstream 1106238 3129613 ~ 3130553 (-)
G1138151 LOC106606801 other upstream 156922 4394745 ~ 4421260 (-)
G1138232 NA other upstream 381672 4619495 ~ 4620179 (-)
G1138568 NA other upstream 920342 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 963232 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 979868 5216411 ~ 5244441 (-)

Expression


Co-expression Network